Wall clock time and date at job start Tue Mar 31 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50578 * 2 1 4 4 C 1.53121 * 109.50088 * 239.92625 * 2 1 3 5 5 C 1.53123 * 109.16010 * 182.36680 * 4 2 1 6 6 C 1.53035 * 109.27945 * 57.65172 * 5 4 2 7 7 N 1.46847 * 109.52426 * 300.82163 * 6 5 4 8 8 C 1.38407 * 111.00075 * 185.83781 * 7 6 5 9 9 N 1.32743 * 119.43871 * 295.26720 * 8 7 6 10 10 C 1.31475 * 121.74061 * 179.97438 * 9 8 7 11 11 C 1.40788 * 120.38650 * 0.28355 * 10 9 8 12 12 C 1.41201 * 120.56017 * 179.72758 * 11 10 9 13 13 H 1.07990 * 120.00392 * 21.34647 * 12 11 10 14 14 C 1.39871 * 119.99550 * 201.34859 * 12 11 10 15 15 N 1.30903 * 120.00059 * 18.71956 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 198.71291 * 14 12 11 17 17 H 1.48507 * 109.46965 * 59.99965 * 16 14 12 18 18 H 1.48494 * 109.47397 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47265 * 300.00341 * 16 14 12 20 20 C 1.41286 * 118.87230 * 359.47588 * 11 10 9 21 21 C 1.36663 * 118.39740 * 0.50899 * 20 11 10 22 22 Cl 1.73609 * 120.26211 * 179.70755 * 21 20 11 23 23 C 1.46849 * 111.19666 * 61.74037 * 7 6 5 24 24 H 1.09000 * 109.46038 * 58.27796 * 23 7 6 25 25 C 1.53008 * 109.46321 * 178.24243 * 23 7 6 26 26 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47021 * 300.07798 * 1 2 3 28 28 H 1.09002 * 109.47420 * 60.07247 * 1 2 3 29 29 H 1.08994 * 109.52750 * 62.45831 * 4 2 1 30 30 H 1.09000 * 109.52173 * 302.26561 * 4 2 1 31 31 H 1.08996 * 109.49865 * 297.71212 * 5 4 2 32 32 H 1.09000 * 109.53276 * 177.61451 * 5 4 2 33 33 H 1.09003 * 109.46272 * 180.80832 * 6 5 4 34 34 H 1.09000 * 109.46690 * 60.83597 * 6 5 4 35 35 H 1.07997 * 119.80729 * 180.02562 * 10 9 8 36 36 H 0.97000 * 119.99969 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.79958 * 180.26898 * 20 11 10 38 38 H 1.08994 * 109.46869 * 63.88932 * 25 23 7 39 39 H 1.08997 * 109.47027 * 183.89760 * 25 23 7 40 40 H 1.09001 * 109.46868 * 303.89332 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7233 -1.2491 5 6 3.5712 -0.7706 -1.2116 6 6 4.0238 -1.4716 0.0712 7 7 3.5101 -0.7412 1.2370 8 6 4.0082 -1.2724 2.4141 9 7 3.6813 -2.5114 2.7606 10 6 4.1288 -3.0608 3.8680 11 6 4.9739 -2.3373 4.7309 12 6 5.4521 -2.9218 5.9240 13 1 5.4738 -3.9965 6.0279 14 6 5.8974 -2.1088 6.9713 15 7 5.5469 -0.8483 7.0161 16 14 6.9924 -2.8216 8.3063 17 1 8.2438 -3.3387 7.6964 18 1 7.3240 -1.7622 9.2926 19 1 6.2804 -3.9306 8.9908 20 6 5.3397 -1.0185 4.3800 21 6 4.8471 -0.4948 3.2178 22 17 5.2592 1.1237 2.7437 23 6 2.0418 -0.7234 1.2477 24 1 1.6662 -1.7466 1.2540 25 6 1.5499 0.0078 2.4985 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3634 0.5127 -0.8906 29 1 1.7150 -0.1866 -2.1399 30 1 1.6457 -1.7389 -1.2693 31 1 3.9671 0.2447 -1.2306 32 1 3.9400 -1.3214 -2.0769 33 1 5.1129 -1.4942 0.1079 34 1 3.6389 -2.4914 0.0832 35 1 3.8432 -4.0715 4.1193 36 1 5.8560 -0.2844 7.7422 37 1 5.9898 -0.4370 5.0169 38 1 1.8677 1.0496 2.4589 39 1 0.4618 -0.0389 2.5423 40 1 1.9698 -0.4668 3.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166616167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:04 Heat of formation + Delta-G solvation = 6.457406 kcal Electronic energy + Delta-G solvation = -22117.103569 eV Core-core repulsion = 18956.366303 eV Total energy + Delta-G solvation = -3160.737266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71286 -37.84045 -35.33941 -34.61690 -33.27305 -32.58087 -30.53250 -29.46673 -27.81157 -25.86276 -25.16874 -22.97619 -21.77813 -20.94539 -20.59805 -19.09350 -17.59710 -16.21595 -15.66065 -15.20085 -14.99821 -14.28657 -14.23274 -14.17030 -13.52986 -13.31087 -12.79653 -12.66620 -12.30681 -12.03343 -11.92150 -11.76814 -11.56923 -11.43586 -11.31724 -11.31313 -11.28111 -10.87349 -10.71093 -10.49502 -10.43694 -10.33713 -9.94681 -9.89107 -9.72581 -9.46804 -8.49991 -8.20714 -7.68392 -7.54214 -7.01915 -4.64406 2.37325 2.74736 2.93662 2.95060 3.03871 3.37846 3.72301 4.33917 4.47536 5.01704 5.09460 5.17480 5.36146 5.47750 5.69721 5.74323 5.79001 5.84139 5.88047 5.99718 6.08889 6.10715 6.17071 6.20356 6.29591 6.35148 6.40432 6.45878 6.56651 6.58885 6.68495 6.77914 6.84449 6.87091 6.95212 7.09054 7.55402 7.72560 7.76650 8.08791 8.31884 8.46892 8.59903 9.38045 9.85717 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.004632 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.000966 B = 6043.486252 C = 6237.068772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.067 3.933 7 N -0.457 5.457 8 C 0.144 3.856 9 N -0.471 5.471 10 C -0.016 4.016 11 C 0.072 3.928 12 C -0.437 4.437 13 H 0.088 0.912 14 C 0.073 3.927 15 N -0.775 5.775 16 Si 0.915 3.085 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.262 1.262 20 C -0.140 4.140 21 C -0.007 4.007 22 Cl -0.099 7.099 23 C 0.100 3.900 24 H 0.044 0.956 25 C -0.139 4.139 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.129 0.871 36 H 0.288 0.712 37 H 0.140 0.860 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 1.853 -7.829 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.061 4.061 7 N -0.180 5.180 8 C -0.084 4.084 9 N -0.181 5.181 10 C -0.181 4.181 11 C 0.067 3.933 12 C -0.466 4.466 13 H 0.106 0.894 14 C -0.148 4.148 15 N -0.398 5.398 16 Si 0.739 3.261 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.186 1.186 20 C -0.167 4.167 21 C -0.037 4.037 22 Cl -0.071 7.071 23 C -0.008 4.008 24 H 0.062 0.938 25 C -0.197 4.197 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.889 2.255 -8.317 9.454 hybrid contribution 0.803 -0.467 1.346 1.635 sum -3.086 1.787 -6.972 7.831 Atomic orbital electron populations 1.21849 0.95567 1.01511 1.01372 1.21207 0.94642 1.00211 0.94319 0.90661 1.21616 0.95869 1.00191 0.97360 1.21588 0.95565 1.01369 0.96793 1.21958 0.99441 0.95204 0.89459 1.59563 1.07212 1.51400 0.99809 1.18373 1.05187 0.89687 0.95157 1.67159 1.22121 1.10876 1.17942 1.22315 1.01856 1.00361 0.93526 1.18453 0.89892 0.91469 0.93441 1.19553 1.34665 0.95100 0.97234 0.89442 1.26055 0.94655 0.94558 0.99508 1.69809 1.33074 1.06701 1.30254 0.86228 0.80793 0.79712 0.79379 1.18486 1.20025 1.18647 1.21388 1.02933 0.97523 0.94818 1.21146 1.00897 0.85330 0.96355 1.98254 1.92734 1.23657 1.92453 1.21478 0.87378 0.97724 0.94208 0.93828 1.21791 0.99288 1.00794 0.97803 0.93024 0.92370 0.93083 0.92463 0.92515 0.91389 0.92217 0.91641 0.94573 0.85306 0.90047 0.84278 0.92481 0.93123 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.86 37.16 0.33 -1.41 16 2 C -0.08 -1.20 2.40 -90.54 -0.22 -1.42 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.11 -1.46 5.29 -26.60 -0.14 -1.60 16 5 C -0.12 -1.60 6.09 -26.65 -0.16 -1.76 16 6 C 0.07 1.17 5.28 -3.83 -0.02 1.15 16 7 N -0.46 -8.80 3.84 -165.55 -0.64 -9.44 16 8 C 0.14 3.22 3.56 -155.06 -0.55 2.67 16 9 N -0.47 -10.97 9.66 -11.75 -0.11 -11.09 16 10 C -0.02 -0.39 10.97 -16.74 -0.18 -0.57 16 11 C 0.07 1.81 5.61 -106.65 -0.60 1.21 16 12 C -0.44 -10.58 9.07 -37.85 -0.34 -10.92 16 13 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 14 C 0.07 1.68 5.17 -17.34 -0.09 1.59 16 15 N -0.78 -18.56 10.85 55.54 0.60 -17.96 16 16 Si 0.92 17.16 29.60 -169.99 -5.03 12.13 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 C -0.14 -3.48 8.54 -38.99 -0.33 -3.81 16 21 C -0.01 -0.16 6.32 -39.57 -0.25 -0.41 16 22 Cl -0.10 -2.05 28.43 -51.86 -1.47 -3.52 16 23 C 0.10 1.75 1.75 -67.72 -0.12 1.63 16 24 H 0.04 0.84 7.97 -51.93 -0.41 0.43 16 25 C -0.14 -2.50 8.60 37.16 0.32 -2.18 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.20 8.10 -51.93 -0.42 0.77 16 34 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 35 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 36 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 37 H 0.14 3.56 6.08 -52.48 -0.32 3.24 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.78 6.67 -51.93 -0.35 0.44 16 40 H 0.06 1.26 6.93 -51.93 -0.36 0.90 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -25.04 330.97 -10.00 -35.04 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.97 Total: 5.70 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.36 Total: -15.85 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.15 Total: -38.48 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.47 Total: -3.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -25.04 -10.00 -35.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166616167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.496 kcal (2) G-P(sol) polarization free energy of solvation -25.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds