Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47106 * 2 1 4 4 N 1.46901 * 109.46875 * 119.99282 * 2 1 3 5 5 C 1.47965 * 111.00214 * 180.02562 * 4 2 1 6 6 C 1.53932 * 86.17889 * 222.41893 * 5 4 2 7 7 N 1.46497 * 113.73398 * 138.07774 * 6 5 4 8 8 C 1.38748 * 120.00097 * 156.89423 * 7 6 5 9 9 C 1.38678 * 120.28744 * 359.97438 * 8 7 6 10 10 C 1.38316 * 120.01827 * 180.02562 * 9 8 7 11 11 Cl 1.73601 * 119.70270 * 179.97438 * 10 9 8 12 12 C 1.39054 * 120.59440 * 0.02562 * 10 9 8 13 13 C 1.36413 * 120.57728 * 359.95986 * 12 10 9 14 14 C 1.40746 * 119.96293 * 0.04017 * 13 12 10 15 15 C 1.41017 * 120.29140 * 180.25478 * 14 13 12 16 16 H 1.07994 * 120.00190 * 153.45689 * 15 14 13 17 17 C 1.39914 * 119.99757 * 333.45667 * 15 14 13 18 18 N 1.30899 * 120.00062 * 343.97697 * 17 15 14 19 19 Si 1.86800 * 119.99896 * 163.98300 * 17 15 14 20 20 H 1.48502 * 109.47104 * 59.99879 * 19 17 15 21 21 H 1.48498 * 109.47220 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46913 * 299.99584 * 19 17 15 23 23 C 1.48188 * 111.07206 * 80.56642 * 4 2 1 24 24 H 1.08996 * 109.47122 * 300.00735 * 1 2 3 25 25 H 1.09003 * 109.46507 * 60.00341 * 1 2 3 26 26 H 1.08992 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47611 * 239.99455 * 2 1 3 28 28 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46448 * 299.99032 * 3 2 1 30 30 H 1.08994 * 109.47330 * 59.99283 * 3 2 1 31 31 H 1.09002 * 113.75897 * 108.09778 * 5 4 2 32 32 H 1.08997 * 113.75221 * 336.73731 * 5 4 2 33 33 H 1.09000 * 113.73321 * 269.25334 * 6 5 4 34 34 H 0.96998 * 120.00369 * 336.89905 * 7 6 5 35 35 H 1.08005 * 119.99022 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.71226 * 180.02562 * 12 10 9 37 37 H 1.07994 * 120.01550 * 180.02562 * 13 12 10 38 38 H 0.96995 * 119.99812 * 179.97438 * 18 17 15 39 39 H 1.09004 * 113.75561 * 23.24259 * 23 4 2 40 40 H 1.08995 * 113.82520 * 251.81000 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4987 -0.7116 1.2341 6 6 3.3663 -2.1743 1.6953 7 7 4.3260 -3.0816 1.0613 8 6 4.6656 -4.2756 1.6811 9 6 4.1007 -4.6158 2.9011 10 6 4.4436 -5.8072 3.5143 11 17 3.7319 -6.2246 5.0417 12 6 5.3542 -6.6731 2.9188 13 6 5.9244 -6.3629 1.7190 14 6 5.5925 -5.1567 1.0740 15 6 6.1737 -4.8316 -0.1690 16 1 5.6520 -4.1814 -0.8555 17 6 7.4264 -5.3513 -0.5129 18 7 8.1958 -5.8697 0.4106 19 14 8.0009 -5.3054 -2.2897 20 1 8.0569 -3.8964 -2.7556 21 1 9.3522 -5.9131 -2.3889 22 1 7.0506 -6.0696 -3.1371 23 6 1.9835 -2.1626 1.0181 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.9291 -0.0510 1.9869 32 1 3.9623 -0.6004 0.2539 33 1 3.3232 -2.2906 2.7782 34 1 4.7240 -2.8477 0.2083 35 1 3.3933 -3.9498 3.3729 36 1 5.6114 -7.5999 3.4099 37 1 6.6301 -7.0423 1.2645 38 1 9.0641 -6.2303 0.1721 39 1 2.0030 -2.4769 -0.0254 40 1 1.2059 -2.6589 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168317004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = 28.342973 kcal Electronic energy + Delta-G solvation = -21220.994680 eV Core-core repulsion = 18061.206444 eV Total energy + Delta-G solvation = -3159.788236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24701 -39.60103 -37.11202 -36.07281 -35.24348 -33.94233 -31.37365 -29.82223 -28.63558 -27.25810 -26.51768 -26.38578 -23.26516 -22.27382 -21.05781 -20.72941 -19.16977 -18.11727 -17.41942 -16.93822 -16.56444 -16.01562 -15.64765 -15.29918 -15.23726 -14.65939 -14.29454 -14.18429 -14.11391 -13.76050 -13.43100 -13.33640 -13.14767 -13.00048 -12.87666 -12.76656 -12.64617 -12.28145 -12.14096 -11.98949 -11.78933 -11.61242 -11.55962 -11.36048 -11.34439 -10.93594 -10.47807 -9.82665 -9.21099 -8.61651 -8.12968 -6.09638 0.87735 1.21965 1.41678 1.49927 1.53250 1.72199 2.23304 2.68885 2.78274 3.14368 3.58224 3.80658 3.89329 3.98074 4.07110 4.15867 4.42284 4.45789 4.48052 4.60947 4.68153 4.78871 4.85096 4.91480 4.91622 4.98629 5.06943 5.07526 5.13727 5.17199 5.33000 5.35172 5.48738 5.50657 5.57595 5.87678 6.06756 6.10768 6.20319 6.46862 6.81451 6.94527 7.12166 7.24236 8.41348 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.005565 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.731484 B = 5030.378051 C = 7459.826447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.038 3.962 3 C -0.142 4.142 4 N -0.475 5.475 5 C 0.004 3.996 6 C 0.129 3.871 7 N -0.728 5.728 8 C 0.126 3.874 9 C -0.171 4.171 10 C -0.105 4.105 11 Cl -0.108 7.108 12 C -0.139 4.139 13 C -0.155 4.155 14 C 0.043 3.957 15 C -0.482 4.482 16 H 0.080 0.920 17 C 0.037 3.963 18 N -0.829 5.829 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.264 1.264 23 C -0.010 4.010 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.397 0.603 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.285 0.715 39 H 0.067 0.933 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 9.702 -2.449 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.199 4.199 4 N -0.199 5.199 5 C -0.125 4.125 6 C 0.022 3.978 7 N -0.360 5.360 8 C 0.024 3.976 9 C -0.195 4.195 10 C -0.133 4.133 11 Cl -0.080 7.080 12 C -0.159 4.159 13 C -0.177 4.177 14 C 0.038 3.962 15 C -0.512 4.512 16 H 0.098 0.902 17 C -0.177 4.177 18 N -0.456 5.456 19 Si 0.797 3.203 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.033 9.981 -1.647 13.562 hybrid contribution 1.045 -0.658 -1.418 1.880 sum -7.988 9.322 -3.065 12.653 Atomic orbital electron populations 1.21697 0.93300 1.01735 1.02514 1.22268 0.97186 0.96237 0.91386 1.21823 1.00929 0.94406 1.02784 1.68566 1.09703 1.06126 1.35458 1.24264 0.90483 0.96049 1.01739 1.22737 0.88054 0.88858 0.98196 1.44033 1.48936 1.18493 1.24580 1.17830 0.99128 0.88044 0.92573 1.20054 1.05671 0.97402 0.96340 1.20102 1.04671 0.98868 0.89616 1.98222 1.83827 1.93796 1.32173 1.20295 0.99183 0.99352 0.97070 1.20683 1.03218 0.97383 0.96382 1.17615 0.92911 0.91182 0.94471 1.19367 1.02338 1.27951 1.01525 0.90250 1.26579 0.96020 0.92593 1.02547 1.69893 1.09362 1.30382 1.35937 0.85354 0.77647 0.79640 0.77693 1.18369 1.19996 1.18884 1.24570 0.98910 0.90016 1.00520 0.92054 0.90945 0.93434 0.94056 0.92832 0.90843 0.91956 0.88362 0.90699 0.88247 0.76709 0.86283 0.87751 0.87494 0.90469 0.91433 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.37 71.98 0.67 -1.75 16 2 C 0.04 0.78 2.33 44.92 0.10 0.88 16 3 C -0.14 -2.44 9.09 71.98 0.65 -1.78 16 4 N -0.47 -11.35 5.98 -882.23 -5.28 -16.63 16 5 C 0.00 0.10 6.48 86.41 0.56 0.66 16 6 C 0.13 3.84 4.18 46.57 0.19 4.04 16 7 N -0.73 -26.80 5.45 -321.17 -1.75 -28.55 16 8 C 0.13 5.59 6.68 38.98 0.26 5.85 16 9 C -0.17 -7.30 9.02 22.39 0.20 -7.09 16 10 C -0.10 -4.59 6.33 22.48 0.14 -4.45 16 11 Cl -0.11 -4.05 28.94 -2.72 -0.08 -4.13 16 12 C -0.14 -6.50 9.74 22.04 0.21 -6.28 16 13 C -0.16 -7.95 8.62 22.46 0.19 -7.76 16 14 C 0.04 2.16 5.57 -21.16 -0.12 2.04 16 15 C -0.48 -23.68 8.48 23.36 0.20 -23.48 16 16 H 0.08 3.64 6.72 -2.91 -0.02 3.62 16 17 C 0.04 1.76 5.16 85.24 0.44 2.20 16 18 N -0.83 -41.97 10.98 21.83 0.24 -41.74 16 19 Si 0.97 36.54 29.59 68.60 2.03 38.57 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 21 H -0.28 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 23 C -0.01 -0.25 7.42 86.38 0.64 0.39 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.91 7.91 -2.39 -0.02 0.89 16 27 H 0.04 0.89 7.63 -2.39 -0.02 0.87 16 28 H 0.05 0.94 7.02 -2.39 -0.02 0.93 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.79 7.62 -2.39 -0.02 1.77 16 33 H 0.10 3.12 6.21 -2.39 -0.01 3.11 16 34 H 0.40 14.54 6.96 -92.71 -0.64 13.90 16 35 H 0.12 4.59 6.08 -2.91 -0.02 4.57 16 36 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 5.75 6.23 -2.91 -0.02 5.73 16 38 H 0.28 13.27 8.30 -92.71 -0.77 12.50 16 39 H 0.07 1.85 7.63 -2.39 -0.02 1.83 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -52.99 335.95 -0.07 -53.06 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.41 Total: 35.96 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.36 Total: -36.54 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -6.79 Total: -86.92 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 17 Polarization: -4.05 SS G_CDS: -0.08 Total: -4.13 kcal Total: -52.99 -0.07 -53.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168317004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.401 kcal (2) G-P(sol) polarization free energy of solvation -52.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds