Wall clock time and date at job start Tue Mar 31 2020 07:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46861 * 2 1 4 4 C 1.52998 * 109.47475 * 120.00002 * 2 1 3 5 5 C 1.53000 * 109.47267 * 293.57937 * 4 2 1 6 6 F 1.39903 * 109.47155 * 65.65749 * 5 4 2 7 7 F 1.39894 * 109.47060 * 185.65804 * 5 4 2 8 8 F 1.39902 * 109.46871 * 305.66098 * 5 4 2 9 9 C 1.50700 * 109.47257 * 240.00581 * 2 1 3 10 10 O 1.21276 * 119.99875 * 239.99700 * 9 2 1 11 11 N 1.34774 * 120.00200 * 59.99450 * 9 2 1 12 12 C 1.47430 * 125.64887 * 359.69530 * 11 9 2 13 13 C 1.55131 * 104.72526 * 155.81642 * 12 11 9 14 14 C 1.55162 * 101.48155 * 37.29519 * 13 12 11 15 15 H 1.09003 * 110.87132 * 82.77221 * 14 13 12 16 16 N 1.46506 * 110.71683 * 205.97034 * 14 13 12 17 17 C 1.36936 * 119.99787 * 268.52420 * 16 14 13 18 18 H 1.08008 * 119.99938 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00045 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00248 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47639 * 89.99531 * 21 19 17 23 23 H 1.48507 * 109.46997 * 209.99876 * 21 19 17 24 24 H 1.48505 * 109.46884 * 329.99234 * 21 19 17 25 25 C 1.47024 * 125.64893 * 180.02562 * 11 9 2 26 26 H 1.08998 * 109.47284 * 67.75033 * 1 2 3 27 27 H 1.09003 * 109.46780 * 187.74873 * 1 2 3 28 28 H 1.08996 * 109.46886 * 307.74733 * 1 2 3 29 29 H 1.09007 * 109.46647 * 53.57822 * 4 2 1 30 30 H 1.09002 * 109.47068 * 173.57448 * 4 2 1 31 31 H 1.09002 * 110.36593 * 274.75003 * 12 11 9 32 32 H 1.08998 * 110.36567 * 37.06882 * 12 11 9 33 33 H 1.08994 * 111.18788 * 279.19496 * 13 12 11 34 34 H 1.08991 * 110.90761 * 155.27224 * 13 12 11 35 35 H 0.96999 * 119.99802 * 88.52165 * 16 14 13 36 36 H 0.97001 * 120.00582 * 180.02562 * 20 19 17 37 37 H 1.08991 * 109.88254 * 300.43820 * 25 11 9 38 38 H 1.09002 * 109.88289 * 61.61083 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6662 0.0871 2.4933 6 9 0.2745 0.1069 2.6356 7 9 2.2421 -0.5031 3.6233 8 9 2.1398 1.3965 2.3583 9 6 2.0324 -0.7103 -1.2305 10 8 2.7297 -1.6963 -1.1193 11 7 1.7068 -0.2498 -2.4546 12 6 0.8657 0.9284 -2.7337 13 6 1.2939 1.3918 -4.1508 14 6 1.5388 0.0332 -4.8592 15 1 0.6028 -0.3874 -5.2267 16 7 2.5014 0.1852 -5.9531 17 6 2.0601 0.4572 -7.2205 18 1 1.0025 0.5602 -7.4137 19 6 2.9721 0.6007 -8.2571 20 7 4.2610 0.4758 -8.0217 21 14 2.3702 0.9725 -9.9860 22 1 2.2962 2.4430 -10.1789 23 1 3.3134 0.3904 -10.9744 24 1 1.0225 0.3794 -10.1791 25 6 2.1259 -0.8432 -3.7328 26 1 -0.3634 0.3891 -0.9511 27 1 -0.3633 -1.0183 0.1386 28 1 -0.3633 0.6291 0.8126 29 1 1.5859 -1.7104 1.3085 30 1 3.1241 -0.8219 1.1935 31 1 -0.1888 0.6525 -2.7247 32 1 1.0592 1.7142 -2.0035 33 1 2.2088 1.9829 -4.1123 34 1 0.4920 1.9471 -4.6373 35 1 3.4513 0.0932 -5.7795 36 1 4.8984 0.5764 -8.7460 37 1 3.2137 -0.8515 -3.7986 38 1 1.7396 -1.8593 -3.8141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185368786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:47 Heat of formation + Delta-G solvation = -180.494012 kcal Electronic energy + Delta-G solvation = -24157.532362 eV Core-core repulsion = 20006.122369 eV Total energy + Delta-G solvation = -4151.409993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.39875 -47.88997 -47.84795 -40.21327 -37.57268 -35.17705 -34.17726 -31.60934 -29.64159 -29.49493 -27.61580 -25.28288 -23.88900 -23.03416 -21.94283 -20.17347 -19.40407 -18.83578 -18.50091 -17.84495 -17.44068 -16.48884 -15.92617 -15.55767 -15.20416 -14.80369 -14.68110 -14.37661 -14.33788 -14.09450 -13.99800 -13.73165 -13.56961 -13.40541 -13.22992 -12.73190 -12.55967 -12.34474 -12.02922 -11.89091 -11.77777 -11.52281 -11.42154 -11.20873 -10.87765 -10.74516 -10.38835 -10.14083 -9.82819 -9.73034 -9.02217 -8.51523 -7.10207 -5.86778 -3.17900 2.43520 2.60728 2.99303 3.37820 3.43164 3.45094 3.57279 3.72254 3.80085 4.31502 4.50260 4.53216 4.55402 4.85233 4.95800 5.16047 5.20649 5.25941 5.34645 5.42866 5.48480 5.52919 5.60857 5.69835 5.87792 5.89569 6.08146 6.17533 6.29723 6.47330 6.53791 6.82641 7.59357 7.60863 8.14808 8.30360 9.41936 9.95597 10.30100 11.35292 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002891 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.458342 B = 9683.428671 C = 9867.512103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.148 4.148 5 C 0.454 3.546 6 F -0.181 7.181 7 F -0.184 7.184 8 F -0.183 7.183 9 C 0.534 3.466 10 O -0.545 6.545 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.156 4.156 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.715 5.715 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.099 3.901 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 0.880 20.250 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.132 4.132 3 H 0.128 0.872 4 C -0.186 4.186 5 C 0.400 3.600 6 F -0.163 7.163 7 F -0.165 7.165 8 F -0.165 7.165 9 C 0.322 3.678 10 O -0.423 6.423 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.085 0.915 16 N -0.355 5.355 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.024 4.024 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.190 0.353 20.202 21.802 hybrid contribution 0.019 0.440 -0.693 0.822 sum -8.172 0.794 19.508 21.166 Atomic orbital electron populations 1.22257 0.91870 1.03833 1.04466 1.21200 0.98719 1.01312 0.91947 0.87245 1.22714 1.06549 1.00178 0.89199 1.20586 0.74552 0.78817 0.86079 1.93151 1.30394 1.96465 1.96241 1.93192 1.84538 1.83775 1.55020 1.93186 1.88252 1.39139 1.95897 1.19807 0.80354 0.84424 0.83233 1.90716 1.38690 1.26671 1.86213 1.48412 1.50478 1.29751 1.05415 1.22591 0.94333 0.87112 0.98754 1.23639 1.02198 1.01026 0.92874 1.21195 0.93968 0.91572 0.87297 0.91464 1.42370 1.04715 1.84599 1.03845 1.19219 0.92478 1.41277 0.84837 0.90920 1.24782 0.95284 1.02264 0.98268 1.69663 1.00173 1.55955 1.31886 0.86166 0.77608 0.77912 0.84311 1.21612 1.21705 1.20651 1.22391 1.00716 0.97353 0.81949 0.90503 0.91523 0.90331 0.86503 0.86262 0.91153 0.91104 0.90548 0.90432 0.77928 0.93299 0.90997 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.27 37.16 0.31 -1.07 16 2 C -0.11 -1.09 1.98 -91.77 -0.18 -1.27 16 3 H 0.11 0.98 7.18 -51.92 -0.37 0.61 16 4 C -0.15 -1.34 4.20 -26.73 -0.11 -1.45 16 5 C 0.45 4.07 3.13 37.16 0.12 4.18 16 6 F -0.18 -1.62 14.39 2.25 0.03 -1.59 16 7 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 8 F -0.18 -1.77 16.46 2.25 0.04 -1.74 16 9 C 0.53 7.45 7.21 -10.99 -0.08 7.37 16 10 O -0.54 -9.47 16.22 5.56 0.09 -9.38 16 11 N -0.61 -8.61 3.32 -170.38 -0.57 -9.17 16 12 C 0.10 1.11 5.15 -2.41 -0.01 1.10 16 13 C -0.16 -2.36 6.78 -24.46 -0.17 -2.52 16 14 C 0.17 3.12 3.61 -66.09 -0.24 2.88 16 15 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 16 N -0.72 -16.93 5.22 -51.64 -0.27 -17.20 16 17 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 21 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.10 1.67 6.62 -3.06 -0.02 1.65 16 26 H 0.08 0.61 4.84 -51.93 -0.25 0.36 16 27 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.08 0.58 6.02 -51.93 -0.31 0.27 16 29 H 0.12 1.00 8.12 -51.92 -0.42 0.58 16 30 H 0.12 1.12 7.90 -51.93 -0.41 0.71 16 31 H 0.07 0.70 6.96 -51.93 -0.36 0.34 16 32 H 0.07 0.68 7.42 -51.93 -0.39 0.30 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.39 9.89 7.56 -40.82 -0.31 9.59 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.35 7.72 -51.93 -0.40 0.95 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -30.37 319.75 -5.63 -36.00 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.88 Total: 6.15 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.63 Total: 3.86 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.11 Total: -52.94 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.37 -5.63 -36.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185368786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.497 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds