Wall clock time and date at job start Tue Mar 31 2020 06:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47106 * 2 1 4 4 N 1.46901 * 109.46875 * 119.99282 * 2 1 3 5 5 C 1.47965 * 111.00214 * 180.02562 * 4 2 1 6 6 C 1.53932 * 86.17889 * 222.41893 * 5 4 2 7 7 N 1.46497 * 113.73398 * 138.07774 * 6 5 4 8 8 C 1.38748 * 120.00097 * 156.89423 * 7 6 5 9 9 C 1.38678 * 120.28744 * 359.97438 * 8 7 6 10 10 C 1.38316 * 120.01827 * 180.02562 * 9 8 7 11 11 Cl 1.73601 * 119.70270 * 179.97438 * 10 9 8 12 12 C 1.39054 * 120.59440 * 0.02562 * 10 9 8 13 13 C 1.36413 * 120.57728 * 359.95986 * 12 10 9 14 14 C 1.40746 * 119.96293 * 0.04017 * 13 12 10 15 15 C 1.41017 * 120.29140 * 180.25478 * 14 13 12 16 16 H 1.07994 * 120.00190 * 153.45689 * 15 14 13 17 17 C 1.39914 * 119.99757 * 333.45667 * 15 14 13 18 18 N 1.30899 * 120.00062 * 343.97697 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 163.98300 * 17 15 14 20 20 H 1.48502 * 109.47104 * 59.99879 * 19 17 15 21 21 H 1.48498 * 109.47220 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46913 * 299.99584 * 19 17 15 23 23 C 1.48188 * 111.07206 * 80.56642 * 4 2 1 24 24 H 1.08996 * 109.47122 * 300.00735 * 1 2 3 25 25 H 1.09003 * 109.46507 * 60.00341 * 1 2 3 26 26 H 1.08992 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47611 * 239.99455 * 2 1 3 28 28 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46448 * 299.99032 * 3 2 1 30 30 H 1.08994 * 109.47330 * 59.99283 * 3 2 1 31 31 H 1.09002 * 113.75897 * 108.09778 * 5 4 2 32 32 H 1.08997 * 113.75221 * 336.73731 * 5 4 2 33 33 H 1.09000 * 113.73321 * 269.25334 * 6 5 4 34 34 H 0.96998 * 120.00369 * 336.89905 * 7 6 5 35 35 H 1.08005 * 119.99022 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.71226 * 180.02562 * 12 10 9 37 37 H 1.07994 * 120.01550 * 180.02562 * 13 12 10 38 38 H 0.96995 * 119.99812 * 179.97438 * 18 17 15 39 39 H 1.09004 * 113.75561 * 23.24259 * 23 4 2 40 40 H 1.08995 * 113.82520 * 251.81000 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4987 -0.7116 1.2341 6 6 3.3663 -2.1743 1.6953 7 7 4.3260 -3.0816 1.0613 8 6 4.6656 -4.2756 1.6811 9 6 4.1007 -4.6158 2.9011 10 6 4.4436 -5.8072 3.5143 11 17 3.7319 -6.2246 5.0417 12 6 5.3542 -6.6731 2.9188 13 6 5.9244 -6.3629 1.7190 14 6 5.5925 -5.1567 1.0740 15 6 6.1737 -4.8316 -0.1690 16 1 5.6520 -4.1814 -0.8555 17 6 7.4264 -5.3513 -0.5129 18 7 8.1958 -5.8697 0.4106 19 14 8.0009 -5.3054 -2.2897 20 1 8.0569 -3.8964 -2.7556 21 1 9.3522 -5.9131 -2.3889 22 1 7.0506 -6.0696 -3.1371 23 6 1.9835 -2.1626 1.0181 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.9291 -0.0510 1.9869 32 1 3.9623 -0.6004 0.2539 33 1 3.3232 -2.2906 2.7782 34 1 4.7240 -2.8477 0.2083 35 1 3.3933 -3.9498 3.3729 36 1 5.6114 -7.5999 3.4099 37 1 6.6301 -7.0423 1.2645 38 1 9.0641 -6.2303 0.1721 39 1 2.0030 -2.4769 -0.0254 40 1 1.2059 -2.6589 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168317004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:59 Heat of formation + Delta-G solvation = 41.510620 kcal Electronic energy + Delta-G solvation = -21220.423688 eV Core-core repulsion = 18061.206444 eV Total energy + Delta-G solvation = -3159.217244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09345 -37.93040 -35.47507 -34.76340 -33.54018 -32.62960 -29.59848 -28.22414 -27.76916 -25.84017 -25.37324 -24.89921 -21.67067 -20.70013 -19.89634 -19.42502 -17.40404 -16.52317 -16.22271 -15.63680 -15.00442 -14.63477 -14.39175 -14.12541 -13.77588 -13.05932 -12.88236 -12.76577 -12.63318 -12.58404 -12.24001 -12.07965 -11.95040 -11.67200 -11.51317 -11.35376 -11.17376 -11.15665 -10.86631 -10.72054 -10.38121 -10.29478 -10.06132 -9.75292 -9.64019 -9.19485 -8.89125 -8.75347 -7.41479 -6.85961 -6.45018 -4.28149 2.63282 3.00412 3.02552 3.03070 3.10711 3.44693 3.87046 3.87995 4.43715 4.55173 4.72359 4.89035 4.94587 5.06055 5.26107 5.37452 5.51251 5.54140 5.58451 5.70032 5.71689 5.76749 5.91100 5.98263 6.00792 6.08900 6.17682 6.32029 6.41316 6.42223 6.77912 6.91992 7.09393 7.12765 7.26071 7.35870 7.65383 7.87791 7.98813 8.24212 8.55389 8.68434 8.82847 8.93370 10.15272 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.005565 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.731484 B = 5030.378051 C = 7459.826447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.043 3.957 3 C -0.146 4.146 4 N -0.475 5.475 5 C -0.006 4.006 6 C 0.140 3.860 7 N -0.733 5.733 8 C 0.119 3.881 9 C -0.162 4.162 10 C -0.104 4.104 11 Cl -0.134 7.134 12 C -0.125 4.125 13 C -0.135 4.135 14 C 0.075 3.925 15 C -0.460 4.460 16 H 0.073 0.927 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.018 4.018 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.397 0.603 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.281 0.719 39 H 0.070 0.930 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 8.140 -1.846 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.203 4.203 4 N -0.199 5.199 5 C -0.136 4.136 6 C 0.031 3.969 7 N -0.366 5.366 8 C 0.020 3.980 9 C -0.186 4.186 10 C -0.132 4.132 11 Cl -0.106 7.106 12 C -0.146 4.146 13 C -0.156 4.156 14 C 0.070 3.930 15 C -0.490 4.490 16 H 0.091 0.909 17 C -0.141 4.141 18 N -0.420 5.420 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.233 0.767 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.998 8.384 -1.051 11.635 hybrid contribution 0.833 -0.209 -1.715 1.918 sum -7.165 8.175 -2.767 11.217 Atomic orbital electron populations 1.21716 0.94255 1.01927 1.01691 1.22157 0.96375 0.95638 0.92466 1.21848 1.01113 0.95395 1.01987 1.68538 1.10040 1.06945 1.34356 1.24324 0.90035 0.97900 1.01357 1.22517 0.87825 0.88001 0.98575 1.43938 1.48722 1.19203 1.24727 1.17690 1.00360 0.87379 0.92567 1.19855 1.05219 0.97129 0.96354 1.19942 1.05425 0.99114 0.88720 1.98222 1.84378 1.93941 1.34091 1.20193 0.98615 0.98548 0.97206 1.20733 1.02532 0.97023 0.95342 1.17302 0.91555 0.90535 0.93619 1.19121 1.01712 1.27007 1.01165 0.90927 1.25794 0.96189 0.93281 0.98806 1.69815 1.08848 1.29330 1.34001 0.86404 0.78259 0.79439 0.82822 1.19230 1.20337 1.18943 1.24704 1.00168 0.89025 1.00947 0.91976 0.92644 0.92735 0.93621 0.92581 0.92440 0.91918 0.89231 0.91194 0.87583 0.76683 0.88052 0.88681 0.85726 0.90797 0.91157 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.37 37.16 0.35 -1.05 16 2 C 0.04 0.48 2.33 -67.71 -0.16 0.32 16 3 C -0.15 -1.44 9.09 37.16 0.34 -1.10 16 4 N -0.47 -6.14 5.98 -230.20 -1.38 -7.52 16 5 C -0.01 -0.09 6.48 -2.76 -0.02 -0.10 16 6 C 0.14 2.16 4.18 -69.61 -0.29 1.87 16 7 N -0.73 -13.68 5.45 -52.87 -0.29 -13.96 16 8 C 0.12 2.66 6.68 -83.30 -0.56 2.10 16 9 C -0.16 -3.51 9.02 -39.39 -0.36 -3.86 16 10 C -0.10 -2.31 6.33 -39.25 -0.25 -2.56 16 11 Cl -0.13 -2.61 28.94 -51.86 -1.50 -4.11 16 12 C -0.13 -2.90 9.74 -39.94 -0.39 -3.29 16 13 C -0.14 -3.35 8.62 -39.29 -0.34 -3.69 16 14 C 0.07 1.84 5.57 -106.63 -0.59 1.24 16 15 C -0.46 -11.14 8.48 -37.90 -0.32 -11.46 16 16 H 0.07 1.66 6.72 -52.49 -0.35 1.30 16 17 C 0.08 1.82 5.16 -17.32 -0.09 1.73 16 18 N -0.79 -19.61 10.98 55.55 0.61 -19.00 16 19 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 23 C -0.02 -0.25 7.42 -2.61 -0.02 -0.27 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 27 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16 28 H 0.06 0.56 7.02 -51.93 -0.36 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.90 7.62 -51.93 -0.40 0.51 16 33 H 0.11 1.73 6.21 -51.93 -0.32 1.41 16 34 H 0.40 7.36 6.96 -40.82 -0.28 7.08 16 35 H 0.10 2.02 6.08 -52.48 -0.32 1.70 16 36 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.13 3.19 6.23 -52.49 -0.33 2.86 16 38 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 39 H 0.07 1.01 7.63 -51.93 -0.40 0.61 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -24.90 335.95 -10.88 -35.78 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.66 Total: 11.09 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.69 Total: -20.11 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -1.06 Total: -40.48 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -1.50 Total: -4.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -24.90 -10.88 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168317004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.287 kcal (2) G-P(sol) polarization free energy of solvation -24.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds