Wall clock time and date at job start Tue Mar 31 2020 07:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99895 * 2 1 4 4 C 1.50699 * 109.47036 * 269.99575 * 3 2 1 5 5 C 1.38369 * 119.84959 * 269.72624 * 4 3 2 6 6 C 1.37945 * 120.14866 * 179.76313 * 5 4 3 7 7 C 1.39631 * 119.84992 * 0.53366 * 6 5 4 8 8 C 1.43200 * 120.15040 * 179.69745 * 7 6 5 9 9 N 7.46236 * 104.55468 * 296.71897 * 2 1 3 10 10 C 1.39633 * 119.69444 * 359.72415 * 7 6 5 11 11 C 1.37948 * 119.85154 * 359.97438 * 10 7 6 12 12 C 1.38829 * 119.99984 * 179.97438 * 2 1 3 13 13 C 1.39959 * 119.96920 * 5.00470 * 12 2 1 14 14 N 1.32133 * 120.31539 * 180.02562 * 13 12 2 15 15 C 1.31925 * 120.27551 * 0.02562 * 14 13 12 16 16 C 1.40684 * 119.93255 * 359.97438 * 15 14 13 17 17 C 1.41270 * 120.15546 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00530 * 7.35170 * 17 16 15 19 19 C 1.40063 * 119.99736 * 187.34800 * 17 16 15 20 20 N 1.30733 * 120.00234 * 7.58457 * 19 17 16 21 21 Si 1.86802 * 119.99722 * 187.58168 * 19 17 16 22 22 H 1.48493 * 109.47222 * 90.00034 * 21 19 17 23 23 H 1.48505 * 109.46732 * 210.00092 * 21 19 17 24 24 H 1.48503 * 109.46967 * 329.99921 * 21 19 17 25 25 N 1.32244 * 119.97011 * 185.02429 * 12 2 1 26 26 H 1.08997 * 109.47551 * 270.00248 * 1 2 3 27 27 H 1.09000 * 109.47179 * 30.00100 * 1 2 3 28 28 H 1.09002 * 109.46942 * 150.00269 * 1 2 3 29 29 H 1.08993 * 109.47028 * 30.00088 * 3 2 1 30 30 H 1.09002 * 109.47049 * 150.00151 * 3 2 1 31 31 H 1.08001 * 119.91910 * 0.02562 * 5 4 3 32 32 H 1.08005 * 120.07369 * 180.25411 * 6 5 4 33 33 H 1.08001 * 120.07305 * 179.97438 * 10 7 6 34 34 H 1.07997 * 119.92603 * 180.02562 * 11 10 7 35 35 H 1.08005 * 119.84265 * 0.04388 * 13 12 2 36 36 H 1.07997 * 120.03734 * 179.97438 * 15 14 13 37 37 H 0.96994 * 120.00110 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6055 1.3072 -2.0681 6 6 3.8394 1.6977 -3.3703 7 6 2.9110 2.5042 -4.0314 8 6 3.1504 2.9187 -5.3810 9 7 3.3403 3.2475 -6.4516 10 6 1.7482 2.9051 -3.3703 11 6 1.5239 2.5022 -2.0702 12 6 2.1591 -1.2023 0.0005 13 6 1.4626 -2.4117 -0.1047 14 7 2.1164 -3.5600 -0.1044 15 6 3.4317 -3.5765 -0.0043 16 6 4.1428 -2.3673 0.1020 17 6 5.5514 -2.3794 0.2089 18 1 6.0941 -3.3056 0.0902 19 6 6.2443 -1.1902 0.4687 20 7 5.5847 -0.0994 0.7589 21 14 8.1109 -1.1628 0.4006 22 1 8.5510 -0.8268 -0.9772 23 1 8.6258 -0.1415 1.3477 24 1 8.6396 -2.4985 0.7772 25 7 3.4777 -1.2038 0.1009 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1384 0.5138 31 1 4.3249 0.6870 -1.5540 32 1 4.7409 1.3840 -3.8758 33 1 1.0261 3.5293 -3.8757 34 1 0.6248 2.8112 -1.5579 35 1 0.3857 -2.4064 -0.1869 36 1 3.9621 -4.5173 -0.0040 37 1 6.0645 0.7242 0.9385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166540483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:01 Heat of formation + Delta-G solvation = 108.616497 kcal Electronic energy + Delta-G solvation = -22607.095618 eV Core-core repulsion = 19349.680809 eV Total energy + Delta-G solvation = -3257.414809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55785 -38.86822 -36.66475 -35.78263 -34.02379 -31.94770 -31.64637 -30.90033 -29.48686 -27.56701 -25.82736 -24.83164 -22.66012 -22.53069 -21.70702 -20.27478 -18.74619 -17.64444 -16.44152 -15.71172 -15.54816 -15.18677 -15.00449 -14.82352 -14.44053 -14.15015 -13.89149 -13.49634 -13.34961 -13.20811 -12.78086 -12.70916 -12.55713 -12.11920 -11.89485 -11.61045 -11.45909 -11.38404 -11.29562 -11.04657 -10.75128 -10.72898 -10.39810 -9.85902 -9.58458 -9.41538 -8.84914 -8.64984 -8.38996 -7.43212 -6.69986 -6.58373 -4.71445 0.88465 1.53383 2.62497 2.68565 2.99591 3.00719 3.02685 3.05819 3.21176 3.75431 3.81065 3.96122 4.15674 4.62360 4.93839 4.98779 5.16878 5.44987 5.47555 5.57157 5.70627 5.78943 5.86379 5.89898 5.99321 6.15378 6.17299 6.29454 6.32970 6.36911 6.53007 6.58854 6.76258 6.89757 6.95346 7.07033 7.15007 7.50180 7.55333 7.70516 8.03286 8.15132 8.49214 8.75379 9.35155 9.89541 10.08315 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.011407 B = 0.006158 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.086344 B = 4545.719083 C = 6037.211668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.611 5.611 3 C 0.160 3.840 4 C -0.057 4.057 5 C -0.087 4.087 6 C -0.076 4.076 7 C -0.045 4.045 8 C 0.265 3.735 9 N -0.436 5.436 10 C -0.080 4.080 11 C -0.118 4.118 12 C 0.373 3.627 13 C -0.166 4.166 14 N -0.407 5.407 15 C -0.107 4.107 16 C 0.249 3.751 17 C -0.417 4.417 18 H 0.089 0.911 19 C 0.077 3.923 20 N -0.717 5.717 21 Si 0.906 3.094 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.261 1.261 25 N -0.505 5.505 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 7.361 -0.600 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.328 5.328 3 C 0.037 3.963 4 C -0.060 4.060 5 C -0.106 4.106 6 C -0.096 4.096 7 C -0.049 4.049 8 C -0.050 4.050 9 N -0.112 5.112 10 C -0.101 4.101 11 C -0.137 4.137 12 C 0.132 3.868 13 C -0.327 4.327 14 N -0.119 5.119 15 C -0.276 4.276 16 C 0.121 3.879 17 C -0.449 4.449 18 H 0.107 0.893 19 C -0.149 4.149 20 N -0.338 5.338 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.185 1.185 25 N -0.231 5.231 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.175 0.825 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.357 8.188 -2.170 9.525 hybrid contribution 0.676 -0.040 0.275 0.731 sum -3.680 8.147 -1.895 9.139 Atomic orbital electron populations 1.21493 0.80166 1.01908 1.00369 1.45909 1.03660 1.02320 1.80921 1.20350 1.00098 0.84899 0.90984 1.20873 0.93211 0.93759 0.98177 1.21599 0.97983 0.97548 0.93427 1.21262 0.97978 0.95407 0.94996 1.16007 0.98209 1.03940 0.86746 1.25867 0.93215 0.93087 0.92848 1.81201 1.08410 1.09687 1.11895 1.21000 0.95284 0.99017 0.94761 1.20990 0.99408 0.99067 0.94251 1.19433 0.91515 0.85157 0.90707 1.21999 0.98555 0.87976 1.24188 1.67531 1.09960 1.28519 1.05854 1.22925 0.89986 0.98139 1.16596 1.19051 0.94115 0.86750 0.87938 1.19591 0.90104 0.95267 1.39975 0.89304 1.26015 1.00689 0.95186 0.93052 1.69976 1.37288 1.00130 1.26433 0.86340 0.82159 0.79420 0.79098 1.19252 1.20112 1.18456 1.68882 1.02788 1.27788 1.23606 0.94097 0.92424 0.91475 0.91635 0.86333 0.82459 0.85514 0.85692 0.85604 0.86053 0.85375 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 10.29 59.84 0.62 2.02 16 2 N -0.61 -10.66 2.97 -182.94 -0.54 -11.20 16 3 C 0.16 2.52 5.59 -5.19 -0.03 2.50 16 4 C -0.06 -0.85 5.47 -104.53 -0.57 -1.42 16 5 C -0.09 -1.42 9.68 -39.64 -0.38 -1.80 16 6 C -0.08 -1.10 9.76 -39.17 -0.38 -1.48 16 7 C -0.05 -0.60 5.73 -106.93 -0.61 -1.22 16 8 C 0.26 3.76 15.33 -22.48 -0.34 3.41 16 9 N -0.44 -6.93 18.54 41.83 0.78 -6.15 16 10 C -0.08 -0.93 9.76 -39.17 -0.38 -1.31 16 11 C -0.12 -1.41 9.68 -39.64 -0.38 -1.80 16 12 C 0.37 8.20 7.37 -155.01 -1.14 7.06 16 13 C -0.17 -3.74 10.44 -16.78 -0.18 -3.92 16 14 N -0.41 -9.92 10.47 -12.11 -0.13 -10.05 16 15 C -0.11 -2.61 10.97 -16.59 -0.18 -2.79 16 16 C 0.25 6.24 6.51 -84.84 -0.55 5.69 16 17 C -0.42 -9.95 9.15 -37.75 -0.35 -10.29 16 18 H 0.09 2.00 7.86 -52.49 -0.41 1.59 16 19 C 0.08 1.69 5.47 -17.34 -0.09 1.60 16 20 N -0.72 -15.94 11.56 55.55 0.64 -15.30 16 21 Si 0.91 16.67 29.57 -169.99 -5.03 11.64 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 N -0.50 -12.02 6.48 -10.14 -0.07 -12.09 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.07 0.92 5.98 -51.93 -0.31 0.61 16 29 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 30 H 0.12 2.23 7.22 -51.93 -0.37 1.85 16 31 H 0.16 3.05 7.63 -52.49 -0.40 2.65 16 32 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 2.43 6.02 -52.48 -0.32 2.11 16 36 H 0.13 2.90 8.06 -52.49 -0.42 2.47 16 37 H 0.28 5.57 8.29 -40.82 -0.34 5.23 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -27.29 331.54 -8.21 -35.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.90 Total: 6.42 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.97 Total: -3.76 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.68 Total: -54.80 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.29 -8.21 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166540483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.117 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds