Wall clock time and date at job start Tue Mar 31 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46891 * 119.99692 * 2 1 3 5 5 O 1.21288 * 119.99917 * 120.00317 * 4 2 1 6 6 N 1.34771 * 120.00328 * 300.00028 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 H 1.09002 * 110.64241 * 31.85771 * 7 6 4 9 9 C 1.54334 * 110.85086 * 268.69192 * 7 6 4 10 10 N 1.47014 * 107.26782 * 219.67402 * 9 7 6 11 11 C 1.36945 * 125.64902 * 178.84833 * 10 9 7 12 12 H 1.07997 * 119.99756 * 179.68982 * 11 10 9 13 13 C 1.38805 * 119.99878 * 359.68887 * 11 10 9 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00277 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00228 * 15 13 11 18 18 H 1.48499 * 109.46981 * 150.00382 * 15 13 11 19 19 C 1.47428 * 108.70537 * 358.58102 * 10 9 7 20 20 C 1.54919 * 104.82744 * 24.35958 * 19 10 9 21 21 H 1.09002 * 111.00228 * 81.06387 * 20 19 10 22 22 C 1.52993 * 110.99944 * 204.91728 * 20 19 10 23 23 C 1.52999 * 109.47133 * 239.99737 * 2 1 3 24 24 F 1.39905 * 109.47297 * 299.99971 * 23 2 1 25 25 F 1.39896 * 109.47051 * 59.99932 * 23 2 1 26 26 F 1.39902 * 109.47002 * 179.97438 * 23 2 1 27 27 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47003 * 299.99979 * 1 2 3 29 29 H 1.09000 * 109.47290 * 60.00540 * 1 2 3 30 30 H 0.97005 * 119.99851 * 359.97438 * 6 4 2 31 31 H 1.08998 * 109.99457 * 100.19105 * 9 7 6 32 32 H 1.09007 * 109.77698 * 339.02924 * 9 7 6 33 33 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.36579 * 143.19056 * 19 10 9 35 35 H 1.08999 * 110.36944 * 265.52330 * 19 10 9 36 36 H 1.09002 * 109.47666 * 58.54873 * 22 20 19 37 37 H 1.09008 * 109.47143 * 178.54440 * 22 20 19 38 38 H 1.08999 * 109.47170 * 298.53910 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6508 8 1 3.1717 -1.3877 3.4643 9 6 1.1862 -2.0099 4.1186 10 7 1.1499 -1.9629 5.5875 11 6 0.3603 -2.7409 6.3917 12 1 0.4110 -2.6331 7.4651 13 6 -0.5050 -3.6678 5.8272 14 7 -0.5663 -3.7994 4.5190 15 14 -1.5814 -4.7296 6.9242 16 1 -0.8590 -5.9816 7.2643 17 1 -1.9012 -3.9884 8.1707 18 1 -2.8399 -5.0627 6.2097 19 6 2.1088 -0.9439 6.0518 20 6 2.2590 0.0322 4.8582 21 1 1.4345 0.7446 4.8300 22 6 3.6055 0.7568 4.9085 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -2.0403 -1.2492 25 9 1.5737 -0.0619 -2.3915 26 9 3.4390 -0.7208 -1.2495 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.1493 0.5390 2.5436 31 1 1.5088 -2.9969 3.7872 32 1 0.1983 -1.7861 3.7160 33 1 -1.1708 -4.4475 4.1246 34 1 1.7141 -0.4203 6.9226 35 1 3.0679 -1.4050 6.2877 36 1 4.4130 0.0248 4.8921 37 1 3.6957 1.4164 4.0454 38 1 3.6673 1.3456 5.8237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208342034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:12 Heat of formation + Delta-G solvation = -194.877716 kcal Electronic energy + Delta-G solvation = -25032.910330 eV Core-core repulsion = 20880.876613 eV Total energy + Delta-G solvation = -4152.033717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.11404 -48.60879 -48.57310 -41.18661 -39.23533 -35.74128 -35.15395 -34.03240 -32.15146 -29.55934 -27.42102 -27.37908 -25.67499 -24.30589 -22.28191 -21.60920 -21.04974 -19.73469 -19.47040 -18.90490 -18.60591 -17.77562 -17.11340 -16.86803 -16.32096 -15.65658 -15.58487 -15.31966 -15.22833 -14.97722 -14.78242 -14.71951 -14.68966 -14.51131 -14.07742 -14.05501 -13.75318 -13.40671 -13.33399 -13.05140 -12.99223 -12.86258 -12.60517 -12.41679 -12.18234 -12.04827 -11.85563 -11.65057 -11.46309 -11.01737 -10.74858 -10.06859 -8.92228 -7.84853 -5.22364 1.41154 1.45141 1.47361 1.54869 1.56084 2.02699 2.49132 2.65995 3.01568 3.10352 3.33992 3.55487 3.70507 3.80163 3.82681 3.98822 4.06695 4.11910 4.50444 4.61307 4.63779 4.68578 4.73528 4.89610 5.07495 5.08662 5.11604 5.18351 5.29939 5.45196 5.51586 5.60585 5.77754 6.17004 6.43613 7.06163 7.14603 7.76123 8.39306 9.24170 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.004700 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.342244 B = 5955.552870 C = 6986.311441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 H 0.186 0.814 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.688 5.688 7 C 0.135 3.865 8 H 0.073 0.927 9 C 0.187 3.813 10 N -0.628 5.628 11 C -0.241 4.241 12 H 0.088 0.912 13 C -0.068 4.068 14 N -0.952 5.952 15 Si 0.978 3.022 16 H -0.291 1.291 17 H -0.263 1.263 18 H -0.296 1.296 19 C 0.131 3.869 20 C -0.091 4.091 21 H 0.098 0.902 22 C -0.130 4.130 23 C 0.466 3.534 24 F -0.191 7.191 25 F -0.172 7.172 26 F -0.186 7.186 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.419 0.581 31 H -0.014 1.014 32 H 0.024 0.976 33 H 0.244 0.756 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 16.340 -8.491 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 H 0.203 0.797 4 C 0.300 3.700 5 O -0.451 6.451 6 N -0.339 5.339 7 C 0.029 3.971 8 H 0.092 0.908 9 C 0.060 3.940 10 N -0.354 5.354 11 C -0.370 4.370 12 H 0.106 0.894 13 C -0.261 4.261 14 N -0.601 5.601 15 Si 0.807 3.193 16 H -0.218 1.218 17 H -0.187 1.187 18 H -0.222 1.222 19 C 0.005 3.995 20 C -0.111 4.111 21 H 0.116 0.884 22 C -0.187 4.187 23 C 0.411 3.589 24 F -0.173 7.173 25 F -0.154 7.154 26 F -0.168 7.168 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.257 0.743 31 H 0.005 0.995 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.162 15.486 -8.585 18.189 hybrid contribution -0.752 -1.309 0.156 1.517 sum 3.410 14.177 -8.428 16.842 Atomic orbital electron populations 1.21929 0.87711 1.04102 1.06978 1.22688 1.02340 1.03951 0.87835 0.79712 1.20411 0.79964 0.84147 0.85514 1.90811 1.39732 1.27529 1.87074 1.45529 1.52836 1.31572 1.03970 1.22106 0.96836 0.93728 0.84435 0.90838 1.21124 0.95387 0.93768 0.83682 1.44728 1.45675 1.42901 1.02137 1.19504 1.14228 1.13117 0.90178 0.89434 1.25690 1.01839 1.01344 0.97216 1.70221 1.41243 1.38479 1.10122 0.85077 0.77591 0.78611 0.78056 1.21796 1.18709 1.22220 1.21874 0.91986 0.89170 0.96428 1.22541 1.00512 0.95784 0.92280 0.88380 1.21663 0.93869 0.99931 1.03279 1.20164 0.75418 0.77518 0.85775 1.93192 1.88423 1.38884 1.96790 1.93185 1.88366 1.80417 1.53410 1.93183 1.30398 1.96378 1.96793 0.93117 0.87610 0.87351 0.74314 0.99527 0.95816 0.94679 0.92513 0.96006 0.93449 0.90837 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.85 71.98 0.64 -1.90 16 2 C -0.15 -2.95 2.71 -11.54 -0.03 -2.98 16 3 H 0.19 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.51 15.72 6.92 87.66 0.61 16.33 16 5 O -0.57 -24.01 14.48 -3.05 -0.04 -24.05 16 6 N -0.69 -19.16 5.00 -436.90 -2.18 -21.35 16 7 C 0.14 4.89 2.78 46.18 0.13 5.02 16 8 H 0.07 2.96 7.42 -2.39 -0.02 2.94 16 9 C 0.19 9.40 5.13 86.73 0.45 9.84 16 10 N -0.63 -31.99 3.39 -691.95 -2.35 -34.34 16 11 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 12 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 13 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 14 N -0.95 -58.82 10.31 21.65 0.22 -58.60 16 15 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 19 C 0.13 4.98 6.70 86.86 0.58 5.56 16 20 C -0.09 -2.65 3.27 -9.40 -0.03 -2.68 16 21 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 22 C -0.13 -2.76 9.29 71.98 0.67 -2.09 16 23 C 0.47 12.04 2.42 71.98 0.17 12.21 16 24 F -0.19 -6.36 15.88 44.97 0.71 -5.64 16 25 F -0.17 -3.70 16.80 44.97 0.76 -2.94 16 26 F -0.19 -5.45 16.40 44.97 0.74 -4.71 16 27 H 0.05 1.19 7.80 -2.39 -0.02 1.17 16 28 H 0.11 1.37 7.56 -2.39 -0.02 1.36 16 29 H 0.11 1.25 7.80 -2.39 -0.02 1.23 16 30 H 0.42 8.06 7.98 -92.70 -0.74 7.32 16 31 H -0.01 -0.83 7.52 -2.39 -0.02 -0.85 16 32 H 0.02 1.30 7.25 -2.38 -0.02 1.28 16 33 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 36 H 0.05 1.11 8.11 -2.39 -0.02 1.09 16 37 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.10 323.18 4.73 -73.37 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.34 Total: 6.81 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 4.51 Total: 23.23 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -4.31 Total: -114.29 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.04 Total: -24.05 kcal Atomic # 9 Polarization: -15.50 SS G_CDS: 2.21 Total: -13.29 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.10 4.73 -73.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208342034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.507 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds