Wall clock time and date at job start Tue Mar 31 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 6 6 N 1.46499 * 110.85219 * 339.03017 * 4 2 1 7 7 C 1.36934 * 120.00324 * 200.14102 * 6 4 2 8 8 H 1.08001 * 120.00178 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00193 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00311 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00063 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47330 * 89.99101 * 11 9 7 13 13 H 1.48502 * 109.47090 * 209.99851 * 11 9 7 14 14 H 1.48502 * 109.46780 * 329.99682 * 11 9 7 15 15 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 16 16 C 1.54918 * 101.58012 * 35.30827 * 15 4 2 17 17 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 18 18 C 1.34780 * 125.64445 * 59.56136 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47482 * 179.97438 * 21 20 18 23 23 F 1.39900 * 109.47126 * 59.99914 * 22 21 20 24 24 F 1.39906 * 109.47544 * 179.97438 * 22 21 20 25 25 F 1.39905 * 109.47115 * 300.00260 * 22 21 20 26 26 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 27 27 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 28 28 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 29 29 H 0.96999 * 119.99800 * 20.14306 * 6 4 2 30 30 H 0.96996 * 119.99883 * 180.02562 * 10 9 7 31 31 H 1.08998 * 111.00676 * 277.23890 * 15 4 2 32 32 H 1.09003 * 111.04375 * 153.39206 * 15 4 2 33 33 H 1.09003 * 110.36670 * 204.15269 * 16 15 4 34 34 H 1.09001 * 110.46005 * 81.87572 * 16 15 4 35 35 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 36 36 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 37 37 H 1.09002 * 109.47153 * 299.99998 * 21 20 18 38 38 H 1.08998 * 109.47533 * 59.99628 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 1 2.9600 -0.2828 1.6225 6 7 1.0258 -0.8101 2.2862 7 6 1.3838 -1.0489 3.5862 8 1 2.4230 -1.1936 3.8422 9 6 0.4113 -1.1039 4.5751 10 7 0.7554 -1.3328 5.8247 11 14 -1.3861 -0.8529 4.1325 12 1 -2.0019 -2.1629 3.8012 13 1 -2.1000 -0.2476 5.2855 14 1 -1.4852 0.0515 2.9588 15 6 2.3561 -2.1697 0.6914 16 6 2.8613 -1.8464 -0.7370 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3843 -2.4657 19 8 1.0746 0.5729 -2.7180 20 6 2.3613 -1.2051 -3.5855 21 6 1.9206 -0.6223 -4.9297 22 6 2.5159 -1.4552 -6.0666 23 9 2.0671 -2.7760 -5.9615 24 9 2.1124 -0.9225 -7.2958 25 9 3.9121 -1.4290 -5.9822 26 1 -0.3633 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5195 -0.8868 29 1 0.0925 -0.6798 2.0564 30 1 0.0758 -1.3716 6.5156 31 1 1.4522 -2.7778 0.6577 32 1 3.1326 -2.6598 1.2787 33 1 2.7178 -2.7048 -1.3934 34 1 3.9125 -1.5593 -0.7135 35 1 3.4491 -1.1855 -3.5197 36 1 2.0109 -2.2340 -3.5037 37 1 0.8327 -0.6423 -4.9953 38 1 2.2706 0.4067 -5.0119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178417869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:08 Heat of formation + Delta-G solvation = -195.041121 kcal Electronic energy + Delta-G solvation = -24201.602209 eV Core-core repulsion = 20049.561407 eV Total energy + Delta-G solvation = -4152.040803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.07193 -48.58007 -48.54441 -41.37689 -39.09317 -36.04693 -34.81571 -33.61066 -32.13457 -31.17931 -28.01968 -26.93148 -25.09903 -24.10019 -23.17109 -21.03993 -20.18903 -19.83950 -19.52641 -19.28095 -18.63767 -17.54871 -17.25019 -16.72560 -16.47900 -16.01481 -15.68870 -15.46309 -15.35282 -14.99724 -14.90140 -14.72334 -14.70777 -14.63271 -14.35328 -13.96923 -13.68007 -13.45150 -13.25456 -13.11277 -13.05934 -12.87455 -12.69208 -12.62132 -12.36907 -12.22562 -11.91415 -11.71912 -11.54646 -10.97778 -10.87350 -9.69442 -9.31905 -8.02670 -5.36069 1.36502 1.37990 1.45002 1.57964 1.65149 2.00916 2.46759 2.84441 3.02351 3.11646 3.27005 3.48712 3.55908 3.73005 3.83883 3.97561 4.01029 4.13565 4.34164 4.36367 4.42376 4.50045 4.59761 4.66176 4.79986 4.82018 4.84970 5.02763 5.14639 5.24763 5.29387 5.47271 5.78110 6.21545 6.54229 7.06378 7.09996 7.82473 8.00130 9.18506 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.003199 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.876438 B = 8751.542379 C = 9045.098095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.071 0.929 4 C 0.167 3.833 5 H 0.067 0.933 6 N -0.747 5.747 7 C -0.226 4.226 8 H 0.065 0.935 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.940 3.060 12 H -0.278 1.278 13 H -0.297 1.297 14 H -0.255 1.255 15 C -0.147 4.147 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.578 6.578 20 C -0.134 4.134 21 C -0.146 4.146 22 C 0.459 3.541 23 F -0.187 7.187 24 F -0.190 7.190 25 F -0.185 7.185 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.369 0.631 30 H 0.257 0.743 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -1.953 -25.246 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.089 0.911 4 C 0.058 3.942 5 H 0.085 0.915 6 N -0.392 5.392 7 C -0.357 4.357 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.632 5.632 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.223 1.223 14 H -0.180 1.180 15 C -0.188 4.188 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.459 6.459 20 C -0.174 4.174 21 C -0.184 4.184 22 C 0.405 3.595 23 F -0.168 7.168 24 F -0.171 7.171 25 F -0.167 7.167 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.206 0.794 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.906 -1.482 -25.301 25.815 hybrid contribution -1.124 0.057 0.427 1.204 sum 3.782 -1.425 -24.874 25.200 Atomic orbital electron populations 1.21993 0.95718 1.01970 1.01888 1.21560 0.94443 0.95965 0.85182 0.91136 1.21369 0.91682 0.94749 0.86422 0.91516 1.42972 1.05372 1.87054 1.03847 1.19036 0.94029 1.38752 0.83847 0.91654 1.25375 1.01778 1.02813 0.95102 1.69854 1.33927 1.58446 1.00926 0.85654 0.81550 0.78467 0.77549 1.20394 1.22340 1.17950 1.23346 1.01818 0.98240 0.95367 1.22577 0.95256 0.88804 0.95279 1.48610 1.50190 1.30970 1.04435 1.20518 0.80194 0.84654 0.82632 1.90699 1.40520 1.30932 1.83727 1.21622 1.04657 1.01233 0.89847 1.22561 1.04798 1.00853 0.90210 1.20568 0.76161 0.78911 0.83830 1.93190 1.89008 1.38486 1.96125 1.93187 1.90461 1.86162 1.47337 1.93190 1.30769 1.96432 1.96295 0.92533 0.92438 0.91618 0.79411 0.93374 0.91740 0.89826 0.87563 0.88767 0.85321 0.85679 0.86511 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 7.93 71.98 0.57 -4.46 16 2 C 0.13 3.98 3.49 45.34 0.16 4.14 16 3 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 4 C 0.17 5.64 3.45 46.18 0.16 5.80 16 5 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 6 N -0.75 -32.60 4.82 -317.33 -1.53 -34.13 16 7 C -0.23 -12.17 10.46 84.03 0.88 -11.29 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 10 N -0.98 -61.34 13.97 21.65 0.30 -61.03 16 11 Si 0.94 44.45 27.74 68.60 1.90 46.35 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 14 H -0.25 -10.98 6.50 99.48 0.65 -10.33 16 15 C -0.15 -3.94 6.77 31.99 0.22 -3.73 16 16 C 0.10 1.84 6.69 86.86 0.58 2.42 16 17 N -0.61 -14.13 3.08 -788.04 -2.43 -16.56 16 18 C 0.53 11.75 7.63 87.66 0.67 12.42 16 19 O -0.58 -17.09 14.87 -3.03 -0.05 -17.14 16 20 C -0.13 -1.72 4.46 29.85 0.13 -1.59 16 21 C -0.15 -1.90 4.55 30.59 0.14 -1.76 16 22 C 0.46 6.36 3.16 71.98 0.23 6.59 16 23 F -0.19 -2.81 16.80 44.97 0.76 -2.05 16 24 F -0.19 -3.12 17.32 44.97 0.78 -2.34 16 25 F -0.19 -2.71 16.80 44.97 0.76 -1.95 16 26 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 27 H 0.06 2.00 6.71 -2.38 -0.02 1.99 16 28 H 0.06 2.10 6.74 -2.38 -0.02 2.08 16 29 H 0.37 15.83 2.80 -92.71 -0.26 15.57 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 1.26 7.48 -2.39 -0.02 1.24 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.13 1.14 7.80 -2.39 -0.02 1.12 16 36 H 0.13 1.20 7.51 -2.39 -0.02 1.18 16 37 H 0.12 1.58 8.10 -2.39 -0.02 1.56 16 38 H 0.12 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -68.39 320.55 5.46 -62.93 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.76 Total: 20.28 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.20 Total: 5.64 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.65 Total: -111.72 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.14 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 2.29 Total: -6.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -68.39 5.46 -62.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178417869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.109 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds