Wall clock time and date at job start Tue Mar 31 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36143 * 124.87153 * 2 1 4 4 C 1.35797 * 109.76664 * 179.97438 * 3 2 1 5 5 C 1.47882 * 126.69222 * 179.48543 * 4 3 2 6 6 C 1.40057 * 120.52692 * 359.95743 * 5 4 3 7 7 C 1.38189 * 118.43931 * 179.97438 * 6 5 4 8 8 N 1.32441 * 119.31805 * 0.02562 * 7 6 5 9 9 C 1.32547 * 121.01841 * 359.97438 * 8 7 6 10 10 N 1.38446 * 119.14964 * 179.97438 * 9 8 7 11 11 C 1.36995 * 119.99670 * 359.97438 * 10 9 8 12 12 H 1.07999 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.38829 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31542 * 120.00463 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99751 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46987 * 60.00229 * 15 13 11 17 17 H 1.48503 * 109.47065 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47204 * 300.00128 * 15 13 11 19 19 N 1.32427 * 121.70246 * 359.74801 * 9 8 7 20 20 C 1.47246 * 106.61710 * 359.45016 * 4 3 2 21 21 C 1.39370 * 134.00230 * 180.02562 * 20 4 3 22 22 C 1.36719 * 119.78446 * 179.71842 * 21 20 4 23 23 C 1.38775 * 120.46973 * 0.25967 * 22 21 20 24 24 C 1.37776 * 120.63824 * 359.97438 * 23 22 21 25 25 C 1.37833 * 124.88224 * 179.17085 * 2 1 3 26 26 H 1.09000 * 109.47410 * 270.83135 * 1 2 3 27 27 H 1.08995 * 109.48078 * 30.83251 * 1 2 3 28 28 H 1.09006 * 109.46859 * 150.83477 * 1 2 3 29 29 H 1.07996 * 125.11643 * 359.40391 * 3 2 1 30 30 H 1.08001 * 120.77757 * 359.95129 * 6 5 4 31 31 H 1.08002 * 120.34091 * 179.97438 * 7 6 5 32 32 H 0.96993 * 120.00114 * 180.02562 * 10 9 8 33 33 H 0.96993 * 120.00253 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.11242 * 0.02562 * 21 20 4 35 35 H 1.07997 * 119.76672 * 180.27606 * 22 21 20 36 36 H 1.07995 * 119.68436 * 180.02562 * 23 22 21 37 37 H 1.08002 * 120.10882 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2433 1.1170 0.0000 4 6 3.5544 0.7631 0.0006 5 6 4.7165 1.6776 -0.0099 6 6 4.5294 3.0656 -0.0228 7 6 5.6457 3.8800 -0.0317 8 7 6.8502 3.3294 -0.0283 9 6 6.9992 2.0124 -0.0160 10 7 8.2764 1.4782 -0.0134 11 6 9.3661 2.3084 -0.0240 12 1 9.2287 3.3796 -0.0340 13 6 10.6469 1.7727 -0.0220 14 7 10.8142 0.4680 -0.0103 15 14 12.1327 2.9048 -0.0357 16 1 12.1049 3.7727 1.1690 17 1 13.3750 2.0911 -0.0316 18 1 12.0995 3.7505 -1.2559 19 7 5.9579 1.1944 -0.0017 20 6 3.5933 -0.7088 0.0145 21 6 4.6210 -1.6501 0.0217 22 6 4.3203 -2.9837 0.0407 23 6 2.9987 -3.4071 0.0475 24 6 1.9684 -2.4925 0.0357 25 6 2.2532 -1.1306 0.0164 26 1 -0.3634 0.0149 1.0275 27 1 -0.3635 0.8823 -0.5267 28 1 -0.3633 -0.8974 -0.5008 29 1 1.8738 2.1317 -0.0092 30 1 3.5360 3.4893 -0.0261 31 1 5.5370 4.9545 -0.0422 32 1 8.3997 0.5162 -0.0049 33 1 11.7090 0.0938 -0.0085 34 1 5.6516 -1.3272 0.0173 35 1 5.1169 -3.7129 0.0508 36 1 2.7757 -4.4637 0.0630 37 1 0.9430 -2.8315 0.0407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:26 Heat of formation + Delta-G solvation = 103.333217 kcal Electronic energy + Delta-G solvation = -21981.893726 eV Core-core repulsion = 18724.249817 eV Total energy + Delta-G solvation = -3257.643909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31641 -41.11099 -38.00058 -37.17710 -34.92648 -33.95605 -33.00376 -31.23043 -31.13183 -29.54656 -27.42415 -26.79595 -24.67305 -23.94716 -23.29021 -22.22546 -20.83252 -19.82662 -18.67626 -17.88625 -17.33888 -17.04058 -16.40930 -16.29115 -16.15369 -15.88698 -15.57921 -15.35963 -14.91360 -14.77045 -14.70008 -13.85587 -13.74855 -13.49474 -13.41302 -13.11202 -13.10270 -12.48614 -12.46350 -12.43267 -12.11249 -12.04693 -11.80753 -11.57067 -11.24799 -10.80492 -10.28205 -9.56484 -9.19001 -9.11286 -8.48472 -8.35336 -5.80478 0.00865 0.50977 0.70385 0.79747 1.40884 1.49939 1.54073 1.86937 1.95837 2.24764 2.84990 2.93658 3.06081 3.58229 3.62412 3.79736 3.83065 4.03748 4.13404 4.27783 4.32279 4.43769 4.55537 4.65345 4.73701 4.77139 4.81344 4.84489 4.90602 4.93192 5.17711 5.24898 5.39327 5.56906 5.68603 5.72600 5.82864 5.85184 6.11284 6.26534 6.39427 6.69267 6.74047 7.22247 7.43213 8.08126 8.70209 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.003919 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.997124 B = 7142.803365 C = 8448.638625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.474 5.474 3 C 0.123 3.877 4 C -0.187 4.187 5 C 0.281 3.719 6 C -0.337 4.337 7 C 0.183 3.817 8 N -0.617 5.617 9 C 0.500 3.500 10 N -0.539 5.539 11 C -0.304 4.304 12 H 0.106 0.894 13 C -0.030 4.030 14 N -0.930 5.930 15 Si 1.009 2.991 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.266 1.266 19 N -0.618 5.618 20 C -0.108 4.108 21 C -0.092 4.092 22 C -0.155 4.155 23 C -0.104 4.104 24 C -0.123 4.123 25 C 0.073 3.927 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.219 0.781 30 H 0.171 0.829 31 H 0.190 0.810 32 H 0.398 0.602 33 H 0.277 0.723 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.036 -1.715 -0.039 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.155 5.155 3 C -0.009 4.009 4 C -0.195 4.195 5 C 0.132 3.868 6 C -0.366 4.366 7 C 0.015 3.985 8 N -0.345 5.345 9 C 0.144 3.856 10 N -0.153 5.153 11 C -0.435 4.435 12 H 0.124 0.876 13 C -0.229 4.229 14 N -0.570 5.570 15 Si 0.831 3.169 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.191 1.191 19 N -0.345 5.345 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.174 4.174 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.032 4.032 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.236 0.764 30 H 0.188 0.812 31 H 0.206 0.794 32 H 0.233 0.767 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.963 -2.176 -0.040 23.066 hybrid contribution 0.780 0.146 0.017 0.794 sum -22.182 -2.030 -0.023 22.275 Atomic orbital electron populations 1.22378 0.73488 1.06374 1.04730 1.43947 1.07774 1.03035 1.60732 1.22318 0.87989 0.92968 0.97600 1.18753 0.91584 0.90768 1.18386 1.19424 0.88545 0.91548 0.87310 1.22226 1.01844 0.92894 1.19654 1.23268 0.86318 1.01428 0.87528 1.67884 1.28457 1.11604 1.26520 1.19391 0.86442 0.85927 0.93830 1.40482 1.00498 1.08522 1.65826 1.20011 0.83798 0.92019 1.47624 0.87640 1.26323 1.01687 0.98024 0.96883 1.69800 1.24778 1.12093 1.50333 0.84749 0.75612 0.77199 0.79319 1.19076 1.20117 1.19080 1.67808 0.99219 1.39946 1.27567 1.19288 0.93357 0.92962 1.05624 1.20508 0.98326 0.93363 0.98937 1.20940 0.98190 0.94652 1.03631 1.21154 0.91124 1.00562 0.99443 1.20369 1.00991 0.87979 1.04926 1.18502 0.89193 0.89767 1.05703 0.89654 0.87093 0.88660 0.76430 0.81195 0.79359 0.76700 0.91407 0.88542 0.85357 0.82502 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.00 127.77 1.41 1.95 16 2 N -0.47 -9.38 3.16 -538.55 -1.70 -11.08 16 3 C 0.12 2.78 10.73 83.46 0.90 3.67 16 4 C -0.19 -6.44 6.27 -18.92 -0.12 -6.56 16 5 C 0.28 11.56 6.79 41.93 0.28 11.84 16 6 C -0.34 -11.39 9.68 22.70 0.22 -11.17 16 7 C 0.18 6.87 11.28 84.59 0.95 7.82 16 8 N -0.62 -30.65 9.09 -198.18 -1.80 -32.45 16 9 C 0.50 27.13 8.38 261.47 2.19 29.32 16 10 N -0.54 -31.59 5.43 -194.40 -1.06 -32.65 16 11 C -0.30 -17.84 9.69 84.03 0.81 -17.03 16 12 H 0.11 6.16 7.04 -2.91 -0.02 6.14 16 13 C -0.03 -1.69 5.50 84.88 0.47 -1.22 16 14 N -0.93 -54.48 13.05 21.65 0.28 -54.20 16 15 Si 1.01 44.17 29.55 68.60 2.03 46.20 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 N -0.62 -31.12 9.28 -187.01 -1.74 -32.86 16 20 C -0.11 -3.88 6.27 -20.09 -0.13 -4.00 16 21 C -0.09 -3.55 9.79 22.19 0.22 -3.33 16 22 C -0.16 -4.70 9.98 22.04 0.22 -4.48 16 23 C -0.10 -2.39 10.01 22.29 0.22 -2.16 16 24 C -0.12 -2.64 9.94 22.38 0.22 -2.42 16 25 C 0.07 1.96 6.79 38.97 0.26 2.23 16 26 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.11 0.33 8.13 -2.39 -0.02 0.31 16 28 H 0.09 0.53 8.07 -2.38 -0.02 0.51 16 29 H 0.22 2.74 7.30 -2.91 -0.02 2.72 16 30 H 0.17 3.79 7.12 -2.91 -0.02 3.77 16 31 H 0.19 5.17 8.06 -2.91 -0.02 5.15 16 32 H 0.40 24.16 8.01 -92.71 -0.74 23.42 16 33 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.10 4.38 7.25 -2.91 -0.02 4.36 16 35 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.16 2.04 8.04 -2.91 -0.02 2.01 16 Total: -1.00 -80.04 324.59 4.52 -75.52 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.37 Total: 37.06 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 8.14 Total: 4.47 kcal Atomic # 7 Polarization: -157.24 SS G_CDS: -6.01 Total: -163.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -80.04 4.52 -75.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.850 kcal (2) G-P(sol) polarization free energy of solvation -80.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds