Wall clock time and date at job start Tue Mar 31 2020 07:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00058 * 2 1 4 4 C 1.39680 * 120.00273 * 180.02562 * 2 1 3 5 5 C 1.38947 * 120.06219 * 5.71671 * 4 2 1 6 6 C 1.38089 * 119.94859 * 180.02562 * 5 4 2 7 7 C 1.38292 * 120.08698 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.93058 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47189 * 105.00077 * 8 7 6 10 10 C 1.47479 * 110.99961 * 265.96478 * 9 8 7 11 11 C 1.53503 * 87.93384 * 221.29773 * 10 9 8 12 12 C 1.50706 * 114.34439 * 139.68835 * 11 10 9 13 13 H 1.07999 * 119.99967 * 266.07914 * 12 11 10 14 14 C 1.37879 * 119.99723 * 86.07070 * 12 11 10 15 15 N 1.31512 * 119.99746 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00425 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47021 * 89.99220 * 16 14 12 18 18 H 1.48498 * 109.47321 * 209.99423 * 16 14 12 19 19 H 1.48502 * 109.47000 * 329.99847 * 16 14 12 20 20 C 1.47482 * 110.99860 * 169.99667 * 9 8 7 21 21 C 1.38386 * 120.13660 * 359.95810 * 7 6 5 22 22 Cl 1.73591 * 119.97636 * 180.02562 * 21 7 6 23 23 C 1.38245 * 120.04714 * 359.76209 * 21 7 6 24 24 H 1.09008 * 109.47224 * 174.94543 * 1 2 3 25 25 H 1.09000 * 109.47057 * 54.94460 * 1 2 3 26 26 H 1.08994 * 109.47148 * 294.94452 * 1 2 3 27 27 H 1.09004 * 109.46791 * 90.00296 * 3 2 1 28 28 H 1.09005 * 109.46907 * 210.00053 * 3 2 1 29 29 H 1.09002 * 109.47118 * 330.00077 * 3 2 1 30 30 H 1.07997 * 120.02482 * 0.02562 * 5 4 2 31 31 H 1.08001 * 119.95704 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46863 * 224.99967 * 8 7 6 33 33 H 1.09001 * 109.47517 * 344.99689 * 8 7 6 34 34 H 1.09001 * 113.48029 * 336.07248 * 10 9 8 35 35 H 1.09008 * 113.47039 * 106.53095 * 10 9 8 36 36 H 1.09003 * 114.17183 * 272.37925 * 11 10 9 37 37 H 0.96997 * 120.00492 * 180.02562 * 15 14 12 38 38 H 1.08997 * 113.48179 * 253.46802 * 20 9 8 39 39 H 1.09003 * 113.47793 * 23.88108 * 20 9 8 40 40 H 1.07991 * 120.04617 * 180.27763 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4752 -2.4107 -0.1209 6 6 2.1680 -3.6052 -0.1206 7 6 3.5457 -3.6076 -0.0002 8 6 4.2982 -4.9132 0.0003 9 7 4.9681 -5.0927 -1.2947 10 6 4.1322 -5.8836 -2.2171 11 6 5.4071 -6.6187 -2.6537 12 6 5.2299 -8.1011 -2.8592 13 1 5.4478 -8.7877 -2.0545 14 6 4.7895 -8.5808 -4.0745 15 7 4.6344 -9.8744 -4.2537 16 14 4.4132 -7.3933 -5.4665 17 1 5.6385 -7.1762 -6.2769 18 1 3.3449 -7.9620 -6.3271 19 1 3.9570 -6.0977 -4.9022 20 6 5.9024 -6.2331 -1.2528 21 6 4.2347 -2.4134 0.1195 22 17 5.9641 -2.4212 0.2697 23 6 3.5473 -1.2140 0.1141 24 1 -0.3634 -1.0237 -0.0905 25 1 -0.3633 0.5903 -0.8412 26 1 -0.3633 0.4334 0.9317 27 1 2.3792 1.5833 1.0277 28 1 3.1499 1.1383 -0.5139 29 1 1.6084 2.0284 -0.5138 30 1 0.3993 -2.4100 -0.2145 31 1 1.6332 -4.5389 -0.2137 32 1 5.0427 -4.9031 0.7963 33 1 3.6008 -5.7345 0.1655 34 1 3.4129 -6.5259 -1.7089 35 1 3.6801 -5.2892 -3.0112 36 1 5.9461 -6.1329 -3.4670 37 1 4.3250 -10.2120 -5.1088 38 1 6.9506 -5.9352 -1.2296 39 1 5.6562 -6.9683 -0.4866 40 1 4.0854 -0.2820 0.2030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140921841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:41 Heat of formation + Delta-G solvation = 71.450507 kcal Electronic energy + Delta-G solvation = -21065.712598 eV Core-core repulsion = 17907.793645 eV Total energy + Delta-G solvation = -3157.918954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93298 -38.89061 -36.81010 -35.80575 -32.75222 -31.58600 -31.03286 -28.69038 -28.32637 -26.12974 -24.92338 -24.12441 -22.44192 -21.89710 -20.32060 -18.55952 -17.62756 -16.96894 -16.21299 -15.43268 -15.30936 -15.05407 -14.78196 -14.46375 -14.07118 -13.86012 -13.71938 -13.07528 -12.93232 -12.83943 -12.53942 -12.37936 -12.29905 -11.95937 -11.68116 -11.45492 -11.31799 -10.98972 -10.92481 -10.57927 -10.22775 -9.97915 -9.91202 -9.74304 -9.33437 -9.07220 -8.68444 -8.51540 -8.03968 -7.34385 -6.07327 -4.07167 1.31153 1.51826 2.35438 2.96463 3.32938 3.41031 3.47534 3.74564 4.45806 4.66195 4.71962 4.91853 4.94332 5.03219 5.08827 5.18051 5.23388 5.29842 5.36625 5.42630 5.48645 5.54989 5.69033 5.79026 5.91105 6.00059 6.09310 6.19595 6.36269 6.39368 6.51627 6.60452 6.64077 6.66556 6.84050 7.02970 7.11558 7.29641 7.42195 7.73504 7.95517 8.52839 8.96128 9.56297 11.05270 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.004028 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.334107 B = 6949.532689 C = 7683.586219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.216 3.784 5 C -0.196 4.196 6 C -0.055 4.055 7 C -0.110 4.110 8 C 0.061 3.939 9 N -0.470 5.470 10 C -0.009 4.009 11 C 0.000 4.000 12 C -0.509 4.509 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.901 5.901 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.257 1.257 20 C 0.011 3.989 21 C 0.034 3.966 22 Cl -0.063 7.063 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 21.025 10.434 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.353 5.353 3 C -0.049 4.049 4 C 0.115 3.885 5 C -0.218 4.218 6 C -0.074 4.074 7 C -0.113 4.113 8 C -0.067 4.067 9 N -0.192 5.192 10 C -0.138 4.138 11 C -0.020 4.020 12 C -0.547 4.547 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.538 5.538 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.181 1.181 20 C -0.118 4.118 21 C 0.006 3.994 22 Cl -0.033 7.033 23 C -0.217 4.217 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.939 21.738 10.170 24.982 hybrid contribution -0.549 -0.147 -0.485 0.747 sum -7.488 21.590 9.685 24.819 Atomic orbital electron populations 1.21681 0.79513 1.03173 1.00819 1.46214 1.04907 1.02988 1.81176 1.21597 0.97281 0.84917 1.01062 1.17570 0.90485 0.85829 0.94587 1.20721 0.99821 0.90999 1.10246 1.20799 0.92821 0.97688 0.96092 1.19504 0.93243 0.94163 1.04364 1.21522 0.97191 0.92887 0.95113 1.68915 1.10750 1.32875 1.06703 1.24404 0.98493 0.94718 0.96166 1.20496 0.92294 0.96257 0.92918 1.20938 1.44846 0.89464 0.99453 0.90836 1.25004 0.94560 0.94853 0.98439 1.69911 1.46609 1.12487 1.24821 0.86883 0.78336 0.82312 0.82270 1.20328 1.21600 1.18066 1.23766 0.96957 0.91131 0.99953 1.20402 0.84587 0.93683 1.00705 1.98357 1.10322 1.98838 1.95823 1.20393 0.92276 0.97218 1.11800 0.90277 0.92716 0.93115 0.93495 0.91289 0.91643 0.85606 0.85354 0.90635 0.93103 0.91905 0.92084 0.92707 0.92662 0.91640 0.92198 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.62 59.84 0.64 1.29 16 2 N -0.64 -6.25 3.41 -187.55 -0.64 -6.89 16 3 C 0.09 0.71 10.11 59.85 0.60 1.32 16 4 C 0.22 2.65 6.54 -83.79 -0.55 2.10 16 5 C -0.20 -2.39 9.31 -39.37 -0.37 -2.76 16 6 C -0.05 -0.75 9.66 -39.62 -0.38 -1.13 16 7 C -0.11 -1.69 5.47 -104.55 -0.57 -2.26 16 8 C 0.06 1.02 4.27 -4.98 -0.02 1.00 16 9 N -0.47 -9.13 6.21 -246.11 -1.53 -10.66 16 10 C -0.01 -0.19 6.70 -7.56 -0.05 -0.24 16 11 C 0.00 -0.01 2.95 -91.24 -0.27 -0.27 16 12 C -0.51 -14.14 9.38 -34.44 -0.32 -14.46 16 13 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 16 Si 0.87 21.51 27.14 -169.99 -4.61 16.90 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.26 -6.05 5.68 56.52 0.32 -5.73 16 20 C 0.01 0.22 7.25 -7.55 -0.05 0.16 16 21 C 0.03 0.51 6.31 -39.52 -0.25 0.26 16 22 Cl -0.06 -0.92 27.53 -51.86 -1.43 -2.35 16 23 C -0.19 -2.53 8.94 -39.35 -0.35 -2.88 16 24 H 0.08 0.55 5.31 -51.92 -0.28 0.28 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 29 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 30 H 0.13 1.25 5.74 -52.49 -0.30 0.94 16 31 H 0.13 1.62 8.00 -52.49 -0.42 1.20 16 32 H 0.08 1.21 7.52 -51.93 -0.39 0.82 16 33 H 0.05 0.83 7.11 -51.93 -0.37 0.47 16 34 H 0.06 1.35 7.38 -51.93 -0.38 0.97 16 35 H 0.06 1.34 7.11 -51.92 -0.37 0.97 16 36 H 0.05 1.33 7.04 -51.93 -0.37 0.97 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.22 7.87 -51.93 -0.41 0.81 16 40 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -30.86 333.93 -10.14 -41.01 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.70 Total: -0.59 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.05 Total: -15.88 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -1.39 Total: -44.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.61 Total: 16.90 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.43 Total: -2.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.86 -10.14 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140921841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.458 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds