Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 C 1.52995 * 109.47108 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.36890 * 119.99727 * 262.39091 * 5 4 3 7 7 H 1.07998 * 120.00108 * 189.07414 * 6 5 4 8 8 C 1.38783 * 120.00240 * 9.06781 * 6 5 4 9 9 N 1.31595 * 119.99956 * 29.50717 * 8 6 5 10 10 Si 1.86803 * 119.99935 * 209.51135 * 8 6 5 11 11 H 1.48498 * 109.46964 * 94.99420 * 10 8 6 12 12 H 1.48500 * 109.46556 * 214.99177 * 10 8 6 13 13 H 1.48498 * 109.46954 * 334.99343 * 10 8 6 14 14 C 1.38920 * 120.00588 * 82.38744 * 5 4 3 15 15 C 1.39236 * 119.63982 * 185.00077 * 14 5 4 16 16 C 1.38208 * 119.17221 * 180.02562 * 15 14 5 17 17 C 1.39465 * 118.44807 * 359.97438 * 16 15 14 18 18 N 1.40007 * 120.40217 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00261 * 43.16512 * 18 17 16 20 20 N 1.34777 * 119.99915 * 176.23070 * 19 18 17 21 21 S 1.71194 * 119.99850 * 356.50331 * 19 18 17 22 22 C 1.38790 * 119.19232 * 0.25534 * 17 16 15 23 23 N 1.31845 * 120.76257 * 359.44978 * 22 17 16 24 24 H 1.08994 * 109.47353 * 59.99680 * 1 2 3 25 25 H 1.08995 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46556 * 300.00358 * 1 2 3 27 27 H 1.09001 * 109.46556 * 239.99641 * 2 1 3 28 28 H 1.08998 * 109.46706 * 120.00035 * 2 1 3 29 29 H 1.09000 * 109.46987 * 59.99822 * 3 2 1 30 30 H 1.09003 * 109.47095 * 300.00181 * 3 2 1 31 31 H 1.08996 * 109.47246 * 59.99899 * 4 3 2 32 32 H 1.09003 * 109.46918 * 299.99834 * 4 3 2 33 33 H 0.96995 * 119.99984 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.41358 * 0.02562 * 15 14 5 35 35 H 1.08003 * 120.77876 * 180.02562 * 16 15 14 36 36 H 0.97006 * 120.00041 * 223.16665 * 18 17 16 37 37 H 0.97003 * 119.99978 * 180.27755 * 20 19 18 38 38 H 0.96996 * 120.00548 * 0.27110 * 20 19 18 39 39 H 1.08000 * 119.61643 * 179.74617 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.4341 3.4172 -1.1749 7 1 4.9294 4.3768 -1.1609 8 6 4.1787 2.7858 -2.3841 9 7 3.1399 1.9867 -2.5026 10 14 5.3096 3.0703 -3.8435 11 1 6.3268 1.9899 -3.8994 12 1 4.5120 3.0646 -5.0961 13 1 5.9887 4.3825 -3.6950 14 6 4.1403 3.5310 1.1928 15 6 4.5054 4.8745 1.1729 16 6 4.5843 5.5688 2.3653 17 6 4.2926 4.8916 3.5490 18 7 4.3602 5.5550 4.7801 19 6 3.8557 6.7986 4.9040 20 7 3.8521 7.4077 6.1063 21 16 3.2131 7.6019 3.5356 22 6 3.9402 3.5504 3.4924 23 7 3.8692 2.9200 2.3366 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 2.9612 1.5457 -3.3478 34 1 4.7242 5.3678 0.2374 35 1 4.8646 6.6118 2.3800 36 1 4.7702 5.1197 5.5438 37 1 3.4853 8.3012 6.1963 38 1 4.2162 6.9526 6.8816 39 1 3.7169 3.0182 4.4052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = 50.389022 kcal Electronic energy + Delta-G solvation = -21363.080965 eV Core-core repulsion = 18238.585174 eV Total energy + Delta-G solvation = -3124.495791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19809 -39.63383 -38.02368 -35.54513 -35.13531 -33.61906 -32.62588 -30.24872 -29.23211 -26.58690 -25.56119 -24.22863 -23.82720 -22.34166 -21.69877 -19.95084 -19.38867 -19.24615 -18.11003 -17.03620 -16.80202 -16.53418 -16.27697 -15.99234 -15.41942 -15.30247 -15.10893 -14.73097 -14.22446 -13.94359 -13.73079 -13.54230 -13.27343 -13.02732 -12.85207 -12.43914 -12.23887 -12.21043 -12.10591 -11.89220 -11.69369 -11.49107 -11.24129 -10.86777 -10.37839 -10.18342 -9.96700 -9.04463 -8.58741 -8.38637 -8.19632 -5.60239 0.16166 0.79341 0.91720 1.03254 1.44532 1.48540 1.56637 1.83661 2.24430 2.81280 2.94472 3.03905 3.43318 3.92946 4.24646 4.31058 4.36338 4.48101 4.55884 4.61702 4.71589 4.92335 5.00943 5.06886 5.09351 5.16378 5.25775 5.27481 5.35354 5.39821 5.44205 5.57268 5.60764 5.68891 5.92616 5.93801 6.16053 6.38947 6.54173 6.64879 7.23567 7.39948 7.90838 8.59978 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004647 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.646199 B = 6023.725304 C = 7192.786008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.101 4.101 4 C 0.151 3.849 5 N -0.427 5.427 6 C -0.342 4.342 7 H 0.097 0.903 8 C 0.003 3.997 9 N -0.856 5.856 10 Si 0.982 3.018 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.348 3.652 15 C -0.278 4.278 16 C 0.024 3.976 17 C -0.072 4.072 18 N -0.573 5.573 19 C 0.590 3.410 20 N -0.770 5.770 21 S -0.760 6.760 22 C 0.169 3.831 23 N -0.574 5.574 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.274 0.726 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.427 0.573 37 H 0.438 0.562 38 H 0.421 0.579 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 0.075 15.690 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.139 4.139 4 C 0.028 3.972 5 N -0.114 5.114 6 C -0.469 4.469 7 H 0.114 0.886 8 C -0.203 4.203 9 N -0.490 5.490 10 Si 0.806 3.194 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.193 1.193 14 C 0.108 3.892 15 C -0.307 4.307 16 C -0.005 4.005 17 C -0.174 4.174 18 N -0.197 5.197 19 C 0.223 3.777 20 N -0.317 5.317 21 S -0.634 6.634 22 C 0.003 3.997 23 N -0.294 5.294 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.153 0.847 36 H 0.268 0.732 37 H 0.275 0.725 38 H 0.256 0.744 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.879 -0.689 14.212 14.352 hybrid contribution 0.930 0.922 0.253 1.333 sum 2.809 0.233 14.464 14.736 Atomic orbital electron populations 1.21669 0.95207 1.01815 1.01026 1.21290 0.96298 0.95776 1.00988 1.21663 0.95379 0.97088 0.99787 1.21197 0.94556 0.81966 0.99478 1.42949 1.54739 1.10985 1.02718 1.19871 1.36666 1.07194 0.83217 0.88554 1.25925 0.96621 0.97067 1.00654 1.70335 1.21970 1.29444 1.27233 0.85086 0.78437 0.78941 0.76969 1.19752 1.20567 1.19286 1.18583 0.95432 0.88597 0.86637 1.20956 1.16954 0.94115 0.98667 1.21362 0.89822 0.98641 0.90711 1.17646 1.21226 0.93967 0.84538 1.41538 1.53708 1.12001 1.12486 1.21540 0.80883 0.85047 0.90246 1.42584 1.61545 1.21640 1.05927 1.93957 1.68483 1.68629 1.32294 1.22449 0.91723 0.90129 0.95449 1.67165 1.25954 1.38982 0.97330 0.93882 0.91128 0.93297 0.92752 0.92216 0.96054 0.91765 0.91042 0.93458 0.91602 0.87548 0.84667 0.73182 0.72543 0.74395 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.11 -3.79 5.93 30.60 0.18 -3.61 16 3 C -0.10 -4.52 5.05 30.59 0.15 -4.37 16 4 C 0.15 7.19 4.56 86.38 0.39 7.59 16 5 N -0.43 -21.94 2.74 -517.88 -1.42 -23.36 16 6 C -0.34 -18.06 9.18 84.03 0.77 -17.29 16 7 H 0.10 5.13 5.96 -2.91 -0.02 5.11 16 8 C 0.00 0.14 4.75 84.86 0.40 0.54 16 9 N -0.86 -43.15 8.97 21.64 0.19 -42.95 16 10 Si 0.98 40.18 29.64 68.60 2.03 42.21 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 14 C 0.35 16.92 7.29 133.09 0.97 17.89 16 15 C -0.28 -13.15 9.29 22.50 0.21 -12.94 16 16 C 0.02 0.96 7.98 22.56 0.18 1.14 16 17 C -0.07 -2.37 6.01 38.26 0.23 -2.14 16 18 N -0.57 -12.33 5.34 -189.53 -1.01 -13.35 16 19 C 0.59 13.95 8.01 179.06 1.44 15.38 16 20 N -0.77 -8.35 8.87 -59.12 -0.52 -8.88 16 21 S -0.76 -29.52 26.26 -56.49 -1.48 -31.00 16 22 C 0.17 5.71 11.12 84.82 0.94 6.65 16 23 N -0.57 -24.71 9.20 -192.68 -1.77 -26.48 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 3.29 6.33 -2.39 -0.02 3.28 16 31 H 0.07 3.57 5.95 -2.39 -0.01 3.56 16 32 H 0.05 2.17 7.55 -2.39 -0.02 2.15 16 33 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 34 H 0.11 5.29 6.04 -2.91 -0.02 5.27 16 35 H 0.14 5.62 5.98 -10.25 -0.06 5.56 16 36 H 0.43 4.75 8.84 -92.70 -0.82 3.93 16 37 H 0.44 4.33 8.81 -92.71 -0.82 3.51 16 38 H 0.42 0.74 8.85 -92.71 -0.82 -0.08 16 39 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -72.48 330.96 1.21 -71.27 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -1.39 Total: 27.30 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.59 Total: 5.22 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.53 Total: -115.01 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: -29.52 SS G_CDS: -1.48 Total: -31.00 kcal Total: -72.48 1.21 -71.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.662 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds