Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.52995 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46895 * 179.97438 * 4 3 2 6 6 C 1.36868 * 120.00265 * 270.00181 * 5 4 3 7 7 H 1.08005 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.38831 * 120.00114 * 179.97438 * 6 5 4 9 9 N 1.31560 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46803 * 60.00613 * 10 8 6 12 12 H 1.48502 * 109.46654 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47162 * 300.00016 * 10 8 6 14 14 C 1.38982 * 119.99676 * 90.00402 * 5 4 3 15 15 C 1.39493 * 120.80039 * 270.01999 * 14 5 4 16 16 C 1.38048 * 118.85566 * 179.91237 * 15 14 5 17 17 Cl 1.73599 * 119.56732 * 180.02562 * 16 15 14 18 18 N 1.31932 * 120.86775 * 0.10788 * 16 15 14 19 19 C 1.32444 * 122.24715 * 359.93155 * 18 16 15 20 20 C 1.37865 * 120.32610 * 359.97438 * 19 18 16 21 21 C 1.51216 * 110.02349 * 180.02562 * 20 19 18 22 22 C 1.54382 * 105.10082 * 17.10764 * 21 20 19 23 23 C 1.51501 * 130.06185 * 179.97438 * 19 18 16 24 24 H 1.08998 * 109.46938 * 299.99773 * 1 2 3 25 25 H 1.08995 * 109.47132 * 59.99690 * 1 2 3 26 26 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47205 * 240.00095 * 2 1 3 28 28 H 1.09002 * 109.47329 * 119.99974 * 2 1 3 29 29 H 1.08998 * 109.46900 * 60.00203 * 3 2 1 30 30 H 1.09002 * 109.46869 * 300.00256 * 3 2 1 31 31 H 1.09007 * 109.47200 * 60.00286 * 4 3 2 32 32 H 1.09002 * 109.47642 * 299.99978 * 4 3 2 33 33 H 0.97003 * 120.00064 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.57213 * 359.93787 * 15 14 5 35 35 H 1.08997 * 110.31824 * 136.01146 * 21 20 19 36 36 H 1.09001 * 110.31745 * 258.10447 * 21 20 19 37 37 H 1.08996 * 110.82877 * 91.97246 * 22 21 20 38 38 H 1.09005 * 110.82981 * 215.34809 * 22 21 20 39 39 H 1.08998 * 110.29386 * 281.72943 * 23 19 18 40 40 H 1.08999 * 110.29294 * 43.86212 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2870 3.4682 -1.1855 7 1 4.1077 2.9584 -2.1207 8 6 4.7492 4.7773 -1.1861 9 7 4.9681 5.3981 -0.0470 10 14 5.0619 5.6568 -2.8042 11 1 3.7999 5.7217 -3.5842 12 1 5.5472 7.0339 -2.5333 13 1 6.0866 4.9142 -3.5813 14 6 4.2896 3.4794 1.2034 15 6 3.2786 4.2155 1.8214 16 6 3.5517 4.8494 3.0170 17 17 2.3070 5.7699 3.8024 18 7 4.7468 4.7662 3.5696 19 6 5.7349 4.0791 3.0167 20 6 5.5395 3.4168 1.8234 21 6 6.8116 2.7128 1.4077 22 6 7.6752 2.6544 2.6861 23 6 7.1586 3.8667 3.4890 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 5.2914 6.3127 -0.0474 34 1 2.2990 4.2879 1.3726 35 1 6.5890 1.7058 1.0551 36 1 7.3220 3.2813 0.6302 37 1 7.4997 1.7264 3.2302 38 1 8.7323 2.7667 2.4452 39 1 7.7637 4.7474 3.2739 40 1 7.1740 3.6480 4.5567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = 18.617165 kcal Electronic energy + Delta-G solvation = -22235.973292 eV Core-core repulsion = 19075.763313 eV Total energy + Delta-G solvation = -3160.209979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34856 -38.29937 -37.72383 -36.37711 -35.67479 -33.33097 -31.99207 -29.83486 -29.22406 -28.43501 -26.28984 -24.45054 -22.90491 -22.38281 -21.80411 -21.24279 -19.22278 -17.63393 -17.10291 -16.72793 -16.28000 -16.20110 -15.67979 -15.45127 -15.14866 -14.71946 -14.60629 -13.98401 -13.70012 -13.59793 -13.44109 -13.15956 -12.95697 -12.81238 -12.67388 -12.38054 -12.34301 -12.21962 -12.14631 -11.97726 -11.90951 -11.89905 -11.69394 -11.52166 -11.33342 -10.90261 -10.13203 -9.97142 -9.16582 -9.07334 -7.71638 -5.35905 0.49950 0.82106 1.05794 1.46009 1.47138 1.52740 2.45232 3.08784 3.28760 3.35712 3.48396 3.91626 4.12493 4.19754 4.26098 4.31583 4.39531 4.46445 4.51771 4.55131 4.78931 4.82384 4.93700 4.94123 4.99862 5.02470 5.05021 5.11182 5.16202 5.19330 5.25862 5.36664 5.42416 5.46446 5.47515 5.55611 5.58973 5.88065 6.00082 6.18613 7.14285 7.20664 7.80243 8.09812 9.11709 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.009043 B = 0.007736 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.595282 B = 3618.372842 C = 4412.116591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.130 4.130 4 C 0.151 3.849 5 N -0.581 5.581 6 C -0.255 4.255 7 H 0.090 0.910 8 C -0.047 4.047 9 N -0.915 5.915 10 Si 0.969 3.031 11 H -0.283 1.283 12 H -0.304 1.304 13 H -0.276 1.276 14 C 0.355 3.645 15 C -0.165 4.165 16 C 0.170 3.830 17 Cl -0.061 7.061 18 N -0.525 5.525 19 C 0.108 3.892 20 C -0.153 4.153 21 C -0.056 4.056 22 C -0.103 4.103 23 C -0.057 4.057 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.245 0.755 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -9.292 3.573 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.170 4.170 4 C 0.027 3.973 5 N -0.298 5.298 6 C -0.383 4.383 7 H 0.108 0.892 8 C -0.242 4.242 9 N -0.561 5.561 10 Si 0.798 3.202 11 H -0.209 1.209 12 H -0.231 1.231 13 H -0.202 1.202 14 C 0.251 3.749 15 C -0.189 4.189 16 C 0.006 3.994 17 Cl -0.033 7.033 18 N -0.238 5.238 19 C -0.029 4.029 20 C -0.157 4.157 21 C -0.094 4.094 22 C -0.140 4.140 23 C -0.095 4.095 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.162 -8.631 4.362 9.671 hybrid contribution -0.569 1.200 -1.739 2.188 sum -0.408 -7.430 2.623 7.890 Atomic orbital electron populations 1.21745 0.95438 1.02028 1.01380 1.21437 0.96248 0.95310 1.02322 1.22083 0.97182 0.97252 1.00497 1.21067 0.92923 0.82734 1.00528 1.41667 1.76127 1.11467 1.00543 1.19550 1.38200 0.95335 0.85229 0.89226 1.25460 1.01456 0.97913 0.99411 1.69824 1.50483 1.11659 1.24096 0.85298 0.77882 0.77114 0.79894 1.20885 1.23062 1.20161 1.16604 0.89106 0.85375 0.83772 1.21874 1.00873 1.01322 0.94850 1.20946 0.89443 0.97066 0.91900 1.98296 1.49958 1.73374 1.81626 1.65837 0.99661 1.21099 1.37249 1.21820 0.94940 0.93231 0.92927 1.21916 0.96151 1.01379 0.96282 1.20641 0.91735 0.98950 0.98078 1.22318 0.99962 0.97596 0.94151 1.20969 0.87762 0.99580 1.01220 0.93438 0.93224 0.91312 0.91264 0.91627 0.94312 0.93532 0.91634 0.93102 0.94333 0.87541 0.91399 0.92704 0.89310 0.88238 0.90152 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -2.83 5.93 30.59 0.18 -2.65 16 3 C -0.13 -4.27 5.54 30.59 0.17 -4.10 16 4 C 0.15 5.47 5.65 86.38 0.49 5.96 16 5 N -0.58 -26.26 2.53 -511.13 -1.29 -27.56 16 6 C -0.26 -12.61 9.80 84.05 0.82 -11.79 16 7 H 0.09 4.25 7.83 -2.91 -0.02 4.22 16 8 C -0.05 -2.43 5.44 84.88 0.46 -1.97 16 9 N -0.92 -50.21 9.33 21.65 0.20 -50.01 16 10 Si 0.97 43.44 29.55 68.60 2.03 45.47 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 14 C 0.35 16.58 2.88 38.66 0.11 16.69 16 15 C -0.16 -7.81 8.93 22.53 0.20 -7.61 16 16 C 0.17 7.78 7.27 84.63 0.61 8.39 16 17 Cl -0.06 -2.39 29.10 -2.72 -0.08 -2.46 16 18 N -0.53 -23.87 10.33 -174.21 -1.80 -25.67 16 19 C 0.11 4.53 7.32 42.63 0.31 4.84 16 20 C -0.15 -6.62 5.23 -19.44 -0.10 -6.72 16 21 C -0.06 -2.03 6.72 30.48 0.20 -1.82 16 22 C -0.10 -2.71 7.09 31.51 0.22 -2.49 16 23 C -0.06 -1.79 6.77 30.55 0.21 -1.58 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.22 8.04 -2.38 -0.02 2.21 16 32 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -59.56 342.76 4.68 -54.88 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.01 Total: 12.77 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.61 Total: -7.41 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -2.89 Total: -103.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.46 kcal Total: -59.56 4.68 -54.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.493 kcal (2) G-P(sol) polarization free energy of solvation -59.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds