Wall clock time and date at job start Tue Mar 31 2020 07:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00253 * 2 1 4 4 C 1.38299 * 119.99986 * 180.02562 * 2 1 3 5 5 N 1.32554 * 119.07076 * 359.97438 * 4 2 1 6 6 C 1.32102 * 120.87783 * 180.02562 * 5 4 2 7 7 C 1.39786 * 119.03881 * 359.97438 * 6 5 4 8 8 C 1.48269 * 120.84451 * 179.97438 * 7 6 5 9 9 C 1.39844 * 119.53435 * 0.02562 * 8 7 6 10 10 C 1.37695 * 121.16563 * 179.73677 * 9 8 7 11 11 C 1.39595 * 120.18709 * 0.52831 * 10 9 8 12 12 C 1.43199 * 120.45454 * 179.73742 * 11 10 9 13 13 N 9.53382 * 148.25925 * 179.97438 * 4 1 2 14 14 C 1.46553 * 119.09168 * 359.46170 * 11 10 9 15 15 C 1.40846 * 120.55119 * 180.29939 * 14 11 10 16 16 H 1.07994 * 120.00357 * 335.80028 * 15 14 11 17 17 C 1.40235 * 119.99503 * 155.80642 * 15 14 11 18 18 N 1.30665 * 120.00070 * 341.84676 * 17 15 14 19 19 Si 1.86799 * 119.99868 * 161.86079 * 17 15 14 20 20 H 1.48499 * 109.47077 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47584 * 119.99516 * 19 17 15 22 22 H 1.48507 * 109.46797 * 239.99397 * 19 17 15 23 23 C 1.38628 * 119.54019 * 179.97438 * 8 7 6 24 24 C 1.39784 * 118.30852 * 0.25250 * 7 6 5 25 25 N 1.32104 * 119.04087 * 359.48685 * 24 7 6 26 26 H 1.09000 * 109.46640 * 269.99987 * 1 2 3 27 27 H 1.08994 * 109.47200 * 29.99337 * 1 2 3 28 28 H 1.08997 * 109.47284 * 149.99794 * 1 2 3 29 29 H 1.09000 * 109.47422 * 270.00226 * 3 2 1 30 30 H 1.08997 * 109.46675 * 30.00676 * 3 2 1 31 31 H 1.09001 * 109.47108 * 150.00431 * 3 2 1 32 32 H 1.08001 * 120.48068 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.42115 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.91048 * 180.28542 * 10 9 8 35 35 H 0.96998 * 119.99507 * 185.03429 * 18 17 15 36 36 H 1.08003 * 120.12922 * 0.02562 * 23 8 7 37 37 H 1.07998 * 120.47163 * 179.75052 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1565 -1.1977 -0.0005 5 7 1.4752 -2.3348 -0.0005 6 6 2.0993 -3.4990 -0.0005 7 6 3.4970 -3.5197 -0.0011 8 6 4.2383 -4.8038 -0.0005 9 6 3.5292 -6.0091 0.0000 10 6 4.1834 -7.2207 -0.0049 11 6 5.5786 -7.2651 0.0006 12 6 6.2649 -8.5219 0.0012 13 7 6.8093 -9.5191 -0.0020 14 6 6.3316 -6.0077 -0.0004 15 6 7.7400 -6.0166 -0.0013 16 1 8.2749 -6.8729 0.3821 17 6 8.4477 -4.9135 -0.5000 18 7 7.8481 -4.0480 -1.2738 19 14 10.2479 -4.6815 -0.0584 20 1 10.6878 -5.7910 0.8251 21 1 11.0657 -4.6812 -1.2978 22 1 10.4211 -3.3873 0.6492 23 6 5.6245 -4.7927 -0.0016 24 6 4.1779 -2.2990 0.0038 25 7 3.4818 -1.1763 -0.0016 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 2.3792 1.5834 -1.0276 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 1.5377 -4.4216 -0.0001 33 1 2.4494 -5.9894 -0.0004 34 1 3.6155 -8.1393 -0.0090 35 1 8.3545 -3.3260 -1.6776 36 1 6.1591 -3.8542 -0.0025 37 1 5.2576 -2.2741 0.0076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205005562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:46 Heat of formation + Delta-G solvation = 105.071462 kcal Electronic energy + Delta-G solvation = -21819.763906 eV Core-core repulsion = 18562.195373 eV Total energy + Delta-G solvation = -3257.568533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62981 -37.89930 -36.52709 -35.14498 -34.22457 -33.39493 -32.06170 -30.04551 -28.63635 -28.23185 -26.00591 -25.46818 -23.93943 -22.51799 -21.05719 -20.82450 -17.98545 -17.56721 -17.19552 -16.86491 -15.64813 -15.54007 -15.00722 -14.46743 -14.41471 -13.76367 -13.74189 -13.25013 -13.16181 -12.89015 -12.70862 -12.63556 -12.49654 -12.24124 -12.01024 -11.80209 -11.59803 -11.36865 -11.27606 -11.22734 -10.94464 -10.67871 -10.44751 -9.96698 -9.91825 -9.85963 -9.52427 -8.70277 -8.20494 -7.81560 -7.23597 -6.93168 -4.77157 1.16863 1.53695 2.36485 2.61147 2.81354 2.90572 2.96643 3.03142 3.66170 3.90005 3.99144 4.40948 4.44653 4.48342 4.79390 5.09678 5.20972 5.24676 5.31937 5.36584 5.41180 5.48534 5.54616 5.61108 5.77405 5.79799 6.02780 6.17364 6.24913 6.58752 6.67113 6.79065 6.91351 6.95080 7.10216 7.16953 7.40912 7.58681 7.64657 7.70991 7.82237 8.15523 8.38132 8.48606 8.56627 8.80910 9.70051 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.004364 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.488938 B = 6415.181147 C = 8037.555748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.601 5.601 3 C 0.106 3.894 4 C 0.541 3.459 5 N -0.569 5.569 6 C 0.188 3.812 7 C -0.180 4.180 8 C 0.001 3.999 9 C -0.242 4.242 10 C -0.024 4.024 11 C -0.187 4.187 12 C 0.300 3.700 13 N -0.510 5.510 14 C 0.150 3.850 15 C -0.428 4.428 16 H 0.088 0.912 17 C 0.077 3.923 18 N -0.764 5.764 19 Si 0.914 3.086 20 H -0.256 1.256 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.149 4.149 24 C 0.196 3.804 25 N -0.566 5.566 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.291 0.709 36 H 0.130 0.870 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 11.290 1.466 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.320 5.320 3 C -0.037 4.037 4 C 0.187 3.813 5 N -0.291 5.291 6 C 0.021 3.979 7 C -0.187 4.187 8 C -0.001 4.001 9 C -0.262 4.262 10 C -0.044 4.044 11 C -0.193 4.193 12 C -0.010 4.010 13 N -0.190 5.190 14 C 0.145 3.855 15 C -0.455 4.455 16 H 0.106 0.894 17 C -0.146 4.146 18 N -0.386 5.386 19 Si 0.737 3.263 20 H -0.179 1.179 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.169 4.169 24 C 0.029 3.971 25 N -0.288 5.288 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.811 11.079 1.355 14.220 hybrid contribution 1.029 -0.233 -0.028 1.055 sum -7.783 10.845 1.326 13.415 Atomic orbital electron populations 1.21531 0.78059 1.02780 1.01270 1.45680 1.05454 1.02004 1.78829 1.21545 0.97560 0.83235 1.01365 1.19235 0.85591 0.86163 0.90338 1.67781 1.40990 0.97879 1.22437 1.23095 0.91393 0.94732 0.88647 1.20490 0.94988 0.95728 1.07509 1.18151 0.93033 0.89590 0.99327 1.20050 0.97452 0.91291 1.17391 1.20358 0.91928 0.96529 0.95615 1.16962 0.91465 0.86063 1.24836 1.25813 0.91810 0.92216 0.91155 1.81026 1.09893 1.12876 1.15180 1.18308 0.92417 0.88743 0.86031 1.19831 0.91480 1.01278 1.32917 0.89415 1.26115 1.02065 0.93772 0.92662 1.69686 1.38959 1.11348 1.18644 0.86123 0.80374 0.79907 0.79893 1.17895 1.19391 1.18997 1.21325 0.91176 0.98410 1.05956 1.23258 1.00555 0.85837 0.87429 1.67834 1.06517 1.32290 1.22128 0.93468 0.91824 0.90247 0.93406 0.91821 0.90169 0.81444 0.88264 0.88134 0.89733 0.85237 0.80970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 10.44 59.85 0.62 1.70 16 2 N -0.60 -7.91 3.37 -191.90 -0.65 -8.56 16 3 C 0.11 1.11 10.44 59.85 0.62 1.73 16 4 C 0.54 8.85 8.17 -322.82 -2.64 6.22 16 5 N -0.57 -9.29 9.08 -13.67 -0.12 -9.41 16 6 C 0.19 3.02 10.68 -16.86 -0.18 2.84 16 7 C -0.18 -3.19 5.91 -104.62 -0.62 -3.80 16 8 C 0.00 0.03 5.86 -105.03 -0.62 -0.59 16 9 C -0.24 -4.47 9.39 -39.18 -0.37 -4.84 16 10 C -0.02 -0.46 9.74 -39.27 -0.38 -0.84 16 11 C -0.19 -4.16 5.95 -104.11 -0.62 -4.78 16 12 C 0.30 6.91 14.28 -22.47 -0.32 6.59 16 13 N -0.51 -12.16 18.54 41.84 0.78 -11.39 16 14 C 0.15 3.50 5.74 -104.68 -0.60 2.90 16 15 C -0.43 -10.12 8.58 -37.85 -0.32 -10.45 16 16 H 0.09 2.13 7.37 -52.49 -0.39 1.74 16 17 C 0.08 1.68 5.15 -17.30 -0.09 1.59 16 18 N -0.76 -16.74 10.96 55.56 0.61 -16.13 16 19 Si 0.91 16.75 29.60 -169.99 -5.03 11.72 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 23 C -0.15 -3.23 8.09 -38.55 -0.31 -3.54 16 24 C 0.20 3.44 10.68 -16.86 -0.18 3.26 16 25 N -0.57 -9.71 9.08 -13.67 -0.12 -9.83 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.07 -51.93 -0.42 0.06 16 28 H 0.08 0.88 7.32 -51.93 -0.38 0.50 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 32 H 0.17 2.28 6.26 -52.49 -0.33 1.95 16 33 H 0.10 1.54 6.18 -52.49 -0.32 1.22 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.29 5.73 8.30 -40.82 -0.34 5.39 16 36 H 0.13 2.79 4.33 -52.48 -0.23 2.56 16 37 H 0.17 2.94 6.28 -52.49 -0.33 2.61 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -26.66 324.86 -9.24 -35.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.60 Total: 4.81 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -6.00 Total: -2.01 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.49 Total: -55.31 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.66 -9.24 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205005562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.970 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds