Wall clock time and date at job start Tue Mar 31 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 C 1.53002 * 109.46891 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99773 * 84.38421 * 5 4 3 7 7 H 1.07999 * 120.00479 * 326.01861 * 6 5 4 8 8 C 1.38817 * 119.99605 * 146.01396 * 6 5 4 9 9 N 1.31614 * 120.00275 * 336.85754 * 8 6 5 10 10 Si 1.86803 * 119.99691 * 156.86103 * 8 6 5 11 11 H 1.48496 * 109.47604 * 90.00045 * 10 8 6 12 12 H 1.48506 * 109.46884 * 210.00083 * 10 8 6 13 13 H 1.48505 * 109.47166 * 329.99378 * 10 8 6 14 14 C 1.46501 * 119.99929 * 264.39094 * 5 4 3 15 15 C 1.50701 * 109.47466 * 90.00136 * 14 5 4 16 16 C 1.38319 * 119.80183 * 269.72683 * 15 14 5 17 17 C 1.38203 * 120.18516 * 179.72365 * 16 15 14 18 18 F 1.35104 * 120.09524 * 180.27417 * 17 16 15 19 19 C 1.39917 * 119.80723 * 0.52061 * 17 16 15 20 20 C 1.43199 * 120.18835 * 179.72826 * 19 17 16 21 21 N 8.09993 * 71.23095 * 329.77083 * 2 1 3 22 22 C 1.39916 * 119.62349 * 359.75286 * 19 17 16 23 23 F 1.35098 * 120.10018 * 179.97438 * 22 19 17 24 24 C 1.38200 * 119.80262 * 359.97438 * 22 19 17 25 25 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99477 * 1 2 3 27 27 H 1.08994 * 109.47753 * 59.99819 * 1 2 3 28 28 H 1.09002 * 109.47060 * 240.00523 * 2 1 3 29 29 H 1.08999 * 109.47580 * 119.99755 * 2 1 3 30 30 H 1.09002 * 109.46823 * 60.00378 * 3 2 1 31 31 H 1.08988 * 109.47277 * 300.00195 * 3 2 1 32 32 H 1.09002 * 109.47023 * 60.00568 * 4 3 2 33 33 H 1.08994 * 109.47826 * 300.00203 * 4 3 2 34 34 H 0.97001 * 120.00186 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46584 * 209.99536 * 14 5 4 36 36 H 1.08997 * 109.47124 * 329.99705 * 14 5 4 37 37 H 1.07999 * 119.90578 * 359.97438 * 16 15 14 38 38 H 1.08006 * 119.90738 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1765 3.5087 1.1799 7 1 3.4729 3.3318 1.9799 8 6 5.2010 4.4303 1.3477 9 7 6.2932 4.3402 0.6189 10 14 5.0293 5.7984 2.6080 11 1 5.5648 5.3382 3.9144 12 1 5.7909 6.9892 2.1527 13 1 3.5958 6.1556 2.7587 14 6 4.4199 3.4723 -1.2629 15 6 3.2108 4.1660 -1.8357 16 6 2.3714 3.4843 -2.6982 17 6 1.2573 4.1109 -3.2236 18 9 0.4357 3.4416 -4.0616 19 6 0.9857 5.4421 -2.8893 20 6 -0.1633 6.1012 -3.4337 21 7 -1.0763 6.6263 -3.8611 22 6 1.8432 6.1259 -2.0206 23 9 1.5903 7.4116 -1.6917 24 6 2.9497 5.4821 -1.4999 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9289 0.8907 34 1 7.0092 4.9839 0.7364 35 1 5.2073 4.2043 -1.0829 36 1 4.7760 2.7213 -1.9680 37 1 2.5851 2.4581 -2.9586 38 1 3.6126 6.0082 -0.8288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140755240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:57 Heat of formation + Delta-G solvation = -40.322890 kcal Electronic energy + Delta-G solvation = -23659.367230 eV Core-core repulsion = 19944.804738 eV Total energy + Delta-G solvation = -3714.562492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.23362 -50.18224 -40.33295 -38.18692 -37.40975 -35.52892 -33.51261 -32.54596 -31.47165 -29.52733 -28.01385 -25.71449 -24.02947 -23.75737 -22.24836 -21.63954 -20.43998 -19.02202 -18.51550 -18.19890 -17.27406 -16.96165 -16.63983 -16.49178 -16.22109 -16.01075 -15.42004 -15.35267 -15.16098 -14.82640 -14.77735 -14.42979 -14.21590 -13.92295 -13.67110 -13.31848 -13.14668 -12.98840 -12.88435 -12.71845 -12.63547 -12.38678 -12.10065 -11.99768 -11.81781 -11.72324 -11.56282 -11.18247 -10.48004 -9.93652 -9.82507 -8.58919 -7.83652 -5.37240 -0.59982 -0.05298 1.31135 1.46304 1.54845 1.60215 1.66661 2.40402 2.48589 2.55085 2.58421 3.21500 3.25395 3.69779 3.73965 3.80019 4.20852 4.26163 4.37157 4.50194 4.55012 4.57212 4.64908 4.71336 4.86721 5.00183 5.02932 5.10722 5.15008 5.16692 5.28015 5.44445 5.49987 5.60157 5.61082 5.73465 5.75319 5.82307 6.15610 6.48746 7.17884 7.86614 8.35395 9.12403 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.007101 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.091218 B = 3942.336885 C = 5662.278447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.584 5.584 6 C -0.255 4.255 7 H 0.053 0.947 8 C -0.020 4.020 9 N -0.902 5.902 10 Si 0.930 3.070 11 H -0.289 1.289 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.163 3.837 15 C 0.014 3.986 16 C -0.145 4.145 17 C 0.180 3.820 18 F -0.123 7.123 19 C -0.126 4.126 20 C 0.274 3.726 21 N -0.437 5.437 22 C 0.173 3.827 23 F -0.131 7.131 24 C -0.149 4.149 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.172 0.828 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 -5.195 -5.976 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.170 4.170 4 C 0.019 3.981 5 N -0.303 5.303 6 C -0.385 4.385 7 H 0.070 0.930 8 C -0.219 4.219 9 N -0.545 5.545 10 Si 0.759 3.241 11 H -0.216 1.216 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.037 3.963 15 C 0.010 3.990 16 C -0.165 4.165 17 C 0.158 3.842 18 F -0.101 7.101 19 C -0.132 4.132 20 C -0.040 4.040 21 N -0.114 5.114 22 C 0.151 3.849 23 F -0.110 7.110 24 C -0.169 4.169 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.858 -4.301 -6.614 10.453 hybrid contribution 0.141 1.101 1.094 1.559 sum -6.717 -3.200 -5.520 9.264 Atomic orbital electron populations 1.21746 0.95794 1.01747 1.01311 1.21454 0.95843 0.96202 1.02093 1.22110 0.97500 0.96535 1.00867 1.21084 0.92567 0.84810 0.99601 1.43931 1.75465 1.09401 1.01463 1.19099 1.06955 1.18807 0.93639 0.92951 1.25428 0.94152 1.02677 0.99600 1.70026 1.04826 1.36308 1.43375 0.85875 0.77720 0.80559 0.79954 1.21580 1.21423 1.20169 1.20209 0.92116 0.97689 0.86252 1.21107 0.97751 0.91434 0.88752 1.21175 0.93158 1.02585 0.99554 1.17157 0.89446 0.87264 0.90322 1.91551 1.70843 1.79448 1.68274 1.15701 0.95277 0.94224 1.07966 1.25231 0.92517 0.93261 0.93001 1.81211 1.11441 1.08507 1.10192 1.17283 0.94015 0.78632 0.95013 1.91523 1.93774 1.34909 1.90747 1.21074 0.97130 0.96392 1.02343 0.91800 0.93778 0.92945 0.91010 0.92515 0.94770 0.92164 0.92200 0.94848 0.93507 0.89206 0.91452 0.81094 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.40 16 2 C -0.12 -2.71 5.93 30.59 0.18 -2.53 16 3 C -0.13 -3.80 5.51 30.60 0.17 -3.63 16 4 C 0.14 4.83 5.72 86.38 0.49 5.33 16 5 N -0.58 -23.55 2.44 -706.32 -1.73 -25.27 16 6 C -0.25 -11.97 9.48 84.03 0.80 -11.17 16 7 H 0.05 2.56 7.93 -2.91 -0.02 2.53 16 8 C -0.02 -0.97 4.95 84.86 0.42 -0.55 16 9 N -0.90 -45.40 11.33 21.65 0.25 -45.15 16 10 Si 0.93 40.20 29.61 68.60 2.03 42.23 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 14 C 0.16 5.92 5.45 85.63 0.47 6.39 16 15 C 0.01 0.44 5.44 -19.83 -0.11 0.34 16 16 C -0.15 -3.64 7.83 22.28 0.17 -3.46 16 17 C 0.18 4.64 7.28 22.67 0.16 4.81 16 18 F -0.12 -3.10 16.81 44.97 0.76 -2.34 16 19 C -0.13 -3.59 5.75 -21.22 -0.12 -3.71 16 20 C 0.27 8.51 14.63 88.32 1.29 9.80 16 21 N -0.44 -14.73 18.54 19.01 0.35 -14.38 16 22 C 0.17 5.25 7.28 22.67 0.16 5.42 16 23 F -0.13 -4.18 16.81 44.97 0.76 -3.42 16 24 C -0.15 -4.83 9.65 22.28 0.22 -4.61 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.69 6.14 -2.39 -0.01 1.68 16 32 H 0.06 1.75 7.83 -2.39 -0.02 1.73 16 33 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.26 12.60 8.31 -92.71 -0.77 11.83 16 35 H 0.09 3.88 5.26 -2.38 -0.01 3.86 16 36 H 0.07 2.15 7.79 -2.39 -0.02 2.13 16 37 H 0.17 3.45 8.03 -2.91 -0.02 3.42 16 38 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -51.56 337.98 8.52 -43.05 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.08 Total: 5.29 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.02 Total: 0.00 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.13 Total: -84.81 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.51 Total: -5.76 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -51.56 8.52 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140755240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.725 kcal (2) G-P(sol) polarization free energy of solvation -51.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds