Wall clock time and date at job start Tue Mar 31 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47462 * 2 1 4 4 C 1.53000 * 109.47325 * 240.00010 * 2 1 3 5 5 C 1.53000 * 109.47142 * 65.04027 * 4 2 1 6 6 C 1.50704 * 109.47025 * 174.97571 * 5 4 2 7 7 H 1.07998 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99975 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99651 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47376 * 59.99843 * 10 8 6 12 12 H 1.48509 * 109.46819 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47090 * 299.99458 * 10 8 6 14 14 N 1.46904 * 109.47037 * 120.00161 * 2 1 3 15 15 C 1.47164 * 110.99645 * 291.50586 * 14 2 1 16 16 C 1.52882 * 108.54829 * 165.33680 * 15 14 2 17 17 C 1.50817 * 109.95149 * 50.61153 * 16 15 14 18 18 N 1.32465 * 118.28927 * 163.07248 * 17 16 15 19 19 C 1.31600 * 122.20257 * 179.82551 * 18 17 16 20 20 C 1.38362 * 120.66186 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.55011 * 180.02562 * 20 19 18 22 22 C 1.38595 * 118.90085 * 0.07393 * 20 19 18 23 23 C 1.37790 * 121.41182 * 343.02624 * 17 16 15 24 24 C 1.46668 * 111.00129 * 168.57335 * 14 2 1 25 25 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46885 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.46714 * 60.00225 * 1 2 3 28 28 H 1.09001 * 109.47159 * 185.04592 * 4 2 1 29 29 H 1.09010 * 109.46986 * 305.04470 * 4 2 1 30 30 H 1.08997 * 109.47376 * 294.97649 * 5 4 2 31 31 H 1.09000 * 109.46970 * 54.98005 * 5 4 2 32 32 H 0.97001 * 119.99762 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.62283 * 45.62242 * 15 14 2 34 34 H 1.08997 * 109.78125 * 285.14474 * 15 14 2 35 35 H 1.09001 * 109.38655 * 170.76116 * 16 15 14 36 36 H 1.09003 * 109.39097 * 290.46048 * 16 15 14 37 37 H 1.07999 * 119.67329 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.64575 * 179.97438 * 22 20 19 39 39 H 1.08999 * 109.29837 * 295.92500 * 24 14 2 40 40 H 1.08999 * 109.30456 * 55.50882 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6362 0.0695 -2.4953 6 6 2.2425 -0.5730 -3.7163 7 1 2.8543 -1.4570 -3.6137 8 6 2.0161 -0.0321 -4.9641 9 7 1.2707 1.0442 -5.0889 10 14 2.7671 -0.8288 -6.4776 11 1 2.2759 -2.2251 -6.5973 12 1 2.3752 -0.0612 -7.6870 13 1 4.2467 -0.8336 -6.3518 14 7 2.0196 -0.6926 1.1995 15 6 1.7205 0.0819 2.4146 16 6 1.9099 -0.8268 3.6293 17 6 3.2543 -1.5066 3.5589 18 7 3.7392 -2.0546 4.6631 19 6 4.9023 -2.6698 4.6883 20 6 5.6732 -2.7686 3.5436 21 17 7.2068 -3.5814 3.5799 22 6 5.2013 -2.2071 2.3676 23 6 3.9692 -1.5640 2.3824 24 6 3.4602 -0.9516 1.1056 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.8002 -1.2052 29 1 1.6048 -1.7196 -1.2956 30 1 0.5501 0.0723 -2.5876 31 1 1.9961 1.0946 -2.4075 32 1 1.1111 1.4245 -5.9668 33 1 0.6900 0.4354 2.3789 34 1 2.3974 0.9333 2.4853 35 1 1.8532 -0.2302 4.5398 36 1 1.1231 -1.5811 3.6432 37 1 5.2587 -3.1019 5.6117 38 1 5.7800 -2.2673 1.4578 39 1 3.6502 -1.6345 0.2776 40 1 3.9842 -0.0128 0.9258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:19 Heat of formation + Delta-G solvation = 0.274963 kcal Electronic energy + Delta-G solvation = -21039.557366 eV Core-core repulsion = 17878.552009 eV Total energy + Delta-G solvation = -3161.005357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83713 -39.53599 -37.69498 -36.17584 -34.58714 -34.34079 -32.26438 -31.03453 -30.17911 -27.16664 -26.23425 -24.99205 -23.95347 -23.25245 -21.42794 -20.62410 -18.62346 -17.99100 -17.86597 -16.93599 -16.65081 -16.14104 -16.02852 -15.78919 -15.50984 -14.84090 -14.55639 -14.25953 -14.19050 -14.08929 -13.69073 -13.51259 -13.33319 -12.97095 -12.86476 -12.73066 -12.52563 -12.45676 -12.36155 -12.22147 -12.06277 -11.59527 -11.47380 -11.23871 -10.99789 -10.74774 -10.58054 -10.50272 -9.73699 -9.31644 -8.18254 -6.28387 -0.16642 0.03533 0.95378 1.40626 1.42860 1.50678 2.41612 2.50919 2.79906 3.15190 3.16512 3.51719 3.68789 3.70135 3.86924 4.08155 4.20248 4.20353 4.33893 4.35294 4.46665 4.51433 4.61380 4.73947 4.79388 4.87843 4.88420 4.94655 4.98195 5.04341 5.12349 5.19289 5.27020 5.41373 5.45058 5.54400 5.80426 5.88613 6.06627 6.09157 6.30223 6.77241 6.88845 7.40523 8.93112 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.003529 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.224198 B = 7931.257526 C = 9474.140145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 H 0.033 0.967 4 C -0.095 4.095 5 C 0.030 3.970 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.531 5.531 15 C 0.046 3.954 16 C -0.056 4.056 17 C 0.134 3.866 18 N -0.487 5.487 19 C 0.113 3.887 20 C -0.096 4.096 21 Cl -0.048 7.048 22 C -0.068 4.068 23 C -0.118 4.118 24 C 0.094 3.906 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.000 1.000 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.103 0.897 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.187 0.813 38 H 0.156 0.844 39 H 0.093 0.907 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -5.448 20.671 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.018 4.018 3 H 0.051 0.949 4 C -0.132 4.132 5 C -0.007 4.007 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.255 5.255 15 C -0.082 4.082 16 C -0.094 4.094 17 C -0.001 4.001 18 N -0.196 5.196 19 C -0.046 4.046 20 C -0.125 4.125 21 Cl -0.019 7.019 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.034 4.034 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.204 0.796 38 H 0.174 0.826 39 H 0.111 0.889 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.643 -5.795 21.343 22.825 hybrid contribution 1.452 0.437 -2.038 2.541 sum 7.095 -5.358 19.305 21.254 Atomic orbital electron populations 1.21769 0.93442 1.02312 1.01580 1.21598 0.96550 0.94828 0.88808 0.94892 1.21606 0.99643 0.98831 0.93167 1.18979 0.95381 0.94115 0.92266 1.21688 1.31177 1.12224 0.93016 0.92447 1.25909 0.95700 0.95512 1.02450 1.70078 1.39788 1.22779 1.24569 0.85590 0.79089 0.78668 0.78252 1.19302 1.20904 1.19261 1.62417 1.13320 1.47132 1.02658 1.22333 1.02978 0.94237 0.88651 1.20482 0.91263 0.98856 0.98782 1.21429 0.96865 0.94221 0.87597 1.67730 1.13174 1.09612 1.29116 1.23080 0.88998 0.94777 0.97795 1.22031 0.91209 1.02588 0.96672 1.98383 1.27403 1.77407 1.98717 1.21641 0.95018 0.94289 0.98485 1.20527 0.94918 1.00165 0.96473 1.20926 0.88609 0.99726 0.94183 0.92212 0.90827 0.93382 0.92828 0.92946 0.98157 0.99357 0.92838 0.87847 0.94197 0.87681 0.88507 0.79618 0.82610 0.88885 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 8.96 71.98 0.64 -3.35 16 2 C 0.09 2.88 2.16 44.91 0.10 2.97 16 3 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 4 C -0.09 -3.75 4.17 30.59 0.13 -3.62 16 5 C 0.03 1.54 4.60 29.85 0.14 1.68 16 6 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 10 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 N -0.53 -14.28 4.55 -876.08 -3.99 -18.26 16 15 C 0.05 0.98 5.42 86.21 0.47 1.44 16 16 C -0.06 -1.09 6.18 29.85 0.18 -0.91 16 17 C 0.13 3.14 6.67 42.39 0.28 3.42 16 18 N -0.49 -11.18 10.22 -183.77 -1.88 -13.06 16 19 C 0.11 2.21 11.00 84.76 0.93 3.14 16 20 C -0.10 -1.91 6.34 22.38 0.14 -1.76 16 21 Cl -0.05 -0.83 29.00 -2.72 -0.08 -0.91 16 22 C -0.07 -1.46 9.60 22.53 0.22 -1.24 16 23 C -0.12 -2.83 5.79 -19.86 -0.12 -2.95 16 24 C 0.09 2.46 4.37 85.53 0.37 2.83 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 1.74 6.40 -2.39 -0.02 1.73 16 27 H 0.05 1.66 6.68 -2.39 -0.02 1.64 16 28 H 0.05 2.06 6.09 -2.39 -0.01 2.05 16 29 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.00 0.01 6.82 -2.39 -0.02 -0.01 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.10 1.93 6.13 -2.39 -0.01 1.91 16 34 H 0.04 0.85 8.05 -2.39 -0.02 0.83 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.09 2.60 6.34 -2.39 -0.02 2.58 16 40 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 Total: -1.00 -63.42 333.34 1.59 -61.83 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.03 Total: 8.36 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.19 Total: -28.05 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -5.58 Total: -87.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -63.42 1.59 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.101 kcal (2) G-P(sol) polarization free energy of solvation -63.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds