Wall clock time and date at job start Tue Mar 31 2020 07:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38530 * 120.00586 * 2 1 4 4 N 1.32918 * 120.47674 * 359.71689 * 3 2 1 5 5 C 1.32509 * 120.60318 * 180.27637 * 4 3 2 6 6 S 1.76201 * 119.18057 * 179.97438 * 5 4 3 7 7 C 1.80995 * 99.99954 * 180.02562 * 6 5 4 8 8 N 1.32557 * 121.63637 * 359.97438 * 5 4 3 9 9 C 1.32469 * 120.92459 * 0.02562 * 8 5 4 10 10 C 1.38145 * 119.29762 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.75080 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47230 * 260.02129 * 11 10 9 13 13 C 1.47481 * 110.99868 * 265.97391 * 12 11 10 14 14 C 1.53515 * 87.93060 * 221.29385 * 13 12 11 15 15 C 1.50698 * 114.34755 * 139.68396 * 14 13 12 16 16 H 1.07998 * 119.99610 * 266.07902 * 15 14 13 17 17 C 1.37876 * 120.00176 * 86.07240 * 15 14 13 18 18 N 1.31515 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99959 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47358 * 59.99870 * 19 17 15 21 21 H 1.48503 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46986 * 299.99946 * 19 17 15 23 23 C 1.47474 * 111.00466 * 170.00054 * 12 11 10 24 24 H 1.08998 * 109.46931 * 60.00254 * 1 2 3 25 25 H 1.08999 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46645 * 300.00175 * 1 2 3 27 27 H 0.97005 * 119.99387 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47490 * 299.99983 * 7 6 5 29 29 H 1.08998 * 109.47350 * 60.00018 * 7 6 5 30 30 H 1.09004 * 109.47327 * 180.02562 * 7 6 5 31 31 H 1.07995 * 120.35117 * 180.02562 * 9 8 5 32 32 H 1.08998 * 109.47380 * 20.01793 * 11 10 9 33 33 H 1.08998 * 109.47786 * 140.02014 * 11 10 9 34 34 H 1.08996 * 113.47481 * 336.05495 * 13 12 11 35 35 H 1.08992 * 113.48017 * 106.52569 * 13 12 11 36 36 H 1.09001 * 114.16785 * 272.37824 * 14 13 12 37 37 H 0.96999 * 119.99853 * 180.02562 * 18 17 15 38 38 H 1.09000 * 113.47396 * 253.47060 * 23 12 11 39 39 H 1.08997 * 113.47641 * 23.87500 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1578 1.1996 0.0000 4 7 1.5030 2.3563 -0.0057 5 6 2.1631 3.5052 -0.0112 6 16 1.2572 5.0165 -0.0193 7 6 2.6244 6.2025 -0.0254 8 7 3.4880 3.5458 -0.0108 9 6 4.2033 2.4309 -0.0053 10 6 3.5543 1.2114 0.0006 11 6 4.3356 -0.0772 0.0064 12 7 4.3838 -0.6267 -1.3552 13 6 3.2966 -1.5995 -1.5713 14 6 4.3076 -2.4791 -2.3201 15 6 4.1808 -3.9532 -2.0335 16 1 4.7843 -4.4070 -1.2614 17 6 3.2942 -4.7224 -2.7569 18 7 2.5596 -4.1698 -3.6975 19 14 3.1366 -6.5494 -2.4011 20 1 2.7133 -6.7444 -0.9912 21 1 2.1239 -7.1450 -3.3095 22 1 4.4476 -7.2113 -2.6204 23 6 5.3323 -1.7530 -1.4374 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 3.2356 6.0572 0.8654 29 1 3.2357 6.0477 -0.9145 30 1 2.2256 7.2169 -0.0304 31 1 5.2824 2.4748 -0.0046 32 1 5.3497 0.1143 0.3569 33 1 3.8509 -0.7932 0.6701 34 1 2.9277 -2.0502 -0.6500 35 1 2.4956 -1.2215 -2.2066 36 1 4.3946 -2.2533 -3.3829 37 1 1.9356 -4.7109 -4.2061 38 1 6.2566 -1.5050 -1.9592 39 1 5.5074 -2.2440 -0.4801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140836956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:16 Heat of formation + Delta-G solvation = 71.107633 kcal Electronic energy + Delta-G solvation = -21364.062929 eV Core-core repulsion = 18240.465565 eV Total energy + Delta-G solvation = -3123.597364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.05264 -40.55514 -37.39227 -35.11813 -34.21476 -33.23519 -30.52521 -29.67981 -27.78775 -27.57429 -26.54814 -25.27748 -23.94597 -22.87123 -20.73787 -19.84262 -18.79582 -18.58546 -17.29049 -16.89220 -16.60880 -16.26842 -16.04122 -15.79565 -15.57828 -15.22726 -14.85692 -14.70899 -14.45042 -14.16142 -13.90281 -13.54658 -13.46260 -13.17238 -13.01574 -12.85081 -12.53628 -12.22299 -12.20909 -12.04362 -11.69996 -11.48628 -11.37755 -11.05937 -10.84219 -10.51060 -10.26853 -9.71851 -9.32619 -8.65317 -8.15288 -6.27262 -0.12870 0.25789 0.35160 1.28034 1.43598 1.44934 1.52389 2.11516 2.41920 2.69682 3.13951 3.35329 3.39264 3.65550 3.78918 3.89656 4.13636 4.25084 4.37937 4.40503 4.41409 4.44138 4.47330 4.57341 4.68237 4.75099 4.83137 4.84981 4.96979 5.01069 5.18895 5.24585 5.43858 5.61629 5.68123 5.83635 6.00371 6.27421 6.34286 6.44407 6.83070 7.04874 7.42063 8.93659 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.003609 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.036366 B = 7757.078508 C = 8313.856282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.714 5.714 3 C 0.440 3.560 4 N -0.580 5.580 5 C 0.313 3.687 6 S -0.019 6.019 7 C -0.129 4.129 8 N -0.570 5.570 9 C 0.193 3.807 10 C -0.248 4.248 11 C 0.077 3.923 12 N -0.480 5.480 13 C 0.020 3.980 14 C 0.022 3.978 15 C -0.529 4.529 16 H 0.064 0.936 17 C 0.017 3.983 18 N -0.921 5.921 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.270 1.270 23 C 0.011 3.989 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.414 0.586 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.196 0.804 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 14.936 10.491 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.349 5.349 3 C 0.192 3.808 4 N -0.308 5.308 5 C -0.064 4.064 6 S 0.213 5.787 7 C -0.298 4.298 8 N -0.293 5.293 9 C 0.029 3.971 10 C -0.261 4.261 11 C -0.052 4.052 12 N -0.202 5.202 13 C -0.110 4.110 14 C 0.003 3.997 15 C -0.567 4.567 16 H 0.082 0.918 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.195 1.195 23 C -0.118 4.118 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.256 0.744 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.212 0.788 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.872 16.609 9.954 19.454 hybrid contribution 1.371 -3.162 0.284 3.458 sum -0.502 13.448 10.238 16.909 Atomic orbital electron populations 1.21592 0.78154 1.03141 1.01714 1.44934 1.07904 1.04579 1.77528 1.18627 0.88667 0.86760 0.86724 1.67982 1.40341 0.96944 1.25559 1.25006 0.90718 0.97079 0.93622 1.85636 1.11271 0.91146 1.90606 1.23589 0.99264 0.99883 1.07059 1.68784 1.05694 1.31969 1.22830 1.23165 1.01359 0.85587 0.86948 1.20846 0.92750 0.98609 1.13926 1.21327 1.00611 0.92094 0.91166 1.68922 1.05815 1.21633 1.23818 1.23848 0.95574 0.92663 0.98869 1.20009 0.92306 0.93303 0.94093 1.21348 1.22278 0.93903 1.19217 0.91817 1.25806 0.95337 1.02687 0.94459 1.70096 1.25174 1.37612 1.23080 0.85659 0.77891 0.80141 0.78265 1.19149 1.21478 1.19543 1.23878 0.97075 0.90761 1.00068 0.93387 0.89033 0.91836 0.74395 0.89066 0.89533 0.84901 0.78774 0.87475 0.93389 0.92524 0.94248 0.95646 0.92946 0.90508 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.65 10.75 127.77 1.37 4.02 16 2 N -0.71 -22.63 5.34 -366.08 -1.95 -24.58 16 3 C 0.44 14.85 7.49 133.20 1.00 15.84 16 4 N -0.58 -19.88 9.66 -194.02 -1.87 -21.75 16 5 C 0.31 9.74 7.85 180.44 1.42 11.16 16 6 S -0.02 -0.45 22.89 -56.49 -1.29 -1.74 16 7 C -0.13 -2.06 9.62 113.37 1.09 -0.97 16 8 N -0.57 -16.57 9.13 -196.71 -1.80 -18.37 16 9 C 0.19 5.32 10.94 84.57 0.93 6.24 16 10 C -0.25 -7.64 5.52 -19.55 -0.11 -7.75 16 11 C 0.08 2.28 4.71 85.55 0.40 2.68 16 12 N -0.48 -17.70 6.32 -932.55 -5.89 -23.59 16 13 C 0.02 0.85 5.49 83.57 0.46 1.31 16 14 C 0.02 1.07 3.76 -11.20 -0.04 1.02 16 15 C -0.53 -27.37 8.83 25.60 0.23 -27.14 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.02 0.89 5.46 84.65 0.46 1.35 16 18 N -0.92 -52.56 13.26 21.45 0.28 -52.27 16 19 Si 0.96 41.53 29.54 68.60 2.03 43.55 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 C 0.01 0.40 7.24 83.57 0.61 1.01 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.41 13.36 4.00 -92.70 -0.37 12.99 16 28 H 0.09 1.47 8.11 -2.40 -0.02 1.45 16 29 H 0.09 1.50 8.11 -2.40 -0.02 1.48 16 30 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.11 2.57 7.98 -2.39 -0.02 2.55 16 33 H 0.05 1.41 6.52 -2.39 -0.02 1.39 16 34 H 0.06 2.32 5.91 -2.39 -0.01 2.30 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 Total: -1.00 -63.48 334.75 -2.00 -65.48 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.69 Total: 24.49 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 7.81 Total: 8.78 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -11.23 Total: -140.56 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.29 Total: -1.74 kcal Total: -63.48 -2.00 -65.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140836956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.585 kcal (2) G-P(sol) polarization free energy of solvation -63.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds