Wall clock time and date at job start Tue Mar 31 2020 07:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00253 * 2 1 4 4 C 1.38299 * 119.99986 * 180.02562 * 2 1 3 5 5 N 1.32554 * 119.07076 * 359.97438 * 4 2 1 6 6 C 1.32102 * 120.87783 * 180.02562 * 5 4 2 7 7 C 1.39786 * 119.03881 * 359.97438 * 6 5 4 8 8 C 1.48269 * 120.84451 * 179.97438 * 7 6 5 9 9 C 1.39844 * 119.53435 * 0.02562 * 8 7 6 10 10 C 1.37695 * 121.16563 * 179.73677 * 9 8 7 11 11 C 1.39595 * 120.18709 * 0.52831 * 10 9 8 12 12 C 1.43199 * 120.45454 * 179.73742 * 11 10 9 13 13 N 9.53382 * 148.25925 * 179.97438 * 4 1 2 14 14 C 1.46553 * 119.09168 * 359.46170 * 11 10 9 15 15 C 1.40846 * 120.55119 * 180.29939 * 14 11 10 16 16 H 1.07994 * 120.00357 * 335.80028 * 15 14 11 17 17 C 1.40235 * 119.99503 * 155.80642 * 15 14 11 18 18 N 1.30665 * 120.00070 * 341.84676 * 17 15 14 19 19 Si 1.86799 * 119.99868 * 161.86079 * 17 15 14 20 20 H 1.48499 * 109.47077 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47584 * 119.99516 * 19 17 15 22 22 H 1.48507 * 109.46797 * 239.99397 * 19 17 15 23 23 C 1.38628 * 119.54019 * 179.97438 * 8 7 6 24 24 C 1.39784 * 118.30852 * 0.25250 * 7 6 5 25 25 N 1.32104 * 119.04087 * 359.48685 * 24 7 6 26 26 H 1.09000 * 109.46640 * 269.99987 * 1 2 3 27 27 H 1.08994 * 109.47200 * 29.99337 * 1 2 3 28 28 H 1.08997 * 109.47284 * 149.99794 * 1 2 3 29 29 H 1.09000 * 109.47422 * 270.00226 * 3 2 1 30 30 H 1.08997 * 109.46675 * 30.00676 * 3 2 1 31 31 H 1.09001 * 109.47108 * 150.00431 * 3 2 1 32 32 H 1.08001 * 120.48068 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.42115 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.91048 * 180.28542 * 10 9 8 35 35 H 0.96998 * 119.99507 * 185.03429 * 18 17 15 36 36 H 1.08003 * 120.12922 * 0.02562 * 23 8 7 37 37 H 1.07998 * 120.47163 * 179.75052 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1565 -1.1977 -0.0005 5 7 1.4752 -2.3348 -0.0005 6 6 2.0993 -3.4990 -0.0005 7 6 3.4970 -3.5197 -0.0011 8 6 4.2383 -4.8038 -0.0005 9 6 3.5292 -6.0091 0.0000 10 6 4.1834 -7.2207 -0.0049 11 6 5.5786 -7.2651 0.0006 12 6 6.2649 -8.5219 0.0012 13 7 6.8093 -9.5191 -0.0020 14 6 6.3316 -6.0077 -0.0004 15 6 7.7400 -6.0166 -0.0013 16 1 8.2749 -6.8729 0.3821 17 6 8.4477 -4.9135 -0.5000 18 7 7.8481 -4.0480 -1.2738 19 14 10.2479 -4.6815 -0.0584 20 1 10.6878 -5.7910 0.8251 21 1 11.0657 -4.6812 -1.2978 22 1 10.4211 -3.3873 0.6492 23 6 5.6245 -4.7927 -0.0016 24 6 4.1779 -2.2990 0.0038 25 7 3.4818 -1.1763 -0.0016 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 2.3792 1.5834 -1.0276 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 1.5377 -4.4216 -0.0001 33 1 2.4494 -5.9894 -0.0004 34 1 3.6155 -8.1393 -0.0090 35 1 8.3545 -3.3260 -1.6776 36 1 6.1591 -3.8542 -0.0025 37 1 5.2576 -2.2741 0.0076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205005562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:45 Heat of formation + Delta-G solvation = 94.529225 kcal Electronic energy + Delta-G solvation = -21820.221052 eV Core-core repulsion = 18562.195373 eV Total energy + Delta-G solvation = -3258.025679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89134 -39.44839 -37.68589 -36.88366 -35.82668 -34.66940 -33.50372 -31.66237 -30.03942 -29.09465 -27.62742 -26.65634 -25.26689 -23.82718 -22.60640 -22.22494 -19.55910 -18.95188 -18.55515 -18.20600 -17.22577 -16.60936 -16.42740 -15.75723 -15.60535 -15.20763 -14.84037 -14.67870 -14.63588 -14.47516 -14.39910 -14.01797 -13.43613 -13.38828 -13.31834 -13.10753 -13.01292 -12.84038 -12.79392 -12.74934 -12.46194 -12.14172 -11.73423 -11.49584 -11.43543 -11.33631 -11.01890 -9.99321 -9.52831 -9.44243 -8.83738 -8.31596 -6.49695 -0.24761 0.25451 0.82003 1.05684 1.38461 1.50514 1.53644 1.79288 2.08505 2.14947 2.40792 2.68848 3.05349 3.26972 3.65005 3.71535 3.75443 3.82177 4.05458 4.17304 4.39623 4.47708 4.52996 4.55662 4.79814 4.82358 4.90586 4.97212 4.98582 5.04282 5.18952 5.27217 5.39979 5.52454 5.80716 5.92491 5.95059 5.98745 6.11001 6.18977 6.40628 6.52091 6.69763 6.82380 7.02249 7.31869 8.10548 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.004364 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.488938 B = 6415.181147 C = 8037.555748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.599 5.599 3 C 0.102 3.898 4 C 0.532 3.468 5 N -0.574 5.574 6 C 0.202 3.798 7 C -0.204 4.204 8 C 0.012 3.988 9 C -0.231 4.231 10 C -0.021 4.021 11 C -0.212 4.212 12 C 0.305 3.695 13 N -0.535 5.535 14 C 0.131 3.869 15 C -0.465 4.465 16 H 0.068 0.932 17 C 0.049 3.951 18 N -0.784 5.784 19 Si 0.973 3.027 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.252 1.252 23 C -0.172 4.172 24 C 0.195 3.805 25 N -0.580 5.580 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.197 0.803 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.300 0.700 36 H 0.123 0.877 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.408 12.959 1.489 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.317 5.317 3 C -0.040 4.040 4 C 0.177 3.823 5 N -0.295 5.295 6 C 0.035 3.965 7 C -0.211 4.211 8 C 0.010 3.990 9 C -0.251 4.251 10 C -0.042 4.042 11 C -0.218 4.218 12 C -0.003 4.003 13 N -0.215 5.215 14 C 0.126 3.874 15 C -0.493 4.493 16 H 0.086 0.914 17 C -0.172 4.172 18 N -0.407 5.407 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.187 1.187 22 H -0.176 1.176 23 C -0.191 4.191 24 C 0.028 3.972 25 N -0.302 5.302 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.213 0.787 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.200 12.798 1.374 17.062 hybrid contribution 1.510 -0.591 -0.037 1.622 sum -9.690 12.208 1.336 15.643 Atomic orbital electron populations 1.21744 0.76127 1.03873 1.02218 1.46162 1.06818 1.01696 1.77001 1.21721 0.97412 0.82852 1.02061 1.19720 0.85643 0.87417 0.89547 1.67919 1.40648 0.97942 1.23034 1.23500 0.90705 0.95773 0.86554 1.20370 0.95774 0.94732 1.10260 1.18367 0.92423 0.91085 0.97148 1.20493 0.99383 0.90251 1.14923 1.20690 0.90845 0.98251 0.94399 1.17231 0.92824 0.85303 1.26445 1.26078 0.91407 0.92262 0.90584 1.80999 1.10391 1.13686 1.16422 1.18585 0.92707 0.89780 0.86332 1.19860 0.92166 1.01927 1.35321 0.91378 1.26667 1.05220 0.93125 0.92154 1.69688 1.40340 1.11765 1.18912 0.85275 0.76167 0.79697 0.79533 1.19224 1.18706 1.17609 1.21286 0.92288 0.97603 1.07971 1.23233 1.00546 0.86335 0.87130 1.67877 1.07149 1.31973 1.23228 0.92500 0.88705 0.91235 0.92767 0.88439 0.91736 0.78667 0.84354 0.85353 0.88829 0.85919 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.44 127.77 1.33 3.05 16 2 N -0.60 -14.19 3.37 -761.06 -2.57 -16.75 16 3 C 0.10 1.86 10.44 127.77 1.33 3.20 16 4 C 0.53 16.39 8.17 261.49 2.14 18.53 16 5 N -0.57 -17.28 9.08 -197.16 -1.79 -19.07 16 6 C 0.20 5.95 10.68 85.03 0.91 6.86 16 7 C -0.20 -6.95 5.91 -19.86 -0.12 -7.07 16 8 C 0.01 0.47 5.86 -20.13 -0.12 0.35 16 9 C -0.23 -7.96 9.39 22.53 0.21 -7.75 16 10 C -0.02 -0.80 9.74 22.47 0.22 -0.58 16 11 C -0.21 -9.53 5.95 -19.54 -0.12 -9.64 16 12 C 0.30 14.38 14.28 88.33 1.26 15.64 16 13 N -0.53 -26.04 18.54 19.00 0.35 -25.68 16 14 C 0.13 6.31 5.74 -19.90 -0.11 6.19 16 15 C -0.47 -23.08 8.58 23.39 0.20 -22.88 16 16 H 0.07 3.52 7.37 -2.91 -0.02 3.50 16 17 C 0.05 2.22 5.15 85.35 0.44 2.66 16 18 N -0.78 -35.25 10.96 21.88 0.24 -35.01 16 19 Si 0.97 35.14 29.60 68.60 2.03 37.17 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 23 C -0.17 -7.60 8.09 22.93 0.19 -7.42 16 24 C 0.19 6.78 10.68 85.03 0.91 7.69 16 25 N -0.58 -19.40 9.08 -197.16 -1.79 -21.19 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.02 8.07 -2.39 -0.02 1.00 16 28 H 0.07 1.33 7.32 -2.39 -0.02 1.32 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 31 H 0.06 1.41 7.33 -2.39 -0.02 1.39 16 32 H 0.20 4.46 6.26 -2.91 -0.02 4.45 16 33 H 0.14 3.65 6.18 -2.91 -0.02 3.63 16 34 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.30 12.01 8.30 -92.71 -0.77 11.24 16 36 H 0.12 5.50 4.33 -2.91 -0.01 5.49 16 37 H 0.17 5.86 6.28 -2.91 -0.02 5.85 16 Total: -1.00 -58.86 324.86 6.27 -52.58 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.13 Total: 19.13 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 8.67 Total: 8.83 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.55 Total: -117.71 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -58.86 6.27 -52.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205005562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.112 kcal (2) G-P(sol) polarization free energy of solvation -58.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds