Wall clock time and date at job start Tue Mar 31 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 C 1.53002 * 109.46891 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99773 * 84.38421 * 5 4 3 7 7 H 1.07999 * 120.00479 * 326.01861 * 6 5 4 8 8 C 1.38817 * 119.99605 * 146.01396 * 6 5 4 9 9 N 1.31614 * 120.00275 * 336.85754 * 8 6 5 10 10 Si 1.86803 * 119.99691 * 156.86103 * 8 6 5 11 11 H 1.48496 * 109.47604 * 90.00045 * 10 8 6 12 12 H 1.48506 * 109.46884 * 210.00083 * 10 8 6 13 13 H 1.48505 * 109.47166 * 329.99378 * 10 8 6 14 14 C 1.46501 * 119.99929 * 264.39094 * 5 4 3 15 15 C 1.50701 * 109.47466 * 90.00136 * 14 5 4 16 16 C 1.38319 * 119.80183 * 269.72683 * 15 14 5 17 17 C 1.38203 * 120.18516 * 179.72365 * 16 15 14 18 18 F 1.35104 * 120.09524 * 180.27417 * 17 16 15 19 19 C 1.39917 * 119.80723 * 0.52061 * 17 16 15 20 20 C 1.43199 * 120.18835 * 179.72826 * 19 17 16 21 21 N 8.09993 * 71.23095 * 329.77083 * 2 1 3 22 22 C 1.39916 * 119.62349 * 359.75286 * 19 17 16 23 23 F 1.35098 * 120.10018 * 179.97438 * 22 19 17 24 24 C 1.38200 * 119.80262 * 359.97438 * 22 19 17 25 25 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99477 * 1 2 3 27 27 H 1.08994 * 109.47753 * 59.99819 * 1 2 3 28 28 H 1.09002 * 109.47060 * 240.00523 * 2 1 3 29 29 H 1.08999 * 109.47580 * 119.99755 * 2 1 3 30 30 H 1.09002 * 109.46823 * 60.00378 * 3 2 1 31 31 H 1.08988 * 109.47277 * 300.00195 * 3 2 1 32 32 H 1.09002 * 109.47023 * 60.00568 * 4 3 2 33 33 H 1.08994 * 109.47826 * 300.00203 * 4 3 2 34 34 H 0.97001 * 120.00186 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46584 * 209.99536 * 14 5 4 36 36 H 1.08997 * 109.47124 * 329.99705 * 14 5 4 37 37 H 1.07999 * 119.90578 * 359.97438 * 16 15 14 38 38 H 1.08006 * 119.90738 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1765 3.5087 1.1799 7 1 3.4729 3.3318 1.9799 8 6 5.2010 4.4303 1.3477 9 7 6.2932 4.3402 0.6189 10 14 5.0293 5.7984 2.6080 11 1 5.5648 5.3382 3.9144 12 1 5.7909 6.9892 2.1527 13 1 3.5958 6.1556 2.7587 14 6 4.4199 3.4723 -1.2629 15 6 3.2108 4.1660 -1.8357 16 6 2.3714 3.4843 -2.6982 17 6 1.2573 4.1109 -3.2236 18 9 0.4357 3.4416 -4.0616 19 6 0.9857 5.4421 -2.8893 20 6 -0.1633 6.1012 -3.4337 21 7 -1.0763 6.6263 -3.8611 22 6 1.8432 6.1259 -2.0206 23 9 1.5903 7.4116 -1.6917 24 6 2.9497 5.4821 -1.4999 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8907 34 1 7.0092 4.9839 0.7364 35 1 5.2073 4.2043 -1.0829 36 1 4.7760 2.7213 -1.9680 37 1 2.5851 2.4581 -2.9586 38 1 3.6126 6.0082 -0.8288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140755240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:57 Heat of formation + Delta-G solvation = -32.116117 kcal Electronic energy + Delta-G solvation = -23659.011358 eV Core-core repulsion = 19944.804738 eV Total energy + Delta-G solvation = -3714.206620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98169 -48.90869 -38.99795 -36.77892 -36.03186 -34.25886 -31.95417 -31.15220 -30.18334 -28.24977 -26.48325 -24.26761 -22.75185 -22.47480 -20.91204 -20.34927 -19.13334 -17.57086 -17.22153 -16.70708 -15.99719 -15.61108 -15.23411 -15.03082 -15.01399 -14.72653 -14.02862 -13.88815 -13.70185 -13.56181 -13.46695 -13.08259 -12.95532 -12.62535 -12.36507 -12.09286 -11.73369 -11.57395 -11.51837 -11.30304 -11.16553 -10.87127 -10.69869 -10.63082 -10.49101 -10.26719 -10.16935 -9.90160 -8.77020 -8.58907 -8.56834 -6.93260 -6.09790 -3.58663 0.69117 1.21240 2.65589 2.98648 3.21184 3.31222 3.35071 3.72217 3.80092 3.88816 4.27247 4.50503 4.92353 5.01611 5.09699 5.17964 5.30997 5.47024 5.50515 5.55739 5.80806 5.85196 5.88342 6.06155 6.08895 6.14246 6.24583 6.25835 6.27881 6.35462 6.47125 6.55074 6.81932 6.83793 6.91600 7.02308 7.31371 7.49673 7.58324 8.19625 8.86641 9.49399 10.03790 10.89876 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.007101 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.091218 B = 3942.336885 C = 5662.278447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.146 3.854 5 N -0.569 5.569 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.012 3.988 9 N -0.875 5.875 10 Si 0.890 3.110 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.160 3.840 15 C 0.012 3.988 16 C -0.165 4.165 17 C 0.168 3.832 18 F -0.130 7.130 19 C -0.134 4.134 20 C 0.265 3.735 21 N -0.420 5.420 22 C 0.172 3.828 23 F -0.128 7.128 24 C -0.145 4.145 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.260 0.740 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.144 0.856 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -4.000 -4.582 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.183 4.183 4 C 0.020 3.980 5 N -0.285 5.285 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.189 4.189 9 N -0.516 5.516 10 Si 0.718 3.282 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.034 3.966 15 C 0.006 3.994 16 C -0.185 4.185 17 C 0.145 3.855 18 F -0.108 7.108 19 C -0.140 4.140 20 C -0.050 4.050 21 N -0.096 5.096 22 C 0.150 3.850 23 F -0.106 7.106 24 C -0.165 4.165 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.162 0.838 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.561 -3.110 -5.196 8.222 hybrid contribution -0.161 0.745 0.775 1.087 sum -5.721 -2.365 -4.421 7.608 Atomic orbital electron populations 1.21765 0.96690 1.00690 1.01617 1.21487 0.95117 0.98119 1.01298 1.22279 0.99155 0.94864 1.01984 1.20996 0.91356 0.86169 0.99471 1.43818 1.74834 1.08153 1.01705 1.19103 1.07724 1.18849 0.92615 0.91592 1.25099 0.94073 1.01329 0.98376 1.69955 1.04301 1.35610 1.41720 0.86495 0.78313 0.81967 0.81421 1.20916 1.21042 1.19915 1.20371 0.92027 0.97791 0.86409 1.21363 0.98646 0.91490 0.87886 1.21063 0.94391 1.01778 1.01265 1.17265 0.89544 0.87885 0.90775 1.91521 1.71038 1.79680 1.68575 1.15670 0.95940 0.93886 1.08550 1.25157 0.92672 0.93682 0.93455 1.81193 1.10807 1.07984 1.09575 1.17391 0.94037 0.78741 0.94861 1.91529 1.93766 1.34654 1.90659 1.21156 0.96998 0.96003 1.02362 0.93503 0.93034 0.93055 0.92616 0.92464 0.92310 0.92479 0.94227 0.93129 0.92946 0.86497 0.93287 0.83805 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.72 16 3 C -0.14 -2.21 5.51 -26.73 -0.15 -2.36 16 4 C 0.15 2.54 5.72 -4.04 -0.02 2.52 16 5 N -0.57 -11.60 2.44 -174.60 -0.43 -12.02 16 6 C -0.25 -5.89 9.48 -15.06 -0.14 -6.03 16 7 H 0.07 1.57 7.93 -52.49 -0.42 1.15 16 8 C 0.01 0.30 4.95 -17.43 -0.09 0.21 16 9 N -0.88 -21.57 11.33 55.49 0.63 -20.94 16 10 Si 0.89 19.15 29.61 -169.99 -5.03 14.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.16 2.98 5.45 -5.19 -0.03 2.96 16 15 C 0.01 0.20 5.44 -104.56 -0.57 -0.37 16 16 C -0.17 -2.35 7.83 -39.56 -0.31 -2.66 16 17 C 0.17 2.44 7.28 -38.97 -0.28 2.16 16 18 F -0.13 -1.89 16.81 2.25 0.04 -1.85 16 19 C -0.13 -2.08 5.75 -106.71 -0.61 -2.69 16 20 C 0.27 4.40 14.63 -22.45 -0.33 4.07 16 21 N -0.42 -7.46 18.54 41.87 0.78 -6.68 16 22 C 0.17 2.74 7.28 -38.97 -0.28 2.45 16 23 F -0.13 -2.10 16.81 2.25 0.04 -2.06 16 24 C -0.15 -2.41 9.65 -39.57 -0.38 -2.79 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.88 6.14 -51.94 -0.32 0.56 16 32 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.26 6.25 8.31 -40.82 -0.34 5.91 16 35 H 0.12 2.51 5.26 -51.93 -0.27 2.23 16 36 H 0.05 0.84 7.79 -51.93 -0.40 0.43 16 37 H 0.14 1.80 8.03 -52.49 -0.42 1.38 16 38 H 0.15 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -24.28 337.98 -6.63 -30.91 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.76 Total: -0.90 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.99 Total: -5.67 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.98 Total: -39.64 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -24.28 -6.63 -30.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140755240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.210 kcal (2) G-P(sol) polarization free energy of solvation -24.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds