Wall clock time and date at job start Tue Mar 31 2020 07:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.45074 * 2 1 4 4 C 1.53030 * 109.46429 * 240.02894 * 2 1 3 5 5 H 1.09000 * 109.50490 * 300.74043 * 4 2 1 6 6 C 1.53004 * 109.50537 * 60.82352 * 4 2 1 7 7 C 1.53120 * 109.27929 * 180.80228 * 4 2 1 8 8 C 1.53124 * 109.16008 * 57.65271 * 7 4 2 9 9 C 1.53033 * 109.27646 * 302.34697 * 8 7 4 10 10 N 1.46844 * 109.46354 * 119.96926 * 2 1 3 11 11 C 1.38405 * 111.00442 * 305.86376 * 10 2 1 12 12 N 1.32745 * 119.43284 * 301.16995 * 11 10 2 13 13 C 1.31474 * 121.73949 * 179.97438 * 12 11 10 14 14 C 1.40787 * 120.38838 * 0.02562 * 13 12 11 15 15 C 1.41193 * 120.56204 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00469 * 25.60048 * 15 14 13 17 17 C 1.39869 * 119.99922 * 205.59191 * 15 14 13 18 18 N 1.30905 * 119.99975 * 16.16435 * 17 15 14 19 19 Si 1.86801 * 120.00411 * 196.15699 * 17 15 14 20 20 H 1.48506 * 109.46670 * 60.00514 * 19 17 15 21 21 H 1.48493 * 109.47421 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47256 * 300.00829 * 19 17 15 23 23 C 1.41279 * 118.87076 * 359.97438 * 14 13 12 24 24 C 1.36666 * 118.40275 * 359.74557 * 23 14 13 25 25 Cl 1.73595 * 120.26698 * 180.26137 * 24 23 14 26 26 H 1.08997 * 109.47325 * 300.02556 * 1 2 3 27 27 H 1.09006 * 109.47160 * 60.03203 * 1 2 3 28 28 H 1.08998 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47264 * 59.99963 * 6 4 2 30 30 H 1.09002 * 109.47121 * 179.97438 * 6 4 2 31 31 H 1.08999 * 109.46910 * 299.99768 * 6 4 2 32 32 H 1.09001 * 109.52444 * 177.56061 * 7 4 2 33 33 H 1.08998 * 109.52507 * 297.68763 * 7 4 2 34 34 H 1.09003 * 109.50253 * 182.40821 * 8 7 4 35 35 H 1.08993 * 109.50097 * 62.28912 * 8 7 4 36 36 H 1.09000 * 109.46614 * 299.15960 * 9 8 7 37 37 H 1.09009 * 109.46412 * 179.19461 * 9 8 7 38 38 H 1.08001 * 119.80275 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00230 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.80241 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 1 1.6661 -1.7446 -1.2576 6 6 1.5473 0.0124 -2.4992 7 6 3.5710 -0.7359 -1.2356 8 6 4.0549 -1.4186 0.0468 9 6 3.4865 -0.6775 1.2591 10 7 2.0193 -0.6916 1.1994 11 6 1.4709 -0.1442 2.3462 12 7 1.6637 1.1421 2.6116 13 6 1.1634 1.7089 3.6872 14 6 0.3996 0.9560 4.5993 15 6 -0.1399 1.5611 5.7553 16 1 -0.3409 2.6221 5.7657 17 6 -0.4141 0.7862 6.8870 18 7 0.1063 -0.4092 7.0036 19 14 -1.5229 1.4573 8.2323 20 1 -2.8637 1.7533 7.6667 21 1 -1.6534 0.4494 9.3149 22 1 -0.9327 2.7030 8.7846 23 6 0.1812 -0.4151 4.3375 24 6 0.7186 -0.9538 3.2022 25 17 0.4747 -2.6316 2.8296 26 1 -0.3634 0.5142 0.8897 27 1 -0.3634 0.5134 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.9226 1.0356 -2.4917 30 1 1.9112 -0.5012 -3.3891 31 1 0.4574 0.0252 -2.5068 32 1 3.9380 -1.2861 -2.1020 33 1 3.9457 0.2871 -1.2683 34 1 5.1440 -1.3944 0.0833 35 1 3.7126 -2.4534 0.0595 36 1 3.8403 0.3534 1.2533 37 1 3.8175 -1.1697 2.1737 38 1 1.3401 2.7581 3.8727 39 1 -0.0835 -0.9465 7.7885 40 1 -0.4003 -1.0219 5.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166616169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:10 Heat of formation + Delta-G solvation = -4.981439 kcal Electronic energy + Delta-G solvation = -22096.951816 eV Core-core repulsion = 18935.718525 eV Total energy + Delta-G solvation = -3161.233291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29960 -39.42853 -37.11842 -36.24581 -34.75802 -33.89072 -32.39722 -31.19135 -29.15594 -27.27384 -26.68178 -24.59986 -23.54632 -22.23057 -22.18287 -20.40100 -19.40173 -17.86482 -17.37558 -16.81244 -16.57707 -15.96030 -15.50657 -15.45945 -14.91226 -14.80521 -14.33643 -14.22684 -13.70767 -13.60178 -13.45362 -13.30198 -13.02991 -12.90792 -12.82010 -12.62366 -12.59356 -12.45040 -12.37349 -12.01074 -11.75595 -11.61810 -11.49605 -11.25126 -11.14373 -11.02080 -10.29511 -10.04273 -9.36672 -9.28056 -8.76005 -6.50622 0.56103 0.87209 1.39273 1.48938 1.52602 1.55644 2.15759 2.59587 2.97083 3.49915 3.84508 3.91987 4.03121 4.14653 4.25764 4.40948 4.46924 4.59499 4.65986 4.68307 4.70771 4.77481 4.83455 4.93220 4.98067 5.00990 5.04967 5.09113 5.13564 5.16028 5.20864 5.27045 5.32836 5.37187 5.51280 5.62113 5.72237 5.82965 6.24805 6.29557 6.52316 6.66429 6.82487 7.51133 8.17112 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.004614 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.591464 B = 6067.053501 C = 6320.222455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.100 3.900 3 H 0.025 0.975 4 C -0.080 4.080 5 H 0.074 0.926 6 C -0.141 4.141 7 C -0.109 4.109 8 C -0.107 4.107 9 C 0.066 3.934 10 N -0.461 5.461 11 C 0.156 3.844 12 N -0.480 5.480 13 C -0.026 4.026 14 C 0.051 3.949 15 C -0.468 4.468 16 H 0.094 0.906 17 C 0.036 3.964 18 N -0.812 5.812 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.255 1.255 23 C -0.150 4.150 24 C -0.020 4.020 25 Cl -0.077 7.077 26 H 0.019 0.981 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.021 0.979 37 H 0.047 0.953 38 H 0.141 0.859 39 H 0.295 0.705 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -1.764 -10.507 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 H 0.043 0.957 4 C -0.099 4.099 5 H 0.092 0.908 6 C -0.198 4.198 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.062 4.062 10 N -0.184 5.184 11 C -0.073 4.073 12 N -0.190 5.190 13 C -0.189 4.189 14 C 0.046 3.954 15 C -0.496 4.496 16 H 0.112 0.888 17 C -0.181 4.181 18 N -0.436 5.436 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.179 1.179 23 C -0.176 4.176 24 C -0.051 4.051 25 Cl -0.049 7.049 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.158 0.842 39 H 0.106 0.894 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.332 -2.139 -11.008 11.454 hybrid contribution -0.676 0.457 1.808 1.983 sum 1.655 -1.683 -9.200 9.498 Atomic orbital electron populations 1.21751 0.95082 1.01593 1.00585 1.21572 0.94896 0.94765 0.89532 0.95717 1.21186 0.95872 0.99827 0.92988 0.90771 1.21824 1.01364 1.00101 0.96554 1.21619 0.94625 1.00664 0.97747 1.21559 1.00224 0.99642 0.93055 1.22011 0.86728 0.98332 0.99101 1.59698 1.07156 1.52181 0.99321 1.18718 1.05163 0.87556 0.95844 1.67244 1.20184 1.11731 1.19888 1.22585 1.02323 1.00072 0.93928 1.18727 0.90645 0.91853 0.94160 1.19819 1.36243 0.97182 0.96384 0.88825 1.26882 0.95056 0.94403 1.01793 1.69849 1.33607 1.10815 1.29377 0.85133 0.78656 0.79187 0.76179 1.18254 1.19264 1.17942 1.21277 1.03615 0.96845 0.95904 1.21293 1.01810 0.85273 0.96704 1.98244 1.95768 1.16230 1.94634 0.96135 0.90335 0.92492 0.93057 0.90755 0.92245 0.89516 0.92617 0.90004 0.91236 0.96033 0.93388 0.84153 0.89416 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.62 71.98 0.62 -3.86 16 2 C 0.10 3.35 1.74 44.94 0.08 3.43 16 3 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16 4 C -0.08 -2.02 2.40 -10.74 -0.03 -2.04 16 5 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 6 C -0.14 -2.83 8.87 71.98 0.64 -2.19 16 7 C -0.11 -2.47 5.29 30.68 0.16 -2.31 16 8 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 9 C 0.07 2.31 5.29 86.32 0.46 2.77 16 10 N -0.46 -17.64 3.84 -677.72 -2.60 -20.24 16 11 C 0.16 7.11 3.62 133.32 0.48 7.60 16 12 N -0.48 -22.96 9.66 -191.08 -1.85 -24.81 16 13 C -0.03 -1.27 10.97 85.37 0.94 -0.34 16 14 C 0.05 2.64 5.57 -21.18 -0.12 2.52 16 15 C -0.47 -23.29 9.06 23.39 0.21 -23.08 16 16 H 0.09 4.37 7.89 -2.91 -0.02 4.34 16 17 C 0.04 1.69 5.19 85.23 0.44 2.13 16 18 N -0.81 -40.02 10.97 21.82 0.24 -39.78 16 19 Si 0.99 35.25 29.59 68.60 2.03 37.28 16 20 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 C -0.15 -7.71 8.51 22.65 0.19 -7.51 16 24 C -0.02 -0.97 6.32 22.28 0.14 -0.83 16 25 Cl -0.08 -3.19 28.43 -2.72 -0.08 -3.26 16 26 H 0.02 0.81 7.08 -2.39 -0.02 0.79 16 27 H 0.08 2.19 6.45 -2.38 -0.02 2.17 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.18 6.45 -2.39 -0.02 1.16 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 37 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 38 H 0.14 6.38 8.06 -2.91 -0.02 6.36 16 39 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 40 H 0.12 6.56 6.28 -2.91 -0.02 6.54 16 Total: -1.00 -55.54 331.13 3.17 -52.37 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.03 Total: 24.74 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.41 Total: -26.30 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -4.21 Total: -84.83 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.08 Total: -3.26 kcal Total: -55.54 3.17 -52.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166616169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.386 kcal (2) G-P(sol) polarization free energy of solvation -55.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds