Wall clock time and date at job start Tue Mar 31 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36143 * 124.87153 * 2 1 4 4 C 1.35797 * 109.76664 * 179.97438 * 3 2 1 5 5 C 1.47882 * 126.69222 * 179.48543 * 4 3 2 6 6 C 1.40057 * 120.52692 * 359.95743 * 5 4 3 7 7 C 1.38189 * 118.43931 * 179.97438 * 6 5 4 8 8 N 1.32441 * 119.31805 * 0.02562 * 7 6 5 9 9 C 1.32547 * 121.01841 * 359.97438 * 8 7 6 10 10 N 1.38446 * 119.14964 * 179.97438 * 9 8 7 11 11 C 1.36995 * 119.99670 * 359.97438 * 10 9 8 12 12 H 1.07999 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.38829 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31542 * 120.00463 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99751 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46987 * 60.00229 * 15 13 11 17 17 H 1.48503 * 109.47065 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47204 * 300.00128 * 15 13 11 19 19 N 1.32427 * 121.70246 * 359.74801 * 9 8 7 20 20 C 1.47246 * 106.61710 * 359.45016 * 4 3 2 21 21 C 1.39370 * 134.00230 * 180.02562 * 20 4 3 22 22 C 1.36719 * 119.78446 * 179.71842 * 21 20 4 23 23 C 1.38775 * 120.46973 * 0.25967 * 22 21 20 24 24 C 1.37776 * 120.63824 * 359.97438 * 23 22 21 25 25 C 1.37833 * 124.88224 * 179.17085 * 2 1 3 26 26 H 1.09000 * 109.47410 * 270.83135 * 1 2 3 27 27 H 1.08995 * 109.48078 * 30.83251 * 1 2 3 28 28 H 1.09006 * 109.46859 * 150.83477 * 1 2 3 29 29 H 1.07996 * 125.11643 * 359.40391 * 3 2 1 30 30 H 1.08001 * 120.77757 * 359.95129 * 6 5 4 31 31 H 1.08002 * 120.34091 * 179.97438 * 7 6 5 32 32 H 0.96993 * 120.00114 * 180.02562 * 10 9 8 33 33 H 0.96993 * 120.00253 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.11242 * 0.02562 * 21 20 4 35 35 H 1.07997 * 119.76672 * 180.27606 * 22 21 20 36 36 H 1.07995 * 119.68436 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.10882 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2433 1.1170 0.0000 4 6 3.5544 0.7631 0.0006 5 6 4.7165 1.6776 -0.0099 6 6 4.5294 3.0656 -0.0228 7 6 5.6457 3.8800 -0.0317 8 7 6.8502 3.3294 -0.0283 9 6 6.9992 2.0124 -0.0160 10 7 8.2764 1.4782 -0.0134 11 6 9.3661 2.3084 -0.0240 12 1 9.2287 3.3796 -0.0340 13 6 10.6469 1.7727 -0.0220 14 7 10.8142 0.4680 -0.0103 15 14 12.1327 2.9048 -0.0357 16 1 12.1049 3.7727 1.1690 17 1 13.3750 2.0911 -0.0316 18 1 12.0995 3.7505 -1.2559 19 7 5.9579 1.1944 -0.0017 20 6 3.5933 -0.7088 0.0145 21 6 4.6210 -1.6501 0.0217 22 6 4.3203 -2.9837 0.0407 23 6 2.9987 -3.4071 0.0475 24 6 1.9684 -2.4925 0.0357 25 6 2.2532 -1.1306 0.0164 26 1 -0.3634 0.0149 1.0275 27 1 -0.3635 0.8823 -0.5267 28 1 -0.3633 -0.8974 -0.5008 29 1 1.8738 2.1317 -0.0092 30 1 3.5360 3.4893 -0.0261 31 1 5.5370 4.9545 -0.0422 32 1 8.3997 0.5162 -0.0049 33 1 11.7090 0.0938 -0.0085 34 1 5.6516 -1.3272 0.0173 35 1 5.1169 -3.7129 0.0508 36 1 2.7757 -4.4637 0.0630 37 1 0.9430 -2.8315 0.0407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:26 Heat of formation + Delta-G solvation = 120.773862 kcal Electronic energy + Delta-G solvation = -21981.137443 eV Core-core repulsion = 18724.249817 eV Total energy + Delta-G solvation = -3256.887626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21637 -39.41115 -36.92972 -35.37796 -33.55196 -32.13989 -31.56766 -30.16129 -29.61437 -28.31468 -26.36826 -24.94296 -23.23745 -22.62503 -21.85663 -21.08154 -19.53533 -17.97554 -17.27819 -16.49641 -16.06752 -15.58210 -15.39373 -15.15965 -14.58217 -14.31811 -13.85311 -13.82645 -13.74181 -13.46453 -13.23944 -12.89750 -12.67301 -12.53755 -12.13164 -11.60522 -11.39818 -11.37118 -11.20088 -10.65326 -10.55399 -10.51060 -10.33445 -9.99991 -9.63376 -9.14651 -8.80018 -8.03732 -7.84710 -7.49527 -7.07361 -6.56426 -3.76791 1.21679 1.74753 2.04776 2.36597 2.78709 3.17399 3.20144 3.23641 3.31367 4.02174 4.18503 4.51916 4.69524 4.78181 4.84766 4.92221 4.98536 5.06087 5.20770 5.28831 5.33481 5.42424 5.46560 5.75225 5.78524 5.90781 5.99472 6.18725 6.29778 6.39965 6.43289 6.60453 6.80951 6.83613 7.01842 7.06430 7.32920 7.35522 7.39778 7.51360 7.89564 8.35942 8.68697 9.08978 9.32136 9.91698 10.59883 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.003919 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.997124 B = 7142.803365 C = 8448.638625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.485 5.485 3 C 0.077 3.923 4 C -0.118 4.118 5 C 0.296 3.704 6 C -0.365 4.365 7 C 0.197 3.803 8 N -0.582 5.582 9 C 0.502 3.498 10 N -0.504 5.504 11 C -0.280 4.280 12 H 0.115 0.885 13 C 0.018 3.982 14 N -0.888 5.888 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.271 1.271 19 N -0.589 5.589 20 C -0.075 4.075 21 C -0.047 4.047 22 C -0.155 4.155 23 C -0.101 4.101 24 C -0.138 4.138 25 C 0.086 3.914 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.174 0.826 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.410 0.590 33 H 0.277 0.723 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 -2.696 -0.014 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.168 5.168 3 C -0.052 4.052 4 C -0.126 4.126 5 C 0.144 3.856 6 C -0.397 4.397 7 C 0.025 3.975 8 N -0.308 5.308 9 C 0.147 3.853 10 N -0.115 5.115 11 C -0.412 4.412 12 H 0.133 0.867 13 C -0.186 4.186 14 N -0.525 5.525 15 Si 0.766 3.234 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.196 1.196 19 N -0.315 5.315 20 C -0.080 4.080 21 C -0.065 4.065 22 C -0.175 4.175 23 C -0.120 4.120 24 C -0.159 4.159 25 C -0.018 4.018 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.191 0.809 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.644 -3.202 -0.015 17.932 hybrid contribution -0.209 0.464 0.006 0.509 sum -17.854 -2.738 -0.009 18.062 Atomic orbital electron populations 1.21911 0.77270 1.04070 1.02847 1.43547 1.05756 1.04300 1.63173 1.21738 0.89573 0.90976 1.02897 1.18660 0.90665 0.90787 1.12524 1.18643 0.88743 0.89490 0.88742 1.21616 0.99702 0.94099 1.24266 1.22392 0.87277 0.99078 0.88761 1.67857 1.25771 1.12172 1.25028 1.19025 0.86236 0.84986 0.95101 1.40530 0.99830 1.09330 1.61770 1.19942 0.82854 0.92342 1.46029 0.86739 1.25424 0.99376 0.96544 0.97228 1.69681 1.24440 1.10516 1.47889 0.85760 0.79192 0.79172 0.79241 1.19636 1.20817 1.19640 1.67706 0.98062 1.39445 1.26308 1.18997 0.91712 0.92487 1.04807 1.20639 0.99749 0.91410 0.94740 1.20719 0.96251 0.95780 1.04707 1.20760 0.92425 0.98488 1.00320 1.19882 0.99071 0.89061 1.07885 1.18288 0.90086 0.88185 1.05274 0.91410 0.89908 0.90226 0.80905 0.86636 0.83884 0.75296 0.91343 0.84373 0.86131 0.86189 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.00 59.84 0.66 1.23 16 2 N -0.48 -5.93 3.16 -121.57 -0.38 -6.31 16 3 C 0.08 1.03 10.73 -16.51 -0.18 0.86 16 4 C -0.12 -2.09 6.27 -103.16 -0.65 -2.74 16 5 C 0.30 6.06 6.79 -82.64 -0.56 5.50 16 6 C -0.36 -6.65 9.68 -38.92 -0.38 -7.03 16 7 C 0.20 3.86 11.28 -17.31 -0.20 3.66 16 8 N -0.58 -14.03 9.09 -13.99 -0.13 -14.16 16 9 C 0.50 12.76 8.38 -322.76 -2.70 10.05 16 10 N -0.50 -13.52 5.43 -12.80 -0.07 -13.59 16 11 C -0.28 -7.66 9.69 -15.03 -0.15 -7.80 16 12 H 0.11 3.13 7.04 -52.49 -0.37 2.76 16 13 C 0.02 0.49 5.50 -17.46 -0.10 0.39 16 14 N -0.89 -24.22 13.05 55.49 0.72 -23.49 16 15 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 19 N -0.59 -13.88 9.28 -10.46 -0.10 -13.98 16 20 C -0.08 -1.33 6.27 -104.97 -0.66 -1.99 16 21 C -0.05 -0.83 9.79 -39.71 -0.39 -1.22 16 22 C -0.16 -2.27 9.98 -39.93 -0.40 -2.67 16 23 C -0.10 -1.27 10.01 -39.55 -0.40 -1.67 16 24 C -0.14 -1.75 9.94 -39.41 -0.39 -2.14 16 25 C 0.09 1.26 6.79 -83.98 -0.57 0.69 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 29 H 0.17 1.71 7.30 -52.49 -0.38 1.32 16 30 H 0.12 1.64 7.12 -52.49 -0.37 1.27 16 31 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.41 11.12 8.01 -40.82 -0.33 10.80 16 33 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.14 2.71 7.25 -52.49 -0.38 2.33 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.11 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -31.92 324.59 -11.06 -42.98 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -3.92 Total: 13.03 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -7.05 Total: -4.87 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: 0.05 Total: -71.53 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.92 -11.06 -42.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.749 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds