Wall clock time and date at job start Tue Mar 31 2020 07:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.38806 * 120.00009 * 84.72205 * 4 2 1 6 6 C 1.40081 * 120.75836 * 359.72045 * 5 4 2 7 7 N 1.31654 * 119.13568 * 179.73522 * 6 5 4 8 8 C 1.33602 * 120.79540 * 0.57571 * 7 6 5 9 9 C 1.41143 * 119.17411 * 179.69945 * 8 7 6 10 10 H 1.08001 * 119.99596 * 179.97438 * 9 8 7 11 11 C 1.40043 * 120.00237 * 359.97438 * 9 8 7 12 12 N 1.30724 * 119.99606 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47007 * 90.00159 * 13 11 9 15 15 H 1.48497 * 109.47322 * 210.00159 * 13 11 9 16 16 H 1.48499 * 109.47160 * 330.00247 * 13 11 9 17 17 N 1.33607 * 121.65224 * 359.67436 * 8 7 6 18 18 C 1.31657 * 120.79136 * 0.02577 * 17 8 7 19 19 C 1.50694 * 109.47453 * 120.00389 * 2 1 3 20 20 C 1.38382 * 119.92574 * 79.71671 * 19 2 1 21 21 C 1.38340 * 120.30874 * 179.76551 * 20 19 2 22 22 C 1.37976 * 120.14644 * 0.51976 * 21 20 19 23 23 C 1.39606 * 119.84825 * 359.73978 * 22 21 20 24 24 C 1.43201 * 120.15369 * 179.97438 * 23 22 21 25 25 N 5.95824 * 111.52036 * 82.68062 * 2 1 3 26 26 C 1.37927 * 119.92368 * 260.00129 * 19 2 1 27 27 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 28 28 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 29 29 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 31 31 H 1.07997 * 120.43285 * 0.02970 * 6 5 4 32 32 H 0.97004 * 119.99830 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.42877 * 180.02562 * 18 17 8 34 34 H 1.07999 * 119.84447 * 0.02562 * 20 19 2 35 35 H 1.08000 * 119.92711 * 180.26055 * 21 20 19 36 36 H 1.08002 * 120.07226 * 179.72124 * 22 21 20 37 37 H 1.08001 * 120.07834 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1454 0.0006 -2.3933 6 6 1.8058 1.3570 -2.4769 7 7 1.9438 1.9826 -3.6271 8 6 2.3903 1.3365 -4.7079 9 6 2.5191 2.0392 -5.9252 10 1 2.8792 1.5301 -6.8070 11 6 2.1801 3.3964 -5.9896 12 7 1.7448 4.0127 -4.9220 13 14 2.3513 4.3265 -7.6005 14 1 1.0824 4.2286 -8.3658 15 1 2.6507 5.7534 -7.3188 16 1 3.4568 3.7367 -8.3975 17 7 2.7185 0.0421 -4.6652 18 6 2.6107 -0.6440 -3.5467 19 6 2.0323 -0.7104 1.2303 20 6 2.0607 -2.0935 1.2657 21 6 2.5248 -2.7538 2.3892 22 6 2.9530 -2.0363 3.4872 23 6 2.9222 -0.6408 3.4604 24 6 3.3646 0.1103 4.5965 25 7 3.7156 0.7062 5.4977 26 6 2.4574 0.0193 2.3209 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 -1.1527 31 1 1.4401 1.8839 -1.6081 32 1 1.5103 4.9529 -4.9665 33 1 2.8780 -1.6900 -3.5187 34 1 1.7227 -2.6600 0.4106 35 1 2.5482 -3.8334 2.4086 36 1 3.3110 -2.5531 4.3654 37 1 2.4309 1.0986 2.2936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167710699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:35 Heat of formation + Delta-G solvation = 89.251827 kcal Electronic energy + Delta-G solvation = -21517.839221 eV Core-core repulsion = 18259.584697 eV Total energy + Delta-G solvation = -3258.254524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07677 -40.47933 -38.04140 -37.08470 -35.38950 -33.62104 -33.31940 -32.26085 -30.68000 -29.85451 -27.19351 -25.25758 -24.72162 -24.39937 -23.01491 -21.97665 -19.70260 -19.38993 -18.10629 -17.48215 -17.21761 -16.90359 -16.27530 -16.02090 -15.57481 -15.27562 -15.14280 -15.00668 -14.58907 -14.33530 -14.23801 -14.09984 -13.86710 -13.67474 -13.20307 -12.95783 -12.95307 -12.85621 -12.54726 -12.48847 -12.31685 -11.92011 -11.73519 -11.50536 -11.22049 -11.09587 -10.71800 -9.90809 -9.77106 -9.16537 -8.45672 -8.27649 -6.28534 -0.18643 0.36098 0.92715 1.09132 1.44422 1.55518 1.57217 1.59549 1.92224 2.28848 2.70985 2.87056 2.88918 2.99458 3.63845 3.93161 4.03659 4.06868 4.14507 4.17618 4.29360 4.32971 4.39865 4.46699 4.58478 4.72708 4.78186 4.93377 4.99307 5.04947 5.22006 5.30308 5.37253 5.38248 5.43671 5.50339 5.67196 5.88254 6.27777 6.40556 6.56375 6.64391 6.83796 7.14122 7.39013 8.35640 8.54365 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.003026 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.952030 B = 9251.320488 C = 9817.340070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.197 3.803 3 H 0.068 0.932 4 N -0.728 5.728 5 C 0.001 3.999 6 C 0.076 3.924 7 N -0.509 5.509 8 C 0.339 3.661 9 C -0.459 4.459 10 H 0.080 0.920 11 C 0.026 3.974 12 N -0.764 5.764 13 Si 0.991 3.009 14 H -0.262 1.262 15 H -0.266 1.266 16 H -0.260 1.260 17 N -0.590 5.590 18 C 0.086 3.914 19 C -0.089 4.089 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.065 4.065 23 C -0.041 4.041 24 C 0.279 3.721 25 N -0.469 5.469 26 C -0.066 4.066 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.401 0.599 31 H 0.145 0.855 32 H 0.277 0.723 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 -12.191 14.192 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.091 3.909 3 H 0.086 0.914 4 N -0.365 5.365 5 C -0.105 4.105 6 C -0.099 4.099 7 N -0.226 5.226 8 C 0.095 3.905 9 C -0.496 4.496 10 H 0.098 0.902 11 C -0.195 4.195 12 N -0.389 5.389 13 Si 0.811 3.189 14 H -0.187 1.187 15 H -0.191 1.191 16 H -0.184 1.184 17 N -0.309 5.309 18 C -0.088 4.088 19 C -0.090 4.090 20 C -0.096 4.096 21 C -0.126 4.126 22 C -0.085 4.085 23 C -0.045 4.045 24 C -0.035 4.035 25 N -0.145 5.145 26 C -0.087 4.087 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.238 0.762 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.406 -10.398 14.899 18.223 hybrid contribution -0.097 -0.240 -0.105 0.279 sum -1.503 -10.638 14.794 18.284 Atomic orbital electron populations 1.22234 0.94730 1.02912 1.01757 1.19547 0.93802 0.95569 0.82008 0.91360 1.43693 1.76240 1.11603 1.04950 1.19093 1.07883 0.94221 0.89327 1.23084 0.99362 0.90761 0.96740 1.69185 1.17144 1.37463 0.98773 1.20068 0.91543 0.85777 0.93126 1.19331 1.40658 0.95022 0.94635 0.90166 1.26855 0.92841 0.98121 1.01637 1.70220 1.27681 1.10672 1.30286 0.85081 0.79692 0.77186 0.76892 1.18700 1.19052 1.18362 1.68531 1.23930 1.09758 1.28678 1.22822 0.98523 0.99940 0.87508 1.19747 1.00122 0.94704 0.94448 1.21464 0.95943 0.93113 0.99114 1.21406 0.97615 1.01904 0.91689 1.21476 0.96267 0.90753 0.99999 1.15986 1.06450 0.92887 0.89143 1.25997 0.92308 0.92529 0.92671 1.81276 1.11031 1.09776 1.12383 1.21064 0.95762 1.00637 0.91264 0.90606 0.94186 0.91210 0.76241 0.83818 0.91198 0.81781 0.83779 0.81658 0.82936 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.41 71.98 0.68 -2.63 16 2 C 0.20 4.36 2.47 44.24 0.11 4.47 16 3 H 0.07 1.75 6.41 -2.38 -0.02 1.73 16 4 N -0.73 -19.17 5.17 -321.24 -1.66 -20.83 16 5 C 0.00 0.04 6.70 38.93 0.26 0.30 16 6 C 0.08 3.46 10.09 85.17 0.86 4.32 16 7 N -0.51 -28.43 7.84 -193.43 -1.52 -29.95 16 8 C 0.34 19.65 7.35 134.95 0.99 20.65 16 9 C -0.46 -26.52 9.35 23.42 0.22 -26.30 16 10 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 11 C 0.03 1.40 5.50 85.30 0.47 1.87 16 12 N -0.76 -41.94 11.41 21.84 0.25 -41.70 16 13 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 14 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 15 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 N -0.59 -31.15 10.34 -193.42 -2.00 -33.15 16 18 C 0.09 3.62 11.20 85.17 0.95 4.57 16 19 C -0.09 -1.49 4.95 -19.91 -0.10 -1.59 16 20 C -0.08 -0.93 9.04 22.33 0.20 -0.73 16 21 C -0.11 -0.92 10.03 22.23 0.22 -0.70 16 22 C -0.06 -0.67 9.76 22.54 0.22 -0.45 16 23 C -0.04 -0.64 5.73 -21.36 -0.12 -0.76 16 24 C 0.28 5.66 15.33 88.33 1.35 7.01 16 25 N -0.47 -12.03 18.54 19.00 0.35 -11.68 16 26 C -0.07 -1.11 9.37 22.54 0.21 -0.90 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.07 7.70 -2.38 -0.02 1.05 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.40 8.34 6.90 -92.70 -0.64 7.70 16 31 H 0.14 5.81 6.28 -2.91 -0.02 5.79 16 32 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 33 H 0.17 5.46 8.06 -2.91 -0.02 5.43 16 34 H 0.14 1.34 6.92 -2.91 -0.02 1.32 16 35 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.13 2.19 8.03 -2.91 -0.02 2.16 16 Total: -1.00 -72.54 329.31 4.47 -68.08 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.48 Total: 18.35 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.53 Total: 9.15 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -4.58 Total: -137.30 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -72.54 4.47 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167710699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.330 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds