Wall clock time and date at job start Tue Mar 31 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.38806 * 120.00009 * 84.72205 * 4 2 1 6 6 C 1.40081 * 120.75836 * 359.72045 * 5 4 2 7 7 N 1.31654 * 119.13568 * 179.73522 * 6 5 4 8 8 C 1.33602 * 120.79540 * 0.57571 * 7 6 5 9 9 C 1.41143 * 119.17411 * 179.69945 * 8 7 6 10 10 H 1.08001 * 119.99596 * 179.97438 * 9 8 7 11 11 C 1.40043 * 120.00237 * 359.97438 * 9 8 7 12 12 N 1.30724 * 119.99606 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47007 * 90.00159 * 13 11 9 15 15 H 1.48497 * 109.47322 * 210.00159 * 13 11 9 16 16 H 1.48499 * 109.47160 * 330.00247 * 13 11 9 17 17 N 1.33607 * 121.65224 * 359.67436 * 8 7 6 18 18 C 1.31657 * 120.79136 * 0.02577 * 17 8 7 19 19 C 1.50694 * 109.47453 * 120.00389 * 2 1 3 20 20 C 1.38382 * 119.92574 * 79.71671 * 19 2 1 21 21 C 1.38340 * 120.30874 * 179.76551 * 20 19 2 22 22 C 1.37976 * 120.14644 * 0.51976 * 21 20 19 23 23 C 1.39606 * 119.84825 * 359.73978 * 22 21 20 24 24 C 1.43201 * 120.15369 * 179.97438 * 23 22 21 25 25 N 5.95824 * 111.52036 * 82.68062 * 2 1 3 26 26 C 1.37927 * 119.92368 * 260.00129 * 19 2 1 27 27 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 28 28 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 29 29 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 31 31 H 1.07997 * 120.43285 * 0.02970 * 6 5 4 32 32 H 0.97004 * 119.99830 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.42877 * 180.02562 * 18 17 8 34 34 H 1.07999 * 119.84447 * 0.02562 * 20 19 2 35 35 H 1.08000 * 119.92711 * 180.26055 * 21 20 19 36 36 H 1.08002 * 120.07226 * 179.72124 * 22 21 20 37 37 H 1.08001 * 120.07834 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1454 0.0006 -2.3933 6 6 1.8058 1.3570 -2.4769 7 7 1.9438 1.9826 -3.6271 8 6 2.3903 1.3365 -4.7079 9 6 2.5191 2.0392 -5.9252 10 1 2.8792 1.5301 -6.8070 11 6 2.1801 3.3964 -5.9896 12 7 1.7448 4.0127 -4.9220 13 14 2.3513 4.3265 -7.6005 14 1 1.0824 4.2286 -8.3658 15 1 2.6507 5.7534 -7.3188 16 1 3.4568 3.7367 -8.3975 17 7 2.7185 0.0421 -4.6652 18 6 2.6107 -0.6440 -3.5467 19 6 2.0323 -0.7104 1.2303 20 6 2.0607 -2.0935 1.2657 21 6 2.5248 -2.7538 2.3892 22 6 2.9530 -2.0363 3.4872 23 6 2.9222 -0.6408 3.4604 24 6 3.3646 0.1103 4.5965 25 7 3.7156 0.7062 5.4977 26 6 2.4574 0.0193 2.3209 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 -1.1527 31 1 1.4401 1.8839 -1.6081 32 1 1.5103 4.9529 -4.9665 33 1 2.8780 -1.6900 -3.5187 34 1 1.7227 -2.6600 0.4106 35 1 2.5482 -3.8334 2.4086 36 1 3.3110 -2.5531 4.3654 37 1 2.4309 1.0986 2.2936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167710699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:36 Heat of formation + Delta-G solvation = 107.950100 kcal Electronic energy + Delta-G solvation = -21517.028403 eV Core-core repulsion = 18259.584697 eV Total energy + Delta-G solvation = -3257.443706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07796 -38.95682 -37.00114 -35.97759 -33.62728 -32.05953 -31.75713 -31.56735 -29.53403 -28.41349 -25.49646 -24.44263 -23.39730 -23.05260 -21.66803 -20.78893 -18.46754 -17.81753 -16.87310 -16.39479 -16.13492 -15.24794 -15.10965 -14.57351 -14.38014 -14.28533 -14.18280 -13.65550 -13.51601 -13.31913 -12.98765 -12.89954 -12.63497 -12.34918 -12.20690 -12.02198 -11.75018 -11.40701 -11.23237 -11.19170 -10.89390 -10.56968 -10.20532 -9.94495 -9.42506 -9.26354 -9.21009 -9.06106 -8.92280 -7.27559 -6.82538 -6.42051 -4.38927 0.50014 1.00887 2.41321 2.68732 2.73021 2.90260 3.12499 3.16140 3.20009 3.56074 3.60553 3.98517 4.13119 4.44225 4.55914 4.74691 4.76038 4.94932 5.12398 5.22185 5.45493 5.51576 5.60498 5.73774 5.80026 5.90240 5.95979 5.97154 5.98770 6.02730 6.22503 6.28151 6.36547 6.45276 6.52593 7.07079 7.14261 7.22489 7.36042 8.08580 8.26382 8.44744 8.55750 8.73512 9.20360 10.22789 10.38477 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.003026 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.952030 B = 9251.320488 C = 9817.340070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.198 3.802 3 H 0.083 0.917 4 N -0.744 5.744 5 C -0.041 4.041 6 C 0.102 3.898 7 N -0.476 5.476 8 C 0.370 3.630 9 C -0.413 4.413 10 H 0.088 0.912 11 C 0.068 3.932 12 N -0.725 5.725 13 Si 0.914 3.086 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.261 1.261 17 N -0.567 5.567 18 C 0.105 3.895 19 C -0.077 4.077 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.076 4.076 23 C -0.030 4.030 24 C 0.257 3.743 25 N -0.421 5.421 26 C -0.062 4.062 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.384 0.616 31 H 0.126 0.874 32 H 0.271 0.729 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 -9.945 12.952 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.091 3.909 3 H 0.101 0.899 4 N -0.382 5.382 5 C -0.145 4.145 6 C -0.075 4.075 7 N -0.193 5.193 8 C 0.129 3.871 9 C -0.450 4.450 10 H 0.107 0.893 11 C -0.157 4.157 12 N -0.348 5.348 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.185 1.185 17 N -0.286 5.286 18 C -0.070 4.070 19 C -0.078 4.078 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.097 4.097 23 C -0.033 4.033 24 C -0.058 4.058 25 N -0.096 5.096 26 C -0.083 4.083 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.280 -8.090 13.565 15.846 hybrid contribution -0.112 -0.671 0.007 0.680 sum -1.392 -8.761 13.572 16.214 Atomic orbital electron populations 1.22315 0.95504 1.02202 1.02238 1.19491 0.93316 0.96090 0.82014 0.89913 1.43630 1.77613 1.10939 1.06007 1.19129 1.12233 0.95194 0.87951 1.22712 0.98439 0.89226 0.97138 1.69281 1.16167 1.36107 0.97729 1.19798 0.90052 0.84803 0.92441 1.19098 1.37870 0.93470 0.94514 0.89347 1.25998 0.93789 0.97994 0.97871 1.70138 1.26437 1.10138 1.28126 0.86225 0.79660 0.78534 0.81767 1.19467 1.20232 1.18516 1.68558 1.23445 1.10076 1.26536 1.22169 0.98442 0.98356 0.87996 1.20065 0.98256 0.93957 0.95552 1.21249 0.96670 0.93944 0.98069 1.21079 0.99225 1.00365 0.92898 1.21147 0.97860 0.91661 0.99015 1.15945 1.05330 0.92113 0.89925 1.25736 0.93548 0.93457 0.93049 1.81255 1.09166 1.08435 1.10790 1.21074 0.95669 1.00482 0.91054 0.92410 0.91391 0.92556 0.78138 0.85656 0.91741 0.85724 0.85119 0.84882 0.85168 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.41 37.16 0.35 -1.52 16 2 C 0.20 2.39 2.47 -69.08 -0.17 2.22 16 3 H 0.08 1.10 6.41 -51.93 -0.33 0.76 16 4 N -0.74 -10.74 5.17 -52.89 -0.27 -11.01 16 5 C -0.04 -0.80 6.70 -83.32 -0.56 -1.36 16 6 C 0.10 2.29 10.09 -16.94 -0.17 2.12 16 7 N -0.48 -12.85 7.84 -12.49 -0.10 -12.95 16 8 C 0.37 10.33 7.35 -158.22 -1.16 9.17 16 9 C -0.41 -11.38 9.35 -37.80 -0.35 -11.74 16 10 H 0.09 2.36 7.85 -52.49 -0.41 1.95 16 11 C 0.07 1.75 5.50 -17.35 -0.10 1.66 16 12 N -0.72 -19.18 11.41 55.55 0.63 -18.55 16 13 Si 0.91 18.83 29.56 -169.99 -5.02 13.80 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 17 N -0.57 -14.71 10.34 -12.49 -0.13 -14.84 16 18 C 0.10 2.26 11.20 -16.94 -0.19 2.07 16 19 C -0.08 -0.76 4.95 -104.69 -0.52 -1.27 16 20 C -0.08 -0.65 9.04 -39.49 -0.36 -1.01 16 21 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 22 C -0.08 -0.55 9.76 -39.17 -0.38 -0.93 16 23 C -0.03 -0.27 5.73 -106.93 -0.61 -0.88 16 24 C 0.26 2.77 15.33 -22.48 -0.34 2.43 16 25 N -0.42 -5.51 18.54 41.83 0.78 -4.73 16 26 C -0.06 -0.58 9.37 -39.17 -0.37 -0.95 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.38 4.74 6.90 -40.82 -0.28 4.46 16 31 H 0.13 2.49 6.28 -52.49 -0.33 2.16 16 32 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 33 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.13 0.93 6.92 -52.49 -0.36 0.57 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.13 1.16 8.03 -52.49 -0.42 0.74 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -31.43 329.31 -8.27 -39.70 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.79 Total: 4.79 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -5.33 Total: -1.18 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.91 Total: -62.08 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.43 -8.27 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167710699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.652 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds