Wall clock time and date at job start Tue Mar 31 2020 07:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 C 1.53000 * 109.47325 * 240.00010 * 2 1 3 5 5 C 1.53000 * 109.47142 * 65.04027 * 4 2 1 6 6 C 1.50704 * 109.47025 * 174.97571 * 5 4 2 7 7 H 1.07998 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99975 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99651 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47376 * 59.99843 * 10 8 6 12 12 H 1.48509 * 109.46819 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47090 * 299.99458 * 10 8 6 14 14 N 1.46904 * 109.47037 * 120.00161 * 2 1 3 15 15 C 1.47164 * 110.99645 * 291.50586 * 14 2 1 16 16 C 1.52882 * 108.54829 * 165.33680 * 15 14 2 17 17 C 1.50817 * 109.95149 * 50.61153 * 16 15 14 18 18 N 1.32465 * 118.28927 * 163.07248 * 17 16 15 19 19 C 1.31600 * 122.20257 * 179.82551 * 18 17 16 20 20 C 1.38362 * 120.66186 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.55011 * 180.02562 * 20 19 18 22 22 C 1.38595 * 118.90085 * 0.07393 * 20 19 18 23 23 C 1.37790 * 121.41182 * 343.02624 * 17 16 15 24 24 C 1.46668 * 111.00129 * 168.57335 * 14 2 1 25 25 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46885 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.46714 * 60.00225 * 1 2 3 28 28 H 1.09001 * 109.47159 * 185.04592 * 4 2 1 29 29 H 1.09010 * 109.46986 * 305.04470 * 4 2 1 30 30 H 1.08997 * 109.47376 * 294.97649 * 5 4 2 31 31 H 1.09000 * 109.46970 * 54.98005 * 5 4 2 32 32 H 0.97001 * 119.99762 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.62283 * 45.62242 * 15 14 2 34 34 H 1.08997 * 109.78125 * 285.14474 * 15 14 2 35 35 H 1.09001 * 109.38655 * 170.76116 * 16 15 14 36 36 H 1.09003 * 109.39097 * 290.46048 * 16 15 14 37 37 H 1.07999 * 119.67329 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.64575 * 179.97438 * 22 20 19 39 39 H 1.08999 * 109.29837 * 295.92500 * 24 14 2 40 40 H 1.08999 * 109.30456 * 55.50882 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6362 0.0695 -2.4953 6 6 2.2425 -0.5730 -3.7163 7 1 2.8543 -1.4570 -3.6137 8 6 2.0161 -0.0321 -4.9641 9 7 1.2707 1.0442 -5.0889 10 14 2.7671 -0.8288 -6.4776 11 1 2.2759 -2.2251 -6.5973 12 1 2.3752 -0.0612 -7.6870 13 1 4.2467 -0.8336 -6.3518 14 7 2.0196 -0.6926 1.1995 15 6 1.7205 0.0819 2.4146 16 6 1.9099 -0.8268 3.6293 17 6 3.2543 -1.5066 3.5589 18 7 3.7392 -2.0546 4.6631 19 6 4.9023 -2.6698 4.6883 20 6 5.6732 -2.7686 3.5436 21 17 7.2068 -3.5814 3.5799 22 6 5.2013 -2.2071 2.3676 23 6 3.9692 -1.5640 2.3824 24 6 3.4602 -0.9516 1.1056 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.8002 -1.2052 29 1 1.6048 -1.7196 -1.2956 30 1 0.5501 0.0723 -2.5876 31 1 1.9961 1.0946 -2.4075 32 1 1.1111 1.4245 -5.9668 33 1 0.6900 0.4354 2.3789 34 1 2.3974 0.9333 2.4853 35 1 1.8532 -0.2302 4.5398 36 1 1.1231 -1.5811 3.6432 37 1 5.2587 -3.1019 5.6117 38 1 5.7800 -2.2673 1.4578 39 1 3.6502 -1.6345 0.2776 40 1 3.9842 -0.0128 0.9258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:20 Heat of formation + Delta-G solvation = 16.995134 kcal Electronic energy + Delta-G solvation = -21038.832325 eV Core-core repulsion = 17878.552009 eV Total energy + Delta-G solvation = -3160.280316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92332 -38.41779 -36.86519 -34.70167 -33.44810 -32.80290 -30.87449 -30.07473 -28.71831 -25.45271 -25.22441 -23.83846 -22.91366 -21.75706 -20.29467 -19.27451 -17.25049 -17.00154 -16.32091 -16.01356 -15.23438 -15.01125 -14.64406 -14.46234 -14.25765 -13.83161 -13.45105 -13.30801 -12.85929 -12.61385 -12.45225 -12.26857 -11.95998 -11.85695 -11.53334 -11.46075 -11.19849 -11.10997 -10.99309 -10.81086 -10.55794 -10.20095 -9.85891 -9.76322 -9.61405 -9.35709 -9.05866 -8.86205 -8.35787 -8.19839 -6.02029 -4.04227 0.70785 0.92247 1.77605 3.31780 3.36427 3.38759 3.39375 3.88984 4.01027 4.41985 4.44635 4.51654 4.58760 4.84256 5.09526 5.20106 5.21326 5.33813 5.35561 5.43650 5.54164 5.56944 5.66603 5.76938 5.81028 5.87504 5.90301 5.99369 6.25212 6.30753 6.34093 6.55560 6.65561 6.70698 7.01400 7.20372 7.31625 7.64918 7.65599 7.80087 7.97742 8.40840 9.02609 9.59921 11.09217 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.003529 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.224198 B = 7931.257526 C = 9474.140145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.109 4.109 5 C 0.024 3.976 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.528 5.528 15 C 0.045 3.955 16 C -0.062 4.062 17 C 0.145 3.855 18 N -0.474 5.474 19 C 0.112 3.888 20 C -0.094 4.094 21 Cl -0.059 7.059 22 C -0.064 4.064 23 C -0.105 4.105 24 C 0.091 3.909 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.013 0.987 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.163 0.837 38 H 0.147 0.853 39 H 0.104 0.896 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -4.496 19.511 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.058 0.942 4 C -0.146 4.146 5 C -0.014 4.014 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.253 5.253 15 C -0.083 4.083 16 C -0.100 4.100 17 C 0.010 3.990 18 N -0.183 5.183 19 C -0.048 4.048 20 C -0.123 4.123 21 Cl -0.031 7.031 22 C -0.091 4.091 23 C -0.108 4.108 24 C -0.037 4.037 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.180 0.820 38 H 0.165 0.835 39 H 0.122 0.878 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.869 -4.835 20.166 21.302 hybrid contribution 1.641 0.161 -1.736 2.394 sum 6.510 -4.674 18.430 20.097 Atomic orbital electron populations 1.21843 0.94214 1.02287 1.01292 1.21858 0.96001 0.95674 0.89154 0.94156 1.21845 0.99434 0.99716 0.93642 1.19112 0.96983 0.94889 0.90381 1.21211 1.31081 1.11965 0.91678 0.92822 1.25005 0.95289 0.95000 0.99060 1.69947 1.38470 1.21342 1.23736 0.86684 0.79631 0.79467 0.82374 1.20217 1.21295 1.20288 1.62461 1.12922 1.47082 1.02830 1.22247 1.02221 0.94247 0.89627 1.20481 0.91972 0.98872 0.98639 1.21176 0.96245 0.94044 0.87579 1.67678 1.12424 1.08979 1.29180 1.22645 0.89573 0.95677 0.96879 1.21991 0.90713 1.02708 0.96864 1.98377 1.28234 1.77714 1.98748 1.21476 0.95232 0.94674 0.97728 1.20601 0.94183 0.99116 0.96872 1.21013 0.88921 1.00018 0.93762 0.92143 0.93775 0.91027 0.93166 0.92490 0.96128 0.96886 0.92956 0.89126 0.94369 0.89417 0.88759 0.82032 0.83531 0.87795 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.96 37.16 0.33 -1.77 16 2 C 0.08 1.29 2.16 -67.71 -0.15 1.14 16 3 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 4 C -0.11 -2.12 4.17 -26.73 -0.11 -2.23 16 5 C 0.02 0.59 4.60 -27.88 -0.13 0.46 16 6 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 N -0.53 -7.35 4.55 -228.26 -1.04 -8.39 16 15 C 0.05 0.52 5.42 -3.74 -0.02 0.50 16 16 C -0.06 -0.66 6.18 -27.89 -0.17 -0.84 16 17 C 0.15 1.81 6.67 -82.43 -0.55 1.26 16 18 N -0.47 -5.88 10.22 -9.44 -0.10 -5.98 16 19 C 0.11 1.21 11.00 -17.61 -0.19 1.02 16 20 C -0.09 -1.01 6.34 -39.40 -0.25 -1.26 16 21 Cl -0.06 -0.57 29.00 -51.86 -1.50 -2.07 16 22 C -0.06 -0.73 9.60 -39.17 -0.38 -1.11 16 23 C -0.11 -1.31 5.79 -104.61 -0.61 -1.92 16 24 C 0.09 1.22 4.37 -5.21 -0.02 1.19 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 27 H 0.07 1.21 6.68 -51.93 -0.35 0.86 16 28 H 0.05 0.95 6.09 -51.93 -0.32 0.64 16 29 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.02 0.53 6.82 -51.93 -0.35 0.18 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.09 0.96 6.13 -51.93 -0.32 0.64 16 34 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.15 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.10 1.45 6.34 -51.93 -0.33 1.12 16 40 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -29.64 333.34 -10.31 -39.95 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.76 Total: -2.41 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.65 Total: -16.76 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.40 Total: -40.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.64 -10.31 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds