Wall clock time and date at job start Tue Mar 31 2020 07:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38530 * 120.00586 * 2 1 4 4 N 1.32918 * 120.47674 * 359.71689 * 3 2 1 5 5 C 1.32509 * 120.60318 * 180.27637 * 4 3 2 6 6 S 1.76201 * 119.18057 * 179.97438 * 5 4 3 7 7 C 1.80995 * 99.99954 * 180.02562 * 6 5 4 8 8 N 1.32557 * 121.63637 * 359.97438 * 5 4 3 9 9 C 1.32469 * 120.92459 * 0.02562 * 8 5 4 10 10 C 1.38145 * 119.29762 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.75080 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47230 * 260.02129 * 11 10 9 13 13 C 1.47481 * 110.99868 * 265.97391 * 12 11 10 14 14 C 1.53515 * 87.93060 * 221.29385 * 13 12 11 15 15 C 1.50698 * 114.34755 * 139.68396 * 14 13 12 16 16 H 1.07998 * 119.99610 * 266.07902 * 15 14 13 17 17 C 1.37876 * 120.00176 * 86.07240 * 15 14 13 18 18 N 1.31515 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99959 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47358 * 59.99870 * 19 17 15 21 21 H 1.48503 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46986 * 299.99946 * 19 17 15 23 23 C 1.47474 * 111.00466 * 170.00054 * 12 11 10 24 24 H 1.08998 * 109.46931 * 60.00254 * 1 2 3 25 25 H 1.08999 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46645 * 300.00175 * 1 2 3 27 27 H 0.97005 * 119.99387 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47490 * 299.99983 * 7 6 5 29 29 H 1.08998 * 109.47350 * 60.00018 * 7 6 5 30 30 H 1.09004 * 109.47327 * 180.02562 * 7 6 5 31 31 H 1.07995 * 120.35117 * 180.02562 * 9 8 5 32 32 H 1.08998 * 109.47380 * 20.01793 * 11 10 9 33 33 H 1.08998 * 109.47786 * 140.02014 * 11 10 9 34 34 H 1.08996 * 113.47481 * 336.05495 * 13 12 11 35 35 H 1.08992 * 113.48017 * 106.52569 * 13 12 11 36 36 H 1.09001 * 114.16785 * 272.37824 * 14 13 12 37 37 H 0.96999 * 119.99853 * 180.02562 * 18 17 15 38 38 H 1.09000 * 113.47396 * 253.47060 * 23 12 11 39 39 H 1.08997 * 113.47641 * 23.87500 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1578 1.1996 0.0000 4 7 1.5030 2.3563 -0.0057 5 6 2.1631 3.5052 -0.0112 6 16 1.2572 5.0165 -0.0193 7 6 2.6244 6.2025 -0.0254 8 7 3.4880 3.5458 -0.0108 9 6 4.2033 2.4309 -0.0053 10 6 3.5543 1.2114 0.0006 11 6 4.3356 -0.0772 0.0064 12 7 4.3838 -0.6267 -1.3552 13 6 3.2966 -1.5995 -1.5713 14 6 4.3076 -2.4791 -2.3201 15 6 4.1808 -3.9532 -2.0335 16 1 4.7843 -4.4070 -1.2614 17 6 3.2942 -4.7224 -2.7569 18 7 2.5596 -4.1698 -3.6975 19 14 3.1366 -6.5494 -2.4011 20 1 2.7133 -6.7444 -0.9912 21 1 2.1239 -7.1450 -3.3095 22 1 4.4476 -7.2113 -2.6204 23 6 5.3323 -1.7530 -1.4374 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.2356 6.0572 0.8654 29 1 3.2357 6.0477 -0.9145 30 1 2.2256 7.2169 -0.0304 31 1 5.2824 2.4748 -0.0046 32 1 5.3497 0.1143 0.3569 33 1 3.8509 -0.7932 0.6701 34 1 2.9277 -2.0502 -0.6500 35 1 2.4956 -1.2215 -2.2066 36 1 4.3946 -2.2533 -3.3829 37 1 1.9356 -4.7109 -4.2061 38 1 6.2566 -1.5050 -1.9592 39 1 5.5074 -2.2440 -0.4801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140836956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:17 Heat of formation + Delta-G solvation = 90.306890 kcal Electronic energy + Delta-G solvation = -21363.230387 eV Core-core repulsion = 18240.465565 eV Total energy + Delta-G solvation = -3122.764822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82947 -38.99620 -36.19435 -33.59926 -32.57990 -31.95586 -29.25054 -28.63988 -26.53364 -26.02659 -24.94715 -23.72882 -22.77428 -21.45417 -19.22026 -18.49640 -17.53902 -16.80451 -16.10263 -15.47237 -15.09085 -14.88410 -14.72886 -14.34262 -14.14607 -13.98450 -13.81806 -13.43447 -13.25993 -13.14537 -12.71672 -12.20742 -12.05644 -11.75430 -11.46205 -11.07751 -11.05073 -10.94506 -10.75736 -10.48114 -10.40551 -10.19160 -9.84477 -9.32933 -9.09073 -9.04973 -8.55183 -8.18483 -8.14824 -7.56761 -6.14974 -4.20929 1.06920 1.28590 1.54433 2.14677 3.22666 3.29073 3.29836 3.30616 3.91193 4.31589 4.46360 4.84043 4.86180 4.98860 5.05565 5.11694 5.13541 5.17445 5.35438 5.42317 5.66081 5.71262 5.75266 5.85822 5.92611 6.00014 6.17166 6.21913 6.36509 6.54242 6.56462 6.84510 6.96382 6.99958 7.21496 7.60818 7.65675 7.78794 7.91518 8.24314 8.25362 8.82824 9.45026 10.94084 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.003609 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.036366 B = 7757.078508 C = 8313.856282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.709 5.709 3 C 0.458 3.542 4 N -0.559 5.559 5 C 0.330 3.670 6 S -0.016 6.016 7 C -0.139 4.139 8 N -0.569 5.569 9 C 0.191 3.809 10 C -0.232 4.232 11 C 0.072 3.928 12 N -0.477 5.477 13 C 0.000 4.000 14 C 0.046 3.954 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.007 4.007 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.418 0.582 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.065 0.935 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 14.239 8.918 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.345 5.345 3 C 0.210 3.790 4 N -0.287 5.287 5 C -0.048 4.048 6 S 0.217 5.783 7 C -0.308 4.308 8 N -0.292 5.292 9 C 0.027 3.973 10 C -0.245 4.245 11 C -0.058 4.058 12 N -0.199 5.199 13 C -0.129 4.129 14 C 0.027 3.973 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.135 4.135 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.260 0.740 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.182 0.818 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.877 15.897 8.365 18.193 hybrid contribution 1.669 -3.093 0.780 3.600 sum -1.209 12.804 9.145 15.780 Atomic orbital electron populations 1.21524 0.79127 1.02105 1.01979 1.44865 1.07174 1.04928 1.77576 1.18317 0.87872 0.86469 0.86386 1.67934 1.39739 0.96437 1.24575 1.24348 0.90027 0.96226 0.94204 1.85629 1.09650 0.91716 1.91347 1.23487 1.00524 0.99590 1.07212 1.68685 1.05957 1.31880 1.22628 1.22627 0.99947 0.86172 0.88549 1.20769 0.93063 0.98049 1.12580 1.21320 0.98914 0.92337 0.93224 1.69002 1.07366 1.22472 1.21090 1.24185 0.96385 0.92832 0.99532 1.20061 0.88631 0.93279 0.95351 1.20985 1.22753 0.92695 1.19455 0.92373 1.25024 0.95501 0.98445 0.94550 1.69956 1.24190 1.36129 1.21779 0.86674 0.77990 0.85259 0.78186 1.20232 1.21199 1.20089 1.24055 0.97622 0.91411 1.00441 0.92204 0.90700 0.92579 0.73952 0.89275 0.89156 0.88074 0.81831 0.90297 0.93704 0.93284 0.91474 0.91657 0.92693 0.91667 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 10.75 59.85 0.64 1.95 16 2 N -0.71 -11.22 5.34 -67.06 -0.36 -11.58 16 3 C 0.46 7.80 7.49 -154.84 -1.16 6.64 16 4 N -0.56 -9.64 9.66 -12.68 -0.12 -9.76 16 5 C 0.33 5.28 7.85 -90.88 -0.71 4.56 16 6 S -0.02 -0.20 22.89 -107.50 -2.46 -2.66 16 7 C -0.14 -1.27 9.62 101.05 0.97 -0.30 16 8 N -0.57 -8.73 9.13 -13.53 -0.12 -8.85 16 9 C 0.19 2.82 10.94 -17.31 -0.19 2.63 16 10 C -0.23 -3.73 5.52 -104.13 -0.57 -4.30 16 11 C 0.07 1.14 4.71 -4.97 -0.02 1.11 16 12 N -0.48 -9.06 6.32 -246.11 -1.55 -10.61 16 13 C 0.00 -0.01 5.49 -7.55 -0.04 -0.05 16 14 C 0.05 1.09 3.76 -91.24 -0.34 0.75 16 15 C -0.52 -13.46 8.83 -34.44 -0.30 -13.76 16 16 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.88 -24.59 13.26 55.43 0.74 -23.85 16 19 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.01 -0.13 7.24 -7.55 -0.05 -0.19 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.42 6.75 4.00 -40.82 -0.16 6.59 16 28 H 0.09 0.83 8.11 -51.92 -0.42 0.41 16 29 H 0.09 0.88 8.11 -51.92 -0.42 0.46 16 30 H 0.10 0.66 8.14 -51.91 -0.42 0.23 16 31 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 33 H 0.04 0.70 6.52 -51.93 -0.34 0.36 16 34 H 0.05 1.01 5.91 -51.93 -0.31 0.70 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -29.13 334.75 -11.15 -40.28 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.40 Total: 5.99 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.89 Total: 0.75 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.42 Total: -64.65 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.46 Total: -2.66 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.13 -11.15 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140836956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.586 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds