Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 C 1.53120 * 109.52277 * 184.99789 * 3 2 1 5 5 C 1.53040 * 109.27778 * 182.44489 * 4 3 2 6 6 N 1.46844 * 109.52377 * 59.17865 * 5 4 3 7 7 C 1.38406 * 111.00157 * 174.16008 * 6 5 4 8 8 N 1.32751 * 119.43511 * 36.31508 * 7 6 5 9 9 C 1.31472 * 121.73839 * 179.97438 * 8 7 6 10 10 C 1.40786 * 120.39228 * 0.02562 * 9 8 7 11 11 C 1.41187 * 120.56509 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00471 * 329.13687 * 11 10 9 13 13 C 1.39867 * 120.00346 * 149.14352 * 11 10 9 14 14 N 1.30910 * 119.99580 * 348.17510 * 13 11 10 15 15 Si 1.86797 * 120.00336 * 168.17188 * 13 11 10 16 16 H 1.48500 * 109.47090 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46759 * 119.99927 * 15 13 11 18 18 H 1.48494 * 109.47266 * 239.99801 * 15 13 11 19 19 C 1.41282 * 118.86955 * 0.02562 * 10 9 8 20 20 C 1.36677 * 118.40166 * 359.97438 * 19 10 9 21 21 Cl 1.73597 * 120.26205 * 180.27197 * 20 19 10 22 22 C 1.46849 * 111.20095 * 298.26033 * 6 5 4 23 23 C 1.53036 * 109.52119 * 61.73902 * 22 6 5 24 24 H 1.09001 * 109.47372 * 299.99964 * 1 2 3 25 25 H 1.09008 * 109.47179 * 59.99235 * 1 2 3 26 26 H 1.08994 * 109.47652 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47068 * 240.00480 * 2 1 3 28 28 H 1.08999 * 109.47092 * 120.00719 * 2 1 3 29 29 H 1.08998 * 109.57509 * 305.16333 * 3 2 1 30 30 H 1.09002 * 109.50067 * 62.50856 * 4 3 2 31 31 H 1.08999 * 109.50779 * 302.38575 * 4 3 2 32 32 H 1.09000 * 109.46132 * 299.16460 * 5 4 3 33 33 H 1.08997 * 109.46238 * 179.19876 * 5 4 3 34 34 H 1.07998 * 119.79785 * 179.97438 * 9 8 7 35 35 H 0.96996 * 119.99764 * 180.02562 * 14 13 11 36 36 H 1.07999 * 120.80051 * 180.02562 * 19 10 9 37 37 H 1.08998 * 109.45946 * 181.75319 * 22 6 5 38 38 H 1.08994 * 109.45757 * 301.72642 * 22 6 5 39 39 H 1.08998 * 109.49917 * 180.87813 * 23 22 6 40 40 H 1.09001 * 109.50257 * 60.76439 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4456 -0.1257 5 6 4.0752 2.8875 -0.0638 6 7 3.6697 3.4969 1.2092 7 6 4.2239 4.7567 1.3549 8 7 4.3571 5.5379 0.2898 9 6 4.8767 6.7425 0.3763 10 6 5.3125 7.2428 1.6181 11 6 5.8706 8.5360 1.7152 12 1 6.4195 8.9512 0.8830 13 6 5.7128 9.2794 2.8894 14 7 4.8637 8.8853 3.8045 15 14 6.7137 10.8346 3.1519 16 1 7.5941 11.0608 1.9775 17 1 5.7971 11.9919 3.3129 18 1 7.5451 10.6879 4.3735 19 6 5.1817 6.4287 2.7653 20 6 4.6348 5.1845 2.6207 21 17 4.4449 4.1466 3.9992 22 6 2.2072 3.5479 1.3316 23 6 1.6424 2.1257 1.3114 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6042 1.9839 -0.8396 30 1 3.8537 0.9987 -1.0774 31 1 3.9999 0.8711 0.6927 32 1 3.6518 3.4579 -0.8906 33 1 5.1625 2.8923 -0.1388 34 1 4.9707 7.3514 -0.5107 35 1 4.7540 9.4011 4.6186 36 1 5.5053 6.7813 3.7335 37 1 1.9381 4.0322 2.2703 38 1 1.7927 4.1152 0.4984 39 1 0.5558 2.1647 1.3865 40 1 2.0460 1.5619 2.1524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164456909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -9.582382 kcal Electronic energy + Delta-G solvation = -21499.926490 eV Core-core repulsion = 18338.493687 eV Total energy + Delta-G solvation = -3161.432803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15655 -39.42943 -37.17423 -36.58072 -35.36523 -32.54317 -32.24529 -31.65447 -30.44761 -27.24710 -25.54119 -24.17865 -23.74885 -22.89235 -21.77317 -20.51701 -19.39987 -18.21157 -17.42350 -16.89972 -16.07387 -15.97486 -15.59247 -15.48602 -15.03297 -14.82268 -14.40778 -14.29937 -14.02696 -13.81209 -13.64388 -13.30027 -13.11529 -12.93474 -12.73095 -12.62244 -12.51942 -12.43363 -12.07173 -11.95208 -11.89450 -11.63914 -11.42052 -11.25985 -11.05426 -11.02160 -10.38649 -10.04811 -9.68407 -9.07641 -8.73430 -6.50304 0.51438 0.82682 1.40484 1.45749 1.50061 1.55859 2.17350 2.59769 2.97615 3.46472 3.84667 3.89644 3.91048 4.09199 4.35639 4.42664 4.45195 4.56511 4.59359 4.64528 4.66838 4.72616 4.78740 4.88066 4.98722 4.99776 5.05954 5.11453 5.15712 5.19497 5.23231 5.24521 5.32495 5.37542 5.51891 5.63574 5.71412 5.76781 6.18735 6.24064 6.50248 6.69106 6.74880 7.46064 8.22037 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.003880 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.683597 B = 7214.436694 C = 7616.307838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.084 4.084 4 C -0.102 4.102 5 C 0.072 3.928 6 N -0.462 5.462 7 C 0.155 3.845 8 N -0.483 5.483 9 C -0.016 4.016 10 C 0.050 3.950 11 C -0.471 4.471 12 H 0.093 0.907 13 C 0.034 3.966 14 N -0.821 5.821 15 Si 0.990 3.010 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.136 4.136 20 C -0.032 4.032 21 Cl -0.075 7.075 22 C 0.066 3.934 23 C -0.099 4.099 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.052 0.948 34 H 0.146 0.854 35 H 0.293 0.707 36 H 0.122 0.878 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -10.638 -3.084 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.103 4.103 4 C -0.140 4.140 5 C -0.055 4.055 6 N -0.184 5.184 7 C -0.074 4.074 8 N -0.195 5.195 9 C -0.179 4.179 10 C 0.045 3.955 11 C -0.501 4.501 12 H 0.111 0.889 13 C -0.183 4.183 14 N -0.447 5.447 15 Si 0.811 3.189 16 H -0.176 1.176 17 H -0.191 1.191 18 H -0.190 1.190 19 C -0.163 4.163 20 C -0.063 4.063 21 Cl -0.047 7.047 22 C -0.061 4.061 23 C -0.137 4.137 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.668 -11.315 -3.158 12.641 hybrid contribution 0.396 1.824 0.645 1.975 sum -4.272 -9.491 -2.513 10.707 Atomic orbital electron populations 1.21813 0.95449 1.01946 1.01815 1.21488 0.96197 0.94717 1.02399 1.21202 0.95005 0.96994 0.97095 1.21639 0.95646 0.94144 1.02571 1.21870 0.99168 0.95458 0.89036 1.59596 1.09182 1.14921 1.34700 1.18966 1.08148 0.92401 0.87909 1.67265 1.14129 1.05866 1.32206 1.22732 1.04557 0.92849 0.97771 1.18741 0.90986 0.94326 0.91471 1.19814 1.30246 0.98831 1.01176 0.88859 1.26859 0.94336 1.03035 0.94021 1.69846 1.27462 1.39389 1.07957 0.85015 0.78430 0.75950 0.79551 1.17620 1.19142 1.19031 1.21255 1.03300 0.91131 1.00594 1.21253 1.04158 0.92847 0.88010 1.98247 1.96323 1.67605 1.42501 1.22083 0.86233 0.98506 0.99327 1.21627 1.00363 0.93173 0.98488 0.92690 0.92957 0.91936 0.91244 0.91733 0.92042 0.89974 0.91289 0.95257 0.92987 0.83689 0.89615 0.86059 0.92820 0.96468 0.90061 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.67 71.98 0.70 -1.71 16 2 C -0.11 -1.93 5.40 30.59 0.17 -1.77 16 3 C -0.08 -1.92 2.25 -10.71 -0.02 -1.94 16 4 C -0.10 -2.58 5.38 30.65 0.16 -2.41 16 5 C 0.07 2.47 4.91 86.33 0.42 2.89 16 6 N -0.46 -17.80 3.99 -701.62 -2.80 -20.59 16 7 C 0.16 7.15 5.56 133.32 0.74 7.89 16 8 N -0.48 -23.13 9.19 -191.09 -1.76 -24.89 16 9 C -0.02 -0.81 10.97 85.37 0.94 0.13 16 10 C 0.05 2.56 5.52 -21.18 -0.12 2.45 16 11 C -0.47 -23.49 9.06 23.39 0.21 -23.28 16 12 H 0.09 4.37 7.87 -2.91 -0.02 4.35 16 13 C 0.03 1.58 5.24 85.22 0.45 2.02 16 14 N -0.82 -40.72 11.08 21.82 0.24 -40.47 16 15 Si 0.99 35.59 29.58 68.60 2.03 37.62 16 16 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 17 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 18 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 19 C -0.14 -6.99 8.47 22.65 0.19 -6.80 16 20 C -0.03 -1.53 6.32 22.28 0.14 -1.39 16 21 Cl -0.08 -3.09 28.43 -2.72 -0.08 -3.16 16 22 C 0.07 2.28 5.39 86.32 0.47 2.75 16 23 C -0.10 -2.55 5.08 30.65 0.16 -2.39 16 24 H 0.05 0.89 6.64 -2.39 -0.02 0.87 16 25 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.08 7.78 -2.39 -0.02 1.06 16 33 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.15 6.50 8.06 -2.91 -0.02 6.47 16 35 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 36 H 0.12 6.47 6.52 -2.91 -0.02 6.45 16 37 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 1.81 6.71 -2.39 -0.02 1.80 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -55.21 334.16 3.26 -51.95 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.02 Total: 23.11 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.60 Total: -23.56 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -4.31 Total: -85.96 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.08 Total: -3.16 kcal Total: -55.21 3.26 -51.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164456909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.371 kcal (2) G-P(sol) polarization free energy of solvation -55.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds