Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.52995 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46895 * 179.97438 * 4 3 2 6 6 C 1.36868 * 120.00265 * 270.00181 * 5 4 3 7 7 H 1.08005 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.38831 * 120.00114 * 179.97438 * 6 5 4 9 9 N 1.31560 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46803 * 60.00613 * 10 8 6 12 12 H 1.48502 * 109.46654 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47162 * 300.00016 * 10 8 6 14 14 C 1.38982 * 119.99676 * 90.00402 * 5 4 3 15 15 C 1.39493 * 120.80039 * 270.01999 * 14 5 4 16 16 C 1.38048 * 118.85566 * 179.91237 * 15 14 5 17 17 Cl 1.73599 * 119.56732 * 180.02562 * 16 15 14 18 18 N 1.31932 * 120.86775 * 0.10788 * 16 15 14 19 19 C 1.32444 * 122.24715 * 359.93155 * 18 16 15 20 20 C 1.37865 * 120.32610 * 359.97438 * 19 18 16 21 21 C 1.51216 * 110.02349 * 180.02562 * 20 19 18 22 22 C 1.54382 * 105.10082 * 17.10764 * 21 20 19 23 23 C 1.51501 * 130.06185 * 179.97438 * 19 18 16 24 24 H 1.08998 * 109.46938 * 299.99773 * 1 2 3 25 25 H 1.08995 * 109.47132 * 59.99690 * 1 2 3 26 26 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47205 * 240.00095 * 2 1 3 28 28 H 1.09002 * 109.47329 * 119.99974 * 2 1 3 29 29 H 1.08998 * 109.46900 * 60.00203 * 3 2 1 30 30 H 1.09002 * 109.46869 * 300.00256 * 3 2 1 31 31 H 1.09007 * 109.47200 * 60.00286 * 4 3 2 32 32 H 1.09002 * 109.47642 * 299.99978 * 4 3 2 33 33 H 0.97003 * 120.00064 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.57213 * 359.93787 * 15 14 5 35 35 H 1.08997 * 110.31824 * 136.01146 * 21 20 19 36 36 H 1.09001 * 110.31745 * 258.10447 * 21 20 19 37 37 H 1.08996 * 110.82877 * 91.97246 * 22 21 20 38 38 H 1.09005 * 110.82981 * 215.34809 * 22 21 20 39 39 H 1.08998 * 110.29386 * 281.72943 * 23 19 18 40 40 H 1.08999 * 110.29294 * 43.86212 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2870 3.4682 -1.1855 7 1 4.1077 2.9584 -2.1207 8 6 4.7492 4.7773 -1.1861 9 7 4.9681 5.3981 -0.0470 10 14 5.0619 5.6568 -2.8042 11 1 3.7999 5.7217 -3.5842 12 1 5.5472 7.0339 -2.5333 13 1 6.0866 4.9142 -3.5813 14 6 4.2896 3.4794 1.2034 15 6 3.2786 4.2155 1.8214 16 6 3.5517 4.8494 3.0170 17 17 2.3070 5.7699 3.8024 18 7 4.7468 4.7662 3.5696 19 6 5.7349 4.0791 3.0167 20 6 5.5395 3.4168 1.8234 21 6 6.8116 2.7128 1.4077 22 6 7.6752 2.6544 2.6861 23 6 7.1586 3.8667 3.4890 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 5.2914 6.3127 -0.0474 34 1 2.2990 4.2879 1.3726 35 1 6.5890 1.7058 1.0551 36 1 7.3220 3.2813 0.6302 37 1 7.4997 1.7264 3.2302 38 1 8.7323 2.7667 2.4452 39 1 7.7637 4.7474 3.2739 40 1 7.1740 3.6480 4.5567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = 30.496349 kcal Electronic energy + Delta-G solvation = -22235.458172 eV Core-core repulsion = 19075.763313 eV Total energy + Delta-G solvation = -3159.694859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.72390 -36.70772 -36.12702 -34.86689 -34.29009 -31.51628 -30.41239 -28.31396 -27.74573 -26.93676 -24.53701 -23.02121 -21.43942 -20.75649 -20.53244 -19.68177 -17.48896 -15.99903 -15.38841 -15.13440 -14.98412 -14.62442 -14.01140 -13.76033 -13.62799 -13.42210 -12.99858 -12.59806 -12.29584 -12.19355 -12.08606 -11.66788 -11.41565 -11.19241 -11.03660 -10.88920 -10.80804 -10.72255 -10.64450 -10.56558 -10.52838 -10.39350 -10.13720 -10.07796 -9.94476 -9.06252 -8.43325 -8.21500 -7.49206 -7.28817 -5.79668 -3.43148 2.19869 2.53579 2.73442 3.28465 3.33623 3.35920 4.29499 4.78051 4.89041 4.98728 5.23728 5.28526 5.31042 5.43045 5.47738 5.48970 5.72264 5.79261 5.93160 6.05442 6.12616 6.14360 6.18881 6.20459 6.27775 6.31075 6.35175 6.38902 6.45563 6.55628 6.69097 6.70182 6.77727 6.85387 6.92344 7.04810 7.51807 7.54653 7.68974 8.08315 8.89871 9.06773 9.58765 9.96565 11.09255 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.007736 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.595282 B = 3618.372842 C = 4412.116591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.155 3.845 5 N -0.570 5.570 6 C -0.260 4.260 7 H 0.085 0.915 8 C 0.001 3.999 9 N -0.897 5.897 10 Si 0.916 3.084 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.283 1.283 14 C 0.369 3.631 15 C -0.149 4.149 16 C 0.181 3.819 17 Cl -0.079 7.079 18 N -0.510 5.510 19 C 0.119 3.881 20 C -0.135 4.135 21 C -0.058 4.058 22 C -0.120 4.120 23 C -0.058 4.058 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -7.621 3.318 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.030 3.970 5 N -0.287 5.287 6 C -0.387 4.387 7 H 0.103 0.897 8 C -0.198 4.198 9 N -0.540 5.540 10 Si 0.746 3.254 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.210 1.210 14 C 0.265 3.735 15 C -0.173 4.173 16 C 0.017 3.983 17 Cl -0.051 7.051 18 N -0.223 5.223 19 C -0.018 4.018 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.158 4.158 23 C -0.097 4.097 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.607 -6.918 4.111 8.070 hybrid contribution -0.264 0.716 -1.672 1.837 sum -0.871 -6.202 2.440 6.721 Atomic orbital electron populations 1.21759 0.96504 1.00739 1.01725 1.21485 0.95344 0.97871 1.01296 1.22244 0.98551 0.95097 1.02240 1.20871 0.91913 0.84516 0.99739 1.41471 1.75801 1.10237 1.01176 1.19288 1.39915 0.95356 0.84189 0.89729 1.24883 1.00502 0.97040 0.97362 1.69599 1.48994 1.12559 1.22888 0.86136 0.78108 0.78809 0.82389 1.20964 1.21530 1.20957 1.16358 0.88462 0.85200 0.83485 1.21901 1.01126 1.00197 0.94114 1.20751 0.88827 0.96934 0.91764 1.98307 1.50818 1.73944 1.82079 1.65687 0.99331 1.20413 1.36831 1.20962 0.93412 0.94487 0.92958 1.21527 0.95626 1.00941 0.95934 1.20613 0.92672 0.99605 0.96678 1.22318 0.99291 0.97510 0.96693 1.20801 0.90739 0.98513 0.99610 0.92962 0.92923 0.93444 0.92422 0.92583 0.92602 0.91776 0.92536 0.94002 0.92625 0.86298 0.91922 0.90472 0.91582 0.91074 0.90440 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.14 -2.33 5.54 -26.73 -0.15 -2.48 16 4 C 0.15 2.84 5.65 -4.04 -0.02 2.82 16 5 N -0.57 -12.82 2.53 -112.91 -0.29 -13.11 16 6 C -0.26 -6.41 9.80 -15.08 -0.15 -6.56 16 7 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 8 C 0.00 0.01 5.44 -17.45 -0.10 -0.08 16 9 N -0.90 -24.08 9.33 55.49 0.52 -23.56 16 10 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.37 8.51 2.88 -83.62 -0.24 8.27 16 15 C -0.15 -3.44 8.93 -39.18 -0.35 -3.79 16 16 C 0.18 4.08 7.27 -17.58 -0.13 3.96 16 17 Cl -0.08 -1.56 29.10 -51.86 -1.51 -3.06 16 18 N -0.51 -11.61 10.33 -6.41 -0.07 -11.67 16 19 C 0.12 2.54 7.32 -82.07 -0.60 1.94 16 20 C -0.14 -2.95 5.23 -103.97 -0.54 -3.50 16 21 C -0.06 -1.08 6.72 -26.91 -0.18 -1.26 16 22 C -0.12 -1.78 7.09 -25.32 -0.18 -1.96 16 23 C -0.06 -0.98 6.77 -26.80 -0.18 -1.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 32 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -27.45 342.76 -10.11 -37.56 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.30 Total: -0.20 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.61 Total: -6.99 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.17 Total: -48.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.51 Total: -3.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.45 -10.11 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.056 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds