Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46861 * 2 1 4 4 C 1.52998 * 109.47475 * 120.00002 * 2 1 3 5 5 C 1.53000 * 109.47267 * 293.57937 * 4 2 1 6 6 F 1.39903 * 109.47155 * 65.65749 * 5 4 2 7 7 F 1.39894 * 109.47060 * 185.65804 * 5 4 2 8 8 F 1.39902 * 109.46871 * 305.66098 * 5 4 2 9 9 C 1.50700 * 109.47257 * 240.00581 * 2 1 3 10 10 O 1.21276 * 119.99875 * 239.99700 * 9 2 1 11 11 N 1.34774 * 120.00200 * 59.99450 * 9 2 1 12 12 C 1.47430 * 125.64887 * 359.69530 * 11 9 2 13 13 C 1.55131 * 104.72526 * 155.81642 * 12 11 9 14 14 C 1.55162 * 101.48155 * 37.29519 * 13 12 11 15 15 H 1.09003 * 110.87132 * 82.77221 * 14 13 12 16 16 N 1.46506 * 110.71683 * 205.97034 * 14 13 12 17 17 C 1.36936 * 119.99787 * 268.52420 * 16 14 13 18 18 H 1.08008 * 119.99938 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00045 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00248 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47639 * 89.99531 * 21 19 17 23 23 H 1.48507 * 109.46997 * 209.99876 * 21 19 17 24 24 H 1.48505 * 109.46884 * 329.99234 * 21 19 17 25 25 C 1.47024 * 125.64893 * 180.02562 * 11 9 2 26 26 H 1.08998 * 109.47284 * 67.75033 * 1 2 3 27 27 H 1.09003 * 109.46780 * 187.74873 * 1 2 3 28 28 H 1.08996 * 109.46886 * 307.74733 * 1 2 3 29 29 H 1.09007 * 109.46647 * 53.57822 * 4 2 1 30 30 H 1.09002 * 109.47068 * 173.57448 * 4 2 1 31 31 H 1.09002 * 110.36593 * 274.75003 * 12 11 9 32 32 H 1.08998 * 110.36567 * 37.06882 * 12 11 9 33 33 H 1.08994 * 111.18788 * 279.19496 * 13 12 11 34 34 H 1.08991 * 110.90761 * 155.27224 * 13 12 11 35 35 H 0.96999 * 119.99802 * 88.52165 * 16 14 13 36 36 H 0.97001 * 120.00582 * 180.02562 * 20 19 17 37 37 H 1.08991 * 109.88254 * 300.43820 * 25 11 9 38 38 H 1.09002 * 109.88289 * 61.61083 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6662 0.0871 2.4933 6 9 0.2745 0.1069 2.6356 7 9 2.2421 -0.5031 3.6233 8 9 2.1398 1.3965 2.3583 9 6 2.0324 -0.7103 -1.2305 10 8 2.7297 -1.6963 -1.1193 11 7 1.7068 -0.2498 -2.4546 12 6 0.8657 0.9284 -2.7337 13 6 1.2939 1.3918 -4.1508 14 6 1.5388 0.0332 -4.8592 15 1 0.6028 -0.3874 -5.2267 16 7 2.5014 0.1852 -5.9531 17 6 2.0601 0.4572 -7.2205 18 1 1.0025 0.5602 -7.4137 19 6 2.9721 0.6007 -8.2571 20 7 4.2610 0.4758 -8.0217 21 14 2.3702 0.9725 -9.9860 22 1 2.2962 2.4430 -10.1789 23 1 3.3134 0.3904 -10.9744 24 1 1.0225 0.3794 -10.1791 25 6 2.1259 -0.8432 -3.7328 26 1 -0.3634 0.3891 -0.9511 27 1 -0.3633 -1.0183 0.1386 28 1 -0.3633 0.6291 0.8126 29 1 1.5859 -1.7104 1.3085 30 1 3.1241 -0.8219 1.1935 31 1 -0.1888 0.6525 -2.7247 32 1 1.0592 1.7142 -2.0035 33 1 2.2088 1.9829 -4.1123 34 1 0.4920 1.9471 -4.6373 35 1 3.4513 0.0932 -5.7795 36 1 4.8984 0.5764 -8.7460 37 1 3.2137 -0.8515 -3.7986 38 1 1.7396 -1.8593 -3.8141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185368786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = -199.829385 kcal Electronic energy + Delta-G solvation = -24158.370807 eV Core-core repulsion = 20006.122369 eV Total energy + Delta-G solvation = -4152.248437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.12343 -48.61627 -48.57438 -41.34759 -38.86378 -36.14361 -35.82226 -33.30533 -31.05496 -30.39703 -28.94686 -26.30237 -25.43181 -24.25154 -22.87468 -21.59865 -20.38009 -19.55839 -19.36535 -19.35041 -18.64858 -17.52225 -17.21365 -16.64015 -16.49251 -15.92357 -15.53092 -15.41115 -15.35313 -15.08127 -14.97959 -14.87099 -14.72180 -14.55174 -14.32999 -13.87974 -13.71986 -13.33153 -13.18326 -13.04546 -12.96268 -12.72542 -12.62628 -12.42928 -12.29822 -12.16503 -12.04907 -11.72398 -11.64970 -10.94073 -10.87643 -9.71298 -9.04277 -7.94739 -5.25029 1.49927 1.51302 1.51701 1.59553 1.62472 1.99129 2.57355 2.81849 2.96384 3.09214 3.35754 3.45176 3.68673 3.76633 3.80929 3.91411 4.06411 4.16092 4.30229 4.38330 4.49283 4.51283 4.62045 4.68645 4.84179 4.86557 4.90668 5.01883 5.18538 5.26370 5.28774 5.45019 5.54471 6.25821 6.49117 7.02994 7.32303 8.04528 8.27490 9.28789 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002891 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.458342 B = 9683.428671 C = 9867.512103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 H 0.125 0.875 4 C -0.146 4.146 5 C 0.462 3.538 6 F -0.178 7.178 7 F -0.189 7.189 8 F -0.186 7.186 9 C 0.531 3.469 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.102 3.898 13 C -0.147 4.147 14 C 0.164 3.836 15 H 0.074 0.926 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.085 0.915 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.266 1.266 25 C 0.108 3.892 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.043 0.957 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 1.864 21.450 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.122 4.122 3 H 0.143 0.857 4 C -0.185 4.185 5 C 0.408 3.592 6 F -0.159 7.159 7 F -0.170 7.170 8 F -0.167 7.167 9 C 0.320 3.680 10 O -0.466 6.466 11 N -0.341 5.341 12 C -0.019 4.019 13 C -0.188 4.188 14 C 0.055 3.945 15 H 0.092 0.908 16 N -0.371 5.371 17 C -0.371 4.371 18 H 0.103 0.897 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.191 1.191 25 C -0.016 4.016 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.703 1.358 21.448 24.008 hybrid contribution 0.743 0.098 -0.975 1.230 sum -9.959 1.456 20.473 22.813 Atomic orbital electron populations 1.22275 0.90106 1.04285 1.05412 1.21206 0.99976 1.01334 0.89722 0.85710 1.22679 1.06303 1.00454 0.89016 1.20433 0.74547 0.78505 0.85716 1.93158 1.30139 1.96437 1.96214 1.93186 1.84670 1.83875 1.55267 1.93184 1.88322 1.39338 1.95885 1.20570 0.79421 0.83989 0.83976 1.90700 1.40457 1.28667 1.86794 1.48476 1.50766 1.30306 1.04568 1.22762 0.95302 0.86807 0.97061 1.23437 1.01880 0.98633 0.94869 1.21418 0.92892 0.93772 0.86451 0.90812 1.42562 1.04914 1.84954 1.04653 1.19655 0.92898 1.38704 0.85799 0.89736 1.25595 0.95477 1.03657 1.02122 1.69830 1.01358 1.58529 1.32504 0.85130 0.77353 0.77552 0.79641 1.21363 1.22780 1.19071 1.22042 0.98900 0.97258 0.83399 0.89718 0.91534 0.89020 0.86035 0.86844 0.88106 0.88001 0.92558 0.89115 0.79667 0.94091 0.93811 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.27 71.98 0.60 -1.49 16 2 C -0.10 -1.72 1.98 -11.54 -0.02 -1.74 16 3 H 0.13 1.79 7.18 -2.38 -0.02 1.77 16 4 C -0.15 -2.37 4.20 30.59 0.13 -2.25 16 5 C 0.46 7.24 3.13 71.98 0.23 7.47 16 6 F -0.18 -2.69 14.39 44.97 0.65 -2.04 16 7 F -0.19 -3.36 17.32 44.97 0.78 -2.59 16 8 F -0.19 -3.14 16.46 44.97 0.74 -2.40 16 9 C 0.53 14.01 7.21 87.66 0.63 14.64 16 10 O -0.59 -20.28 16.22 -3.02 -0.05 -20.33 16 11 N -0.61 -16.21 3.32 -811.35 -2.69 -18.90 16 12 C 0.10 2.03 5.15 86.93 0.45 2.47 16 13 C -0.15 -4.15 6.78 32.07 0.22 -3.93 16 14 C 0.16 5.86 3.61 46.18 0.17 6.03 16 15 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 16 N -0.73 -35.11 5.22 -317.30 -1.66 -36.77 16 17 C -0.24 -12.55 9.96 84.03 0.84 -11.71 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 21 Si 0.97 44.66 29.55 68.60 2.03 46.69 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 C 0.11 3.67 6.62 86.73 0.57 4.24 16 26 H 0.08 0.95 4.84 -2.39 -0.01 0.94 16 27 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 28 H 0.09 0.98 6.02 -2.39 -0.01 0.97 16 29 H 0.12 1.87 8.12 -2.38 -0.02 1.86 16 30 H 0.11 2.01 7.90 -2.39 -0.02 1.99 16 31 H 0.10 1.49 6.96 -2.39 -0.02 1.47 16 32 H 0.10 1.48 7.42 -2.39 -0.02 1.47 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.37 19.77 7.56 -92.71 -0.70 19.07 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.04 1.72 7.72 -2.39 -0.02 1.70 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.88 319.75 4.74 -62.15 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.40 Total: 22.66 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 4.27 Total: 9.94 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.07 Total: -114.08 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 2.17 Total: -7.03 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.88 4.74 -62.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185368786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.684 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds