Wall clock time and date at job start Tue Mar 31 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46891 * 119.99692 * 2 1 3 5 5 O 1.21288 * 119.99917 * 120.00317 * 4 2 1 6 6 N 1.34771 * 120.00328 * 300.00028 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 H 1.09002 * 110.64241 * 31.85771 * 7 6 4 9 9 C 1.54334 * 110.85086 * 268.69192 * 7 6 4 10 10 N 1.47014 * 107.26782 * 219.67402 * 9 7 6 11 11 C 1.36945 * 125.64902 * 178.84833 * 10 9 7 12 12 H 1.07997 * 119.99756 * 179.68982 * 11 10 9 13 13 C 1.38805 * 119.99878 * 359.68887 * 11 10 9 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00277 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00228 * 15 13 11 18 18 H 1.48499 * 109.46981 * 150.00382 * 15 13 11 19 19 C 1.47428 * 108.70537 * 358.58102 * 10 9 7 20 20 C 1.54919 * 104.82744 * 24.35958 * 19 10 9 21 21 H 1.09002 * 111.00228 * 81.06387 * 20 19 10 22 22 C 1.52993 * 110.99944 * 204.91728 * 20 19 10 23 23 C 1.52999 * 109.47133 * 239.99737 * 2 1 3 24 24 F 1.39905 * 109.47297 * 299.99971 * 23 2 1 25 25 F 1.39896 * 109.47051 * 59.99932 * 23 2 1 26 26 F 1.39902 * 109.47002 * 179.97438 * 23 2 1 27 27 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47003 * 299.99979 * 1 2 3 29 29 H 1.09000 * 109.47290 * 60.00540 * 1 2 3 30 30 H 0.97005 * 119.99851 * 359.97438 * 6 4 2 31 31 H 1.08998 * 109.99457 * 100.19105 * 9 7 6 32 32 H 1.09007 * 109.77698 * 339.02924 * 9 7 6 33 33 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.36579 * 143.19056 * 19 10 9 35 35 H 1.08999 * 110.36944 * 265.52330 * 19 10 9 36 36 H 1.09002 * 109.47666 * 58.54873 * 22 20 19 37 37 H 1.09008 * 109.47143 * 178.54440 * 22 20 19 38 38 H 1.08999 * 109.47170 * 298.53910 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6508 8 1 3.1717 -1.3877 3.4643 9 6 1.1862 -2.0099 4.1186 10 7 1.1499 -1.9629 5.5875 11 6 0.3603 -2.7409 6.3917 12 1 0.4110 -2.6331 7.4651 13 6 -0.5050 -3.6678 5.8272 14 7 -0.5663 -3.7994 4.5190 15 14 -1.5814 -4.7296 6.9242 16 1 -0.8590 -5.9816 7.2643 17 1 -1.9012 -3.9884 8.1707 18 1 -2.8399 -5.0627 6.2097 19 6 2.1088 -0.9439 6.0518 20 6 2.2590 0.0322 4.8582 21 1 1.4345 0.7446 4.8300 22 6 3.6055 0.7568 4.9085 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -2.0403 -1.2492 25 9 1.5737 -0.0619 -2.3915 26 9 3.4390 -0.7208 -1.2495 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.1493 0.5390 2.5436 31 1 1.5088 -2.9969 3.7872 32 1 0.1983 -1.7861 3.7160 33 1 -1.1708 -4.4475 4.1246 34 1 1.7141 -0.4203 6.9226 35 1 3.0679 -1.4050 6.2877 36 1 4.4130 0.0248 4.8921 37 1 3.6957 1.4164 4.0454 38 1 3.6673 1.3456 5.8237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208342034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:12 Heat of formation + Delta-G solvation = -171.909867 kcal Electronic energy + Delta-G solvation = -25031.914369 eV Core-core repulsion = 20880.876613 eV Total energy + Delta-G solvation = -4151.037756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03453 -47.57032 -47.41379 -39.84342 -37.67146 -34.31385 -33.77763 -32.53502 -30.40746 -27.87493 -26.49990 -25.68155 -24.17926 -22.97140 -20.73609 -20.13701 -19.67103 -18.62518 -18.38322 -17.53305 -16.87846 -16.56648 -15.71994 -15.20663 -14.86208 -14.47755 -14.18841 -13.97092 -13.85365 -13.79205 -13.64320 -13.58035 -13.27771 -13.16456 -12.84280 -12.75875 -12.55760 -12.12912 -11.94068 -11.76150 -11.48520 -11.39026 -11.04445 -10.79848 -10.69474 -10.44405 -10.04354 -9.96899 -9.76487 -9.66437 -8.67575 -8.57586 -6.86281 -5.71473 -3.06840 2.57122 2.67758 3.19137 3.39903 3.44627 3.46773 3.68223 4.02565 4.17829 4.48654 4.70402 4.73706 4.86017 5.02996 5.26242 5.32749 5.38681 5.45259 5.52470 5.70604 5.87664 5.93346 5.94325 6.09773 6.13766 6.29068 6.43064 6.58398 6.64422 6.87186 7.45345 7.54561 7.72389 7.81722 8.22593 8.32576 9.19446 9.80121 10.44475 11.39273 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.004700 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.342244 B = 5955.552870 C = 6986.311441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.162 4.162 3 H 0.135 0.865 4 C 0.520 3.480 5 O -0.519 6.519 6 N -0.702 5.702 7 C 0.119 3.881 8 H 0.091 0.909 9 C 0.173 3.827 10 N -0.606 5.606 11 C -0.231 4.231 12 H 0.079 0.921 13 C -0.007 4.007 14 N -0.919 5.919 15 Si 0.912 3.088 16 H -0.288 1.288 17 H -0.281 1.281 18 H -0.291 1.291 19 C 0.141 3.859 20 C -0.113 4.113 21 H 0.078 0.922 22 C -0.137 4.137 23 C 0.473 3.527 24 F -0.168 7.168 25 F -0.185 7.185 26 F -0.175 7.175 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.398 0.602 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.253 0.747 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 13.167 -9.035 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 H 0.153 0.847 4 C 0.303 3.697 5 O -0.394 6.394 6 N -0.352 5.352 7 C 0.015 3.985 8 H 0.109 0.891 9 C 0.047 3.953 10 N -0.333 5.333 11 C -0.360 4.360 12 H 0.097 0.903 13 C -0.203 4.203 14 N -0.566 5.566 15 Si 0.743 3.257 16 H -0.216 1.216 17 H -0.207 1.207 18 H -0.217 1.217 19 C 0.014 3.986 20 C -0.133 4.133 21 H 0.096 0.904 22 C -0.195 4.195 23 C 0.418 3.582 24 F -0.150 7.150 25 F -0.167 7.167 26 F -0.156 7.156 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.232 0.768 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.252 12.241 -9.152 15.865 hybrid contribution -0.821 -0.301 0.322 0.932 sum 3.431 11.940 -8.830 15.241 Atomic orbital electron populations 1.21849 0.89193 1.05278 1.04513 1.22639 1.01474 1.02671 0.91693 0.84726 1.19621 0.81069 0.84797 0.84225 1.90825 1.37295 1.25048 1.86226 1.45759 1.52872 1.31431 1.05145 1.22596 0.99697 0.94166 0.82080 0.89105 1.21477 0.95447 0.94645 0.83698 1.44406 1.45126 1.41941 1.01790 1.19046 1.14491 1.13108 0.89314 0.90306 1.24823 0.99953 0.99610 0.95960 1.69963 1.40476 1.37840 1.08332 0.86121 0.79850 0.80531 0.79248 1.21559 1.20694 1.21699 1.21589 0.93370 0.89442 0.94200 1.22621 0.97482 0.96886 0.96339 0.90411 1.21700 0.96784 1.00019 1.01016 1.19789 0.75862 0.78125 0.84432 1.93234 1.88207 1.36899 1.96611 1.93163 1.88622 1.80947 1.53951 1.93206 1.29389 1.96386 1.96666 0.90105 0.89621 0.90249 0.76826 0.93382 0.93019 0.93690 0.93889 0.96007 0.92566 0.93170 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.85 37.16 0.33 -1.13 16 2 C -0.16 -1.83 2.71 -91.77 -0.25 -2.07 16 3 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.52 8.12 6.92 -10.99 -0.08 8.04 16 5 O -0.52 -10.53 14.48 5.55 0.08 -10.45 16 6 N -0.70 -10.28 5.00 -52.03 -0.26 -10.54 16 7 C 0.12 2.17 2.78 -66.09 -0.18 1.98 16 8 H 0.09 1.79 7.42 -51.93 -0.39 1.40 16 9 C 0.17 4.17 5.13 -3.06 -0.02 4.15 16 10 N -0.61 -15.18 3.39 -170.06 -0.58 -15.76 16 11 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 12 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 13 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 14 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 15 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 C 0.14 2.77 6.70 -2.52 -0.02 2.75 16 20 C -0.11 -1.78 3.27 -88.47 -0.29 -2.07 16 21 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 22 C -0.14 -1.73 9.29 37.15 0.35 -1.38 16 23 C 0.47 6.35 2.42 37.16 0.09 6.44 16 24 F -0.17 -2.72 15.88 2.25 0.04 -2.68 16 25 F -0.19 -2.18 16.80 2.25 0.04 -2.14 16 26 F -0.18 -2.61 16.40 2.25 0.04 -2.57 16 27 H 0.08 0.96 7.80 -51.93 -0.41 0.56 16 28 H 0.08 0.70 7.56 -51.93 -0.39 0.31 16 29 H 0.08 0.60 7.80 -51.93 -0.41 0.20 16 30 H 0.40 4.47 7.98 -40.82 -0.33 4.14 16 31 H 0.05 1.37 7.52 -51.93 -0.39 0.98 16 32 H 0.05 1.35 7.25 -51.93 -0.38 0.98 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 36 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -33.09 323.18 -5.72 -38.81 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.17 Total: 0.11 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.32 Total: 9.88 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.27 Total: -52.85 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.40 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.09 -5.72 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208342034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.100 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds