Wall clock time and date at job start Tue Mar 31 2020 07:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47413 * 2 1 4 4 C 1.50706 * 109.47305 * 239.99679 * 2 1 3 5 5 O 1.21276 * 120.00149 * 240.00111 * 4 2 1 6 6 N 1.34771 * 119.99616 * 60.00233 * 4 2 1 7 7 C 1.46501 * 120.00020 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47405 * 179.97438 * 7 6 4 9 9 C 1.53781 * 113.61492 * 174.99701 * 8 7 6 10 10 C 1.53781 * 87.08070 * 140.06794 * 9 8 7 11 11 N 1.46506 * 113.61361 * 89.11956 * 10 9 8 12 12 C 1.36932 * 119.99948 * 156.53166 * 11 10 9 13 13 H 1.08003 * 120.00194 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99870 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99865 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00043 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47266 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.46703 * 209.99822 * 16 14 12 19 19 H 1.48500 * 109.46754 * 329.99754 * 16 14 12 20 20 C 1.53773 * 87.17302 * 334.52628 * 10 9 8 21 21 C 1.53001 * 109.47207 * 119.99864 * 2 1 3 22 22 F 1.39900 * 109.47498 * 180.02562 * 21 2 1 23 23 F 1.39904 * 109.47214 * 300.00455 * 21 2 1 24 24 F 1.39906 * 109.47215 * 60.00121 * 21 2 1 25 25 H 1.08994 * 109.47292 * 299.99874 * 1 2 3 26 26 H 1.09003 * 109.46948 * 60.00585 * 1 2 3 27 27 H 1.09002 * 109.47188 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00572 * 359.97438 * 6 4 2 29 29 H 1.09002 * 109.46995 * 59.99707 * 7 6 4 30 30 H 1.08998 * 109.46746 * 299.99904 * 7 6 4 31 31 H 1.08998 * 112.84975 * 43.80400 * 8 7 6 32 32 H 1.09001 * 113.61537 * 25.52248 * 9 8 7 33 33 H 1.08998 * 113.61680 * 254.61401 * 9 8 7 34 34 H 1.09002 * 113.61408 * 219.93560 * 10 9 8 35 35 H 0.96997 * 119.99707 * 336.52824 * 11 10 9 36 36 H 0.97001 * 119.99982 * 180.02562 * 15 14 12 37 37 H 1.09007 * 113.61678 * 140.01927 * 20 10 9 38 38 H 1.09000 * 113.61916 * 270.92600 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6844 -0.2201 -4.8999 9 6 2.2406 -0.7949 -6.2133 10 6 0.8359 -0.5918 -6.8054 11 7 0.6384 0.7289 -7.4079 12 6 -0.3233 0.9073 -8.3662 13 1 -0.9360 0.0743 -8.6782 14 6 -0.5109 2.1588 -8.9368 15 7 -1.4349 2.3302 -9.8583 16 14 0.5492 3.5994 -8.3978 17 1 1.7631 3.6670 -9.2504 18 1 -0.2228 4.8605 -8.5347 19 1 0.9499 3.4157 -6.9797 20 6 0.2978 -0.7003 -5.3690 21 6 2.0400 -0.7212 1.2493 22 9 3.4390 -0.7207 1.2496 23 9 1.5736 -0.0618 2.3916 24 9 1.5737 -2.0403 1.2493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.1489 0.5384 -2.5436 29 1 1.8310 -1.9685 -3.6505 30 1 3.2847 -0.9414 -3.6508 31 1 1.7693 0.8642 -4.8273 32 1 2.5368 -1.8414 -6.1411 33 1 3.0038 -0.1688 -6.6754 34 1 0.5140 -1.4058 -7.4549 35 1 1.1888 1.4769 -7.1280 36 1 -1.5657 3.2046 -10.2572 37 1 -0.5063 0.0022 -5.1496 38 1 0.0639 -1.7209 -5.0662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100580231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:37 Heat of formation + Delta-G solvation = -187.375101 kcal Electronic energy + Delta-G solvation = -23844.690451 eV Core-core repulsion = 19692.982072 eV Total energy + Delta-G solvation = -4151.708379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.13197 -48.63257 -48.58964 -41.13683 -39.98467 -36.15168 -35.33340 -34.71724 -32.60951 -28.96259 -27.43472 -26.44672 -25.58713 -24.38147 -23.02812 -21.58541 -20.24328 -19.73415 -19.52397 -19.48044 -18.70553 -17.74534 -17.00876 -16.66311 -16.42585 -16.10236 -15.71965 -15.48015 -15.26940 -15.08867 -15.00771 -14.78569 -14.72108 -14.63681 -14.57846 -14.34821 -13.92482 -13.49180 -13.34463 -13.12046 -13.01542 -12.94537 -12.67030 -12.43463 -12.16616 -11.86925 -11.64228 -11.56495 -11.12215 -10.94961 -10.79931 -10.15561 -9.28320 -8.01498 -5.35372 1.38092 1.38187 1.43493 1.50468 1.51309 2.01586 2.49595 2.64716 2.99189 3.08947 3.29107 3.52756 3.60685 3.74257 3.81137 3.85611 3.98655 4.01887 4.28785 4.38470 4.61751 4.66015 4.71465 4.77241 4.95191 4.99403 5.08755 5.11264 5.22873 5.33278 5.45844 5.56154 5.82194 6.23819 6.35648 7.03128 7.09358 7.86038 8.04822 9.20107 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.002982 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.292463 B = 9386.071003 C = 9726.523832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 H 0.173 0.827 4 C 0.517 3.483 5 O -0.569 6.569 6 N -0.704 5.704 7 C 0.138 3.862 8 C -0.103 4.103 9 C -0.134 4.134 10 C 0.143 3.857 11 N -0.734 5.734 12 C -0.233 4.233 13 H 0.055 0.945 14 C -0.066 4.066 15 N -0.986 5.986 16 Si 0.957 3.043 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.245 1.245 20 C -0.154 4.154 21 C 0.466 3.534 22 F -0.188 7.188 23 F -0.176 7.176 24 F -0.186 7.186 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.417 0.583 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.367 0.633 36 H 0.258 0.742 37 H 0.056 0.944 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -3.031 24.012 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 H 0.191 0.809 4 C 0.302 3.698 5 O -0.448 6.448 6 N -0.356 5.356 7 C 0.015 3.985 8 C -0.122 4.122 9 C -0.173 4.173 10 C 0.034 3.966 11 N -0.375 5.375 12 C -0.364 4.364 13 H 0.073 0.927 14 C -0.257 4.257 15 N -0.636 5.636 16 Si 0.784 3.216 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.169 1.169 20 C -0.194 4.194 21 C 0.411 3.589 22 F -0.169 7.169 23 F -0.158 7.158 24 F -0.168 7.168 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.255 0.745 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.578 -3.808 23.937 25.395 hybrid contribution 0.106 1.091 -0.095 1.100 sum 7.684 -2.718 23.841 25.196 Atomic orbital electron populations 1.21937 0.87362 1.04671 1.06795 1.22714 1.02690 1.03765 0.88428 0.80930 1.20186 0.80045 0.84233 0.85297 1.90803 1.39304 1.27611 1.87126 1.45802 1.52917 1.32302 1.04576 1.21369 0.99031 0.95985 0.82162 1.22621 0.96756 1.00100 0.92730 1.23353 0.96687 1.02434 0.94859 1.21355 0.95904 0.86660 0.92724 1.42420 1.41646 1.07488 1.45993 1.19057 1.09903 0.95347 1.12060 0.92698 1.25541 1.00478 1.00593 0.99099 1.69892 1.37776 1.23805 1.32137 0.85389 0.78108 0.78655 0.79473 1.20754 1.22456 1.16871 1.23747 0.96241 1.01263 0.98167 1.20170 0.75346 0.77616 0.85723 1.93189 1.30581 1.96388 1.96792 1.93194 1.88383 1.80551 1.53636 1.93179 1.88352 1.38472 1.96787 0.88265 0.87624 0.91684 0.74523 0.91376 0.91348 0.88801 0.87650 0.91366 0.92774 0.79886 0.93357 0.92549 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.85 71.98 0.64 -0.66 16 2 C -0.15 -1.96 2.71 -11.54 -0.03 -1.99 16 3 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.52 10.06 6.92 87.66 0.61 10.66 16 5 O -0.57 -16.35 14.83 -3.02 -0.04 -16.40 16 6 N -0.70 -11.29 5.45 -463.07 -2.52 -13.81 16 7 C 0.14 2.64 5.52 86.38 0.48 3.12 16 8 C -0.10 -2.23 3.64 -10.18 -0.04 -2.27 16 9 C -0.13 -3.31 7.38 31.12 0.23 -3.09 16 10 C 0.14 4.83 4.55 45.51 0.21 5.03 16 11 N -0.73 -31.63 5.11 -320.45 -1.64 -33.27 16 12 C -0.23 -12.75 10.45 84.04 0.88 -11.87 16 13 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 14 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 15 N -0.99 -61.94 13.97 21.65 0.30 -61.64 16 16 Si 0.96 43.19 27.74 68.60 1.90 45.09 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.24 -9.54 6.52 99.48 0.65 -8.89 16 20 C -0.15 -4.09 7.45 31.21 0.23 -3.85 16 21 C 0.47 8.71 2.42 71.98 0.17 8.89 16 22 F -0.19 -4.33 16.40 44.97 0.74 -3.60 16 23 F -0.18 -2.89 16.80 44.97 0.76 -2.13 16 24 F -0.19 -4.34 15.88 44.97 0.71 -3.63 16 25 H 0.10 0.58 7.80 -2.39 -0.02 0.56 16 26 H 0.11 0.54 7.56 -2.39 -0.02 0.52 16 27 H 0.06 0.75 7.80 -2.39 -0.02 0.73 16 28 H 0.42 4.55 7.89 -92.71 -0.73 3.82 16 29 H 0.07 1.41 7.85 -2.39 -0.02 1.39 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.11 2.17 8.10 -2.39 -0.02 2.15 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.37 14.91 5.76 -92.71 -0.53 14.38 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.09 2.11 7.91 -2.39 -0.02 2.09 16 Total: -1.00 -72.95 328.17 3.82 -69.13 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.23 Total: 19.57 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 3.84 Total: 0.68 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.86 Total: -108.71 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.04 Total: -16.40 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 2.21 Total: -9.36 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.90 Total: 45.09 kcal Total: -72.95 3.82 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100580231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.249 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds