Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 C 1.52995 * 109.47108 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.36890 * 119.99727 * 262.39091 * 5 4 3 7 7 H 1.07998 * 120.00108 * 189.07414 * 6 5 4 8 8 C 1.38783 * 120.00240 * 9.06781 * 6 5 4 9 9 N 1.31595 * 119.99956 * 29.50717 * 8 6 5 10 10 Si 1.86803 * 119.99935 * 209.51135 * 8 6 5 11 11 H 1.48498 * 109.46964 * 94.99420 * 10 8 6 12 12 H 1.48500 * 109.46556 * 214.99177 * 10 8 6 13 13 H 1.48498 * 109.46954 * 334.99343 * 10 8 6 14 14 C 1.38920 * 120.00588 * 82.38744 * 5 4 3 15 15 C 1.39236 * 119.63982 * 185.00077 * 14 5 4 16 16 C 1.38208 * 119.17221 * 180.02562 * 15 14 5 17 17 C 1.39465 * 118.44807 * 359.97438 * 16 15 14 18 18 N 1.40007 * 120.40217 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00261 * 43.16512 * 18 17 16 20 20 N 1.34777 * 119.99915 * 176.23070 * 19 18 17 21 21 S 1.71194 * 119.99850 * 356.50331 * 19 18 17 22 22 C 1.38790 * 119.19232 * 0.25534 * 17 16 15 23 23 N 1.31845 * 120.76257 * 359.44978 * 22 17 16 24 24 H 1.08994 * 109.47353 * 59.99680 * 1 2 3 25 25 H 1.08995 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46556 * 300.00358 * 1 2 3 27 27 H 1.09001 * 109.46556 * 239.99641 * 2 1 3 28 28 H 1.08998 * 109.46706 * 120.00035 * 2 1 3 29 29 H 1.09000 * 109.46987 * 59.99822 * 3 2 1 30 30 H 1.09003 * 109.47095 * 300.00181 * 3 2 1 31 31 H 1.08996 * 109.47246 * 59.99899 * 4 3 2 32 32 H 1.09003 * 109.46918 * 299.99834 * 4 3 2 33 33 H 0.96995 * 119.99984 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.41358 * 0.02562 * 15 14 5 35 35 H 1.08003 * 120.77876 * 180.02562 * 16 15 14 36 36 H 0.97006 * 120.00041 * 223.16665 * 18 17 16 37 37 H 0.97003 * 119.99978 * 180.27755 * 20 19 18 38 38 H 0.96996 * 120.00548 * 0.27110 * 20 19 18 39 39 H 1.08000 * 119.61643 * 179.74617 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.4341 3.4172 -1.1749 7 1 4.9294 4.3768 -1.1609 8 6 4.1787 2.7858 -2.3841 9 7 3.1399 1.9867 -2.5026 10 14 5.3096 3.0703 -3.8435 11 1 6.3268 1.9899 -3.8994 12 1 4.5120 3.0646 -5.0961 13 1 5.9887 4.3825 -3.6950 14 6 4.1403 3.5310 1.1928 15 6 4.5054 4.8745 1.1729 16 6 4.5843 5.5688 2.3653 17 6 4.2926 4.8916 3.5490 18 7 4.3602 5.5550 4.7801 19 6 3.8557 6.7986 4.9040 20 7 3.8521 7.4077 6.1063 21 16 3.2131 7.6019 3.5356 22 6 3.9402 3.5504 3.4924 23 7 3.8692 2.9200 2.3366 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 2.9612 1.5457 -3.3478 34 1 4.7242 5.3678 0.2374 35 1 4.8646 6.6118 2.3800 36 1 4.7702 5.1197 5.5438 37 1 3.4853 8.3012 6.1963 38 1 4.2162 6.9526 6.8816 39 1 3.7169 3.0182 4.4052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = 68.961294 kcal Electronic energy + Delta-G solvation = -21362.275611 eV Core-core repulsion = 18238.585174 eV Total energy + Delta-G solvation = -3123.690436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65297 -38.21987 -36.45065 -34.19320 -33.66938 -31.91324 -30.98531 -28.69822 -27.62655 -24.92071 -24.14804 -22.74773 -22.25179 -20.76947 -20.05394 -18.64024 -18.19189 -17.61924 -16.42332 -15.67758 -15.31386 -15.11776 -14.68324 -14.43309 -13.91182 -13.76481 -13.54716 -13.14904 -12.74709 -12.33011 -12.07605 -11.95354 -11.68111 -11.44278 -11.23298 -10.92484 -10.81205 -10.56226 -10.44896 -10.34699 -10.18022 -10.12434 -9.52486 -9.21735 -8.74017 -8.47063 -8.36375 -7.54491 -6.90840 -6.71686 -6.53428 -3.75608 1.43940 2.18965 2.39742 2.64098 3.05949 3.13610 3.15699 3.18698 3.83855 3.92432 4.55652 4.73465 5.13339 5.42370 5.71090 5.73145 5.88632 5.93983 6.03309 6.19700 6.28855 6.42302 6.45092 6.51208 6.58476 6.64219 6.76700 6.80140 6.91882 6.94629 7.05155 7.08411 7.23158 7.32511 7.38066 7.61021 7.65487 7.74177 7.97573 8.40489 8.95166 9.15434 9.64237 10.35484 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004647 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.646199 B = 6023.725304 C = 7192.786008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.116 4.116 4 C 0.140 3.860 5 N -0.400 5.400 6 C -0.312 4.312 7 H 0.109 0.891 8 C 0.036 3.964 9 N -0.834 5.834 10 Si 0.921 3.079 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.356 3.644 15 C -0.251 4.251 16 C 0.021 3.979 17 C -0.097 4.097 18 N -0.588 5.588 19 C 0.556 3.444 20 N -0.816 5.816 21 S -0.644 6.644 22 C 0.170 3.830 23 N -0.559 5.559 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.273 0.727 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.396 0.604 37 H 0.428 0.572 38 H 0.391 0.609 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 0.564 12.127 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.154 4.154 4 C 0.017 3.983 5 N -0.084 5.084 6 C -0.440 4.440 7 H 0.126 0.874 8 C -0.172 4.172 9 N -0.467 5.467 10 Si 0.746 3.254 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.190 1.190 14 C 0.115 3.885 15 C -0.279 4.279 16 C -0.008 4.008 17 C -0.198 4.198 18 N -0.209 5.209 19 C 0.194 3.806 20 N -0.362 5.362 21 S -0.516 6.516 22 C 0.001 3.999 23 N -0.279 5.279 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.232 0.768 37 H 0.263 0.737 38 H 0.221 0.779 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.462 -0.229 10.500 10.604 hybrid contribution 1.026 0.586 0.895 1.482 sum 2.489 0.357 11.395 11.669 Atomic orbital electron populations 1.21718 0.96999 1.00115 1.01425 1.21346 0.94754 0.98373 1.00529 1.21852 0.95961 0.95182 1.02399 1.21328 0.94164 0.82356 1.00454 1.42891 1.52401 1.10456 1.02611 1.19823 1.35182 1.06776 0.82202 0.87379 1.25274 0.95839 0.97072 0.98988 1.70256 1.21254 1.28451 1.26732 0.85991 0.80225 0.79340 0.79800 1.20157 1.20808 1.19016 1.18309 0.95878 0.88273 0.86054 1.20961 1.14894 0.93830 0.98212 1.21265 0.90430 0.98842 0.90240 1.17711 1.24452 0.94047 0.83632 1.41946 1.53449 1.12421 1.13049 1.22353 0.82123 0.85701 0.90413 1.42829 1.64608 1.21647 1.07158 1.93549 1.63972 1.66198 1.27922 1.21717 0.93383 0.89754 0.94998 1.67097 1.25541 1.38362 0.96924 0.92913 0.93929 0.93444 0.92455 0.93572 0.94234 0.88723 0.89534 0.93515 0.91683 0.85791 0.84472 0.76794 0.73737 0.77881 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.11 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.12 -2.51 5.05 -26.73 -0.14 -2.65 16 4 C 0.14 3.21 4.56 -4.05 -0.02 3.19 16 5 N -0.40 -9.79 2.74 -115.04 -0.32 -10.10 16 6 C -0.31 -7.76 9.18 -15.09 -0.14 -7.90 16 7 H 0.11 2.66 5.96 -52.49 -0.31 2.34 16 8 C 0.04 0.86 4.75 -17.45 -0.08 0.78 16 9 N -0.83 -20.10 8.97 55.49 0.50 -19.60 16 10 Si 0.92 18.81 29.64 -169.99 -5.04 13.77 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 C 0.36 8.41 7.29 -155.00 -1.13 7.28 16 15 C -0.25 -5.67 9.29 -39.22 -0.36 -6.03 16 16 C 0.02 0.42 7.98 -39.14 -0.31 0.11 16 17 C -0.10 -1.72 6.01 -83.46 -0.50 -2.22 16 18 N -0.59 -7.65 5.34 -11.26 -0.06 -7.71 16 19 C 0.56 7.59 8.01 -86.92 -0.70 6.90 16 20 N -0.82 -6.53 8.87 29.96 0.27 -6.26 16 21 S -0.64 -12.65 26.26 -107.50 -2.82 -15.47 16 22 C 0.17 3.11 11.12 -17.34 -0.19 2.92 16 23 N -0.56 -12.20 9.20 -12.25 -0.11 -12.31 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 2.31 6.33 -51.93 -0.33 1.98 16 31 H 0.09 2.07 5.95 -51.93 -0.31 1.76 16 32 H 0.05 1.05 7.55 -51.93 -0.39 0.65 16 33 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 34 H 0.12 2.84 6.04 -52.49 -0.32 2.52 16 35 H 0.14 2.81 5.98 -40.95 -0.24 2.57 16 36 H 0.40 3.46 8.84 -40.82 -0.36 3.10 16 37 H 0.43 3.11 8.81 -40.82 -0.36 2.75 16 38 H 0.39 1.64 8.85 -40.82 -0.36 1.28 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -30.36 330.96 -11.04 -41.40 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.08 Total: 13.06 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.36 Total: -1.75 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -56.00 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -2.82 Total: -15.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.36 -11.04 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.366 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds