Wall clock time and date at job start Tue Mar 31 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 6 6 N 1.46499 * 110.85219 * 339.03017 * 4 2 1 7 7 C 1.36934 * 120.00324 * 200.14102 * 6 4 2 8 8 H 1.08001 * 120.00178 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00193 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00311 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00063 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47330 * 89.99101 * 11 9 7 13 13 H 1.48502 * 109.47090 * 209.99851 * 11 9 7 14 14 H 1.48502 * 109.46780 * 329.99682 * 11 9 7 15 15 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 16 16 C 1.54918 * 101.58012 * 35.30827 * 15 4 2 17 17 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 18 18 C 1.34780 * 125.64445 * 59.56136 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47482 * 179.97438 * 21 20 18 23 23 F 1.39900 * 109.47126 * 59.99914 * 22 21 20 24 24 F 1.39906 * 109.47544 * 179.97438 * 22 21 20 25 25 F 1.39905 * 109.47115 * 300.00260 * 22 21 20 26 26 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 27 27 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 28 28 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 29 29 H 0.96999 * 119.99800 * 20.14306 * 6 4 2 30 30 H 0.96996 * 119.99883 * 180.02562 * 10 9 7 31 31 H 1.08998 * 111.00676 * 277.23890 * 15 4 2 32 32 H 1.09003 * 111.04375 * 153.39206 * 15 4 2 33 33 H 1.09003 * 110.36670 * 204.15269 * 16 15 4 34 34 H 1.09001 * 110.46005 * 81.87572 * 16 15 4 35 35 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 36 36 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 37 37 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 38 38 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 1 2.9600 -0.2828 1.6225 6 7 1.0258 -0.8101 2.2862 7 6 1.3838 -1.0489 3.5862 8 1 2.4230 -1.1936 3.8422 9 6 0.4113 -1.1039 4.5751 10 7 0.7554 -1.3328 5.8247 11 14 -1.3861 -0.8529 4.1325 12 1 -2.0019 -2.1629 3.8012 13 1 -2.1000 -0.2476 5.2855 14 1 -1.4852 0.0515 2.9588 15 6 2.3561 -2.1697 0.6914 16 6 2.8613 -1.8464 -0.7370 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3843 -2.4657 19 8 1.0746 0.5729 -2.7180 20 6 2.3613 -1.2051 -3.5855 21 6 1.9206 -0.6223 -4.9297 22 6 2.5159 -1.4552 -6.0666 23 9 2.0671 -2.7760 -5.9615 24 9 2.1124 -0.9225 -7.2958 25 9 3.9121 -1.4290 -5.9822 26 1 -0.3633 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5195 -0.8868 29 1 0.0925 -0.6798 2.0564 30 1 0.0758 -1.3716 6.5156 31 1 1.4522 -2.7778 0.6577 32 1 3.1326 -2.6598 1.2787 33 1 2.7178 -2.7048 -1.3934 34 1 3.9125 -1.5593 -0.7135 35 1 3.4491 -1.1855 -3.5197 36 1 2.0109 -2.2340 -3.5037 37 1 0.8327 -0.6423 -4.9953 38 1 2.2706 0.4067 -5.0119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178417869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:08 Heat of formation + Delta-G solvation = -175.532993 kcal Electronic energy + Delta-G solvation = -24200.756273 eV Core-core repulsion = 20049.561407 eV Total energy + Delta-G solvation = -4151.194867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.41252 -47.90746 -47.88937 -40.29237 -37.89689 -34.43851 -34.03091 -31.82899 -30.92031 -29.66997 -27.19043 -25.55993 -23.63928 -22.83709 -22.30174 -19.82145 -19.05541 -18.87734 -18.47605 -18.02483 -17.84500 -16.57835 -16.23636 -15.55983 -15.26082 -14.77932 -14.70092 -14.33318 -14.27882 -14.16449 -14.04106 -14.02276 -13.66336 -13.41737 -12.98147 -12.76501 -12.61890 -12.25030 -12.11290 -12.00698 -11.78388 -11.73500 -11.46256 -11.24189 -10.94972 -10.62372 -10.39977 -10.13894 -9.85469 -9.60752 -9.03444 -8.62124 -7.39177 -5.86549 -3.23775 2.37899 2.52955 2.90509 3.30467 3.33304 3.39765 3.51301 3.69063 3.74517 4.34501 4.50268 4.54444 4.57489 4.84570 4.96869 5.08331 5.11012 5.27303 5.32690 5.40870 5.45714 5.47835 5.58570 5.77537 5.82953 5.95417 6.09965 6.30007 6.43758 6.46589 6.50559 6.76737 7.53159 7.88220 8.07994 8.32208 9.09381 9.81579 10.00027 11.31291 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.003199 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.876438 B = 8751.542379 C = 9045.098095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.072 0.928 6 N -0.741 5.741 7 C -0.250 4.250 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.153 4.153 16 C 0.094 3.906 17 N -0.607 5.607 18 C 0.532 3.468 19 O -0.543 6.543 20 C -0.143 4.143 21 C -0.150 4.150 22 C 0.453 3.547 23 F -0.184 7.184 24 F -0.184 7.184 25 F -0.184 7.184 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.368 0.632 30 H 0.261 0.739 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 -1.311 -22.616 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.068 3.932 5 H 0.090 0.910 6 N -0.386 5.386 7 C -0.379 4.379 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.320 3.680 19 O -0.421 6.421 20 C -0.183 4.183 21 C -0.188 4.188 22 C 0.399 3.601 23 F -0.165 7.165 24 F -0.165 7.165 25 F -0.166 7.166 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.572 -0.830 -22.591 23.064 hybrid contribution -1.141 -0.159 -0.330 1.199 sum 3.431 -0.989 -22.922 23.198 Atomic orbital electron populations 1.22090 0.95073 1.02322 1.02787 1.21853 0.95051 0.96139 0.84656 0.90556 1.21148 0.93019 0.92345 0.86729 0.90990 1.42968 1.04210 1.86925 1.04497 1.19049 0.95337 1.41599 0.81951 0.89014 1.24654 0.97398 1.01491 0.95160 1.69689 1.32737 1.55574 0.99690 0.86662 0.86842 0.78113 0.77499 1.20930 1.21502 1.20200 1.23516 1.02018 1.00896 0.92930 1.22467 0.94670 0.88352 0.97374 1.48578 1.49918 1.30695 1.04887 1.19815 0.80961 0.84884 0.82352 1.90707 1.38937 1.29207 1.83291 1.21601 1.03555 1.01311 0.91806 1.22608 1.04840 1.00859 0.90541 1.20612 0.76339 0.79137 0.84054 1.93192 1.88979 1.38234 1.96137 1.93197 1.90388 1.86062 1.46858 1.93190 1.30614 1.96438 1.96312 0.92508 0.90819 0.91574 0.79586 0.92899 0.90674 0.89953 0.91042 0.91153 0.87596 0.87617 0.86409 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 7.93 37.15 0.29 -2.44 16 2 C 0.13 1.99 3.49 -66.95 -0.23 1.76 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.18 3.12 3.45 -66.10 -0.23 2.89 16 5 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 6 N -0.74 -16.36 4.82 -51.65 -0.25 -16.61 16 7 C -0.25 -6.65 10.46 -15.06 -0.16 -6.81 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 11 Si 0.88 21.38 27.74 -169.99 -4.71 16.67 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.30 6.50 56.52 0.37 -5.93 16 15 C -0.15 -2.21 6.77 -24.58 -0.17 -2.38 16 16 C 0.09 1.04 6.69 -2.53 -0.02 1.02 16 17 N -0.61 -7.96 3.08 -163.01 -0.50 -8.46 16 18 C 0.53 6.70 7.63 -10.98 -0.08 6.61 16 19 O -0.54 -8.54 14.87 5.56 0.08 -8.46 16 20 C -0.14 -1.20 4.46 -27.88 -0.12 -1.33 16 21 C -0.15 -1.19 4.55 -26.74 -0.12 -1.31 16 22 C 0.45 3.75 3.16 37.15 0.12 3.87 16 23 F -0.18 -1.65 16.80 2.25 0.04 -1.62 16 24 F -0.18 -1.69 17.32 2.25 0.04 -1.65 16 25 F -0.18 -1.62 16.80 2.25 0.04 -1.58 16 26 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 27 H 0.07 1.32 6.71 -51.93 -0.35 0.97 16 28 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 29 H 0.37 8.07 2.80 -40.82 -0.11 7.96 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.62 7.48 -51.93 -0.39 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.73 7.80 -51.93 -0.41 0.33 16 36 H 0.11 0.77 7.51 -51.93 -0.39 0.38 16 37 H 0.12 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.12 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -31.05 320.55 -5.44 -36.49 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.96 Total: 5.84 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.82 Total: 2.05 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.02 Total: -52.57 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.05 -5.44 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178417869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.042 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds