Wall clock time and date at job start Tue Mar 31 2020 07:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50578 * 2 1 4 4 C 1.53121 * 109.50088 * 239.92625 * 2 1 3 5 5 C 1.53123 * 109.16010 * 182.36680 * 4 2 1 6 6 C 1.53035 * 109.27945 * 57.65172 * 5 4 2 7 7 N 1.46847 * 109.52426 * 300.82163 * 6 5 4 8 8 C 1.38407 * 111.00075 * 185.83781 * 7 6 5 9 9 N 1.32743 * 119.43871 * 295.26720 * 8 7 6 10 10 C 1.31475 * 121.74061 * 179.97438 * 9 8 7 11 11 C 1.40788 * 120.38650 * 0.28355 * 10 9 8 12 12 C 1.41201 * 120.56017 * 179.72758 * 11 10 9 13 13 H 1.07990 * 120.00392 * 21.34647 * 12 11 10 14 14 C 1.39871 * 119.99550 * 201.34859 * 12 11 10 15 15 N 1.30903 * 120.00059 * 18.71956 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 198.71291 * 14 12 11 17 17 H 1.48507 * 109.46965 * 59.99965 * 16 14 12 18 18 H 1.48494 * 109.47397 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47265 * 300.00341 * 16 14 12 20 20 C 1.41286 * 118.87230 * 359.47588 * 11 10 9 21 21 C 1.36663 * 118.39740 * 0.50899 * 20 11 10 22 22 Cl 1.73609 * 120.26211 * 179.70755 * 21 20 11 23 23 C 1.46849 * 111.19666 * 61.74037 * 7 6 5 24 24 H 1.09000 * 109.46038 * 58.27796 * 23 7 6 25 25 C 1.53008 * 109.46321 * 178.24243 * 23 7 6 26 26 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47021 * 300.07798 * 1 2 3 28 28 H 1.09002 * 109.47420 * 60.07247 * 1 2 3 29 29 H 1.08994 * 109.52750 * 62.45831 * 4 2 1 30 30 H 1.09000 * 109.52173 * 302.26561 * 4 2 1 31 31 H 1.08996 * 109.49865 * 297.71212 * 5 4 2 32 32 H 1.09000 * 109.53276 * 177.61451 * 5 4 2 33 33 H 1.09003 * 109.46272 * 180.80832 * 6 5 4 34 34 H 1.09000 * 109.46690 * 60.83597 * 6 5 4 35 35 H 1.07997 * 119.80729 * 180.02562 * 10 9 8 36 36 H 0.97000 * 119.99969 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.79958 * 180.26898 * 20 11 10 38 38 H 1.08994 * 109.46869 * 63.88932 * 25 23 7 39 39 H 1.08997 * 109.47027 * 183.89760 * 25 23 7 40 40 H 1.09001 * 109.46868 * 303.89332 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7233 -1.2491 5 6 3.5712 -0.7706 -1.2116 6 6 4.0238 -1.4716 0.0712 7 7 3.5101 -0.7412 1.2370 8 6 4.0082 -1.2724 2.4141 9 7 3.6813 -2.5114 2.7606 10 6 4.1288 -3.0608 3.8680 11 6 4.9739 -2.3373 4.7309 12 6 5.4521 -2.9218 5.9240 13 1 5.4738 -3.9965 6.0279 14 6 5.8974 -2.1088 6.9713 15 7 5.5469 -0.8483 7.0161 16 14 6.9924 -2.8216 8.3063 17 1 8.2438 -3.3387 7.6964 18 1 7.3240 -1.7622 9.2926 19 1 6.2804 -3.9306 8.9908 20 6 5.3397 -1.0185 4.3800 21 6 4.8471 -0.4948 3.2178 22 17 5.2592 1.1237 2.7437 23 6 2.0418 -0.7234 1.2477 24 1 1.6662 -1.7466 1.2540 25 6 1.5499 0.0078 2.4985 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3634 0.5127 -0.8906 29 1 1.7150 -0.1866 -2.1399 30 1 1.6457 -1.7389 -1.2693 31 1 3.9671 0.2447 -1.2306 32 1 3.9400 -1.3214 -2.0769 33 1 5.1129 -1.4942 0.1079 34 1 3.6389 -2.4914 0.0832 35 1 3.8432 -4.0715 4.1193 36 1 5.8560 -0.2844 7.7422 37 1 5.9898 -0.4370 5.0169 38 1 1.8677 1.0496 2.4589 39 1 0.4618 -0.0389 2.5423 40 1 1.9698 -0.4668 3.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166616167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:03 Heat of formation + Delta-G solvation = -4.938045 kcal Electronic energy + Delta-G solvation = -22117.597713 eV Core-core repulsion = 18956.366303 eV Total energy + Delta-G solvation = -3161.231410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28752 -39.42074 -37.10863 -36.27089 -34.75968 -33.88570 -32.37413 -31.19755 -29.16947 -27.27272 -26.68068 -24.59494 -23.53423 -22.22538 -22.17395 -20.40407 -19.41559 -17.85845 -17.37150 -16.82224 -16.56558 -15.96238 -15.50367 -15.44402 -14.90953 -14.79576 -14.33735 -14.20102 -13.70491 -13.59914 -13.52693 -13.23360 -13.03629 -12.90721 -12.83399 -12.64173 -12.55563 -12.48627 -12.37193 -12.01779 -11.74903 -11.59034 -11.49872 -11.26805 -11.10230 -11.04543 -10.28145 -10.05922 -9.39322 -9.26636 -8.77124 -6.49975 0.57328 0.88565 1.38837 1.49134 1.52985 1.56682 2.14868 2.57799 2.98447 3.51573 3.84688 3.91968 4.03741 4.15332 4.26586 4.41045 4.46848 4.59926 4.67002 4.69114 4.71008 4.78153 4.82906 4.93784 4.97979 5.00836 5.04553 5.08707 5.13745 5.15766 5.21018 5.27769 5.33170 5.37463 5.50675 5.62007 5.72214 5.84524 6.25375 6.30380 6.52116 6.64815 6.83931 7.52992 8.13705 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.004632 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.000966 B = 6043.486252 C = 6237.068772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.066 3.934 7 N -0.461 5.461 8 C 0.151 3.849 9 N -0.478 5.478 10 C -0.030 4.030 11 C 0.049 3.951 12 C -0.463 4.463 13 H 0.094 0.906 14 C 0.037 3.963 15 N -0.806 5.806 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.255 1.255 20 C -0.157 4.157 21 C -0.019 4.019 22 Cl -0.078 7.078 23 C 0.101 3.899 24 H 0.024 0.976 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.022 0.978 35 H 0.140 0.860 36 H 0.296 0.704 37 H 0.127 0.873 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 2.283 -8.999 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.061 4.061 7 N -0.183 5.183 8 C -0.078 4.078 9 N -0.189 5.189 10 C -0.194 4.194 11 C 0.044 3.956 12 C -0.492 4.492 13 H 0.112 0.888 14 C -0.182 4.182 15 N -0.430 5.430 16 Si 0.808 3.192 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.179 1.179 20 C -0.184 4.184 21 C -0.049 4.049 22 Cl -0.050 7.050 23 C -0.007 4.007 24 H 0.042 0.958 25 C -0.189 4.189 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.158 0.842 36 H 0.107 0.893 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.407 2.685 -9.503 10.814 hybrid contribution 0.920 -0.535 1.644 1.958 sum -3.487 2.150 -7.859 8.863 Atomic orbital electron populations 1.21817 0.93607 1.01879 1.02554 1.21187 0.96207 0.99539 0.92918 0.90819 1.21619 0.94832 1.00426 0.97770 1.21563 0.96508 1.01182 0.95243 1.22018 0.98600 0.94922 0.90583 1.59685 1.08421 1.51103 0.99136 1.18684 1.04108 0.89161 0.95827 1.67224 1.22270 1.11522 1.17891 1.22526 1.02055 1.00968 0.93811 1.18734 0.90593 0.91913 0.94336 1.19856 1.35840 0.95759 0.97708 0.88761 1.26914 0.95223 0.94631 1.01395 1.69856 1.33814 1.07974 1.31322 0.85133 0.78560 0.79106 0.76375 1.18285 1.19166 1.17858 1.21351 1.03672 0.97842 0.95498 1.21291 1.00922 0.86503 0.96167 1.98243 1.92566 1.21948 1.92210 1.21555 0.86061 0.97114 0.95947 0.95793 1.21732 1.00670 1.00203 0.96292 0.93054 0.92462 0.90692 0.89506 0.92609 0.91248 0.89866 0.93025 0.95997 0.84230 0.89293 0.85540 0.92493 0.90712 0.96392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.86 71.98 0.64 -2.32 16 2 C -0.08 -2.06 2.40 -10.74 -0.03 -2.09 16 3 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.11 -2.48 5.29 30.68 0.16 -2.31 16 5 C -0.11 -2.71 6.09 30.65 0.19 -2.53 16 6 C 0.07 2.28 5.28 86.32 0.46 2.73 16 7 N -0.46 -17.71 3.84 -677.69 -2.60 -20.31 16 8 C 0.15 6.91 3.56 133.32 0.47 7.38 16 9 N -0.48 -22.99 9.66 -191.09 -1.85 -24.84 16 10 C -0.03 -1.49 10.97 85.37 0.94 -0.55 16 11 C 0.05 2.55 5.61 -21.18 -0.12 2.43 16 12 C -0.46 -23.02 9.07 23.39 0.21 -22.81 16 13 H 0.09 4.38 7.91 -2.92 -0.02 4.36 16 14 C 0.04 1.70 5.17 85.23 0.44 2.14 16 15 N -0.81 -39.39 10.85 21.82 0.24 -39.15 16 16 Si 0.99 34.96 29.60 68.60 2.03 37.00 16 17 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 18 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 20 C -0.16 -8.10 8.54 22.65 0.19 -7.90 16 21 C -0.02 -0.88 6.32 22.28 0.14 -0.74 16 22 Cl -0.08 -3.24 28.43 -2.72 -0.08 -3.32 16 23 C 0.10 3.47 1.75 44.94 0.08 3.55 16 24 H 0.02 0.92 7.97 -2.39 -0.02 0.91 16 25 C -0.13 -4.71 8.60 71.98 0.62 -4.09 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.21 6.55 -2.39 -0.02 1.19 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 35 H 0.14 6.36 8.06 -2.91 -0.02 6.34 16 36 H 0.30 13.04 8.30 -92.71 -0.77 12.27 16 37 H 0.13 6.76 6.08 -2.91 -0.02 6.74 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.26 6.67 -2.39 -0.02 2.24 16 40 H 0.02 0.76 6.93 -2.39 -0.02 0.74 16 Total: -1.00 -55.51 330.97 3.16 -52.35 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.03 Total: 25.37 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.39 Total: -27.10 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -4.21 Total: -84.30 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.32 kcal Total: -55.51 3.16 -52.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166616167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.413 kcal (2) G-P(sol) polarization free energy of solvation -55.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds