Wall clock time and date at job start Tue Mar 31 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47457 * 180.02562 * 9 8 6 11 11 F 1.39902 * 109.46750 * 59.99913 * 10 9 8 12 12 F 1.39898 * 109.47532 * 180.02562 * 10 9 8 13 13 F 1.39902 * 109.46702 * 300.00529 * 10 9 8 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00339 * 81.07133 * 15 14 5 17 17 N 1.46505 * 111.00202 * 204.91694 * 15 14 5 18 18 C 1.36935 * 120.00217 * 273.54861 * 17 15 14 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00139 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47224 * 90.00046 * 22 20 18 24 24 H 1.48503 * 109.47388 * 210.00158 * 22 20 18 25 25 H 1.48501 * 109.47319 * 330.00053 * 22 20 18 26 26 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 27 27 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 28 28 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 29 29 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 30 30 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 31 31 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 32 32 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 33 33 H 1.08996 * 109.47291 * 300.00257 * 9 8 6 34 34 H 1.09002 * 109.46942 * 60.00365 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 36 36 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 37 37 H 0.96998 * 119.99743 * 93.55096 * 17 15 14 38 38 H 0.97003 * 119.99397 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 6 5.8310 -3.9850 -1.9437 10 6 7.0239 -4.7156 -1.3239 11 9 6.5811 -5.5176 -0.2665 12 9 7.6351 -5.5174 -2.2938 13 9 7.9463 -3.7793 -0.8445 14 6 3.4656 -1.2541 0.6849 15 6 2.0831 -0.7972 1.2139 16 1 1.4480 -1.6542 1.4382 17 7 2.2294 0.0667 2.3880 18 6 2.3264 -0.4860 3.6370 19 1 2.2947 -1.5590 3.7567 20 6 2.4645 0.3326 4.7495 21 7 2.5573 -0.1988 5.9501 22 14 2.5187 2.1882 4.5426 23 1 1.1404 2.7354 4.6199 24 1 3.3485 2.7826 5.6213 25 1 3.1105 2.5221 3.2222 26 1 -0.3633 -1.0272 0.0321 27 1 -0.3634 0.5414 0.8735 28 1 -0.3633 0.4858 -0.9056 29 1 2.3741 -0.1026 -1.9977 30 1 1.3121 -1.4741 -1.5791 31 1 5.8817 -2.3780 -0.5104 32 1 4.8185 -3.7322 -0.0589 33 1 5.1125 -4.7146 -2.3169 34 1 6.1756 -3.3601 -2.7677 35 1 3.7975 -2.1479 1.2131 36 1 4.1987 -0.4550 0.7952 37 1 2.2575 1.0303 2.2805 38 1 2.6534 0.3733 6.7275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214397398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:00 Heat of formation + Delta-G solvation = -186.514220 kcal Electronic energy + Delta-G solvation = -24062.196976 eV Core-core repulsion = 19910.525928 eV Total energy + Delta-G solvation = -4151.671048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.26831 -47.77431 -47.73363 -40.09590 -37.91097 -34.30864 -33.94558 -32.60564 -31.13276 -28.10051 -27.86457 -25.74045 -23.90573 -22.71247 -21.39437 -20.24153 -19.38193 -18.72710 -18.40845 -17.84290 -17.59711 -16.46979 -16.34863 -15.65108 -15.10657 -14.63423 -14.60819 -14.34378 -14.17539 -13.91898 -13.89066 -13.75042 -13.51060 -13.36554 -13.31530 -12.77137 -12.70248 -12.56248 -12.19018 -11.92899 -11.83914 -11.61240 -11.48730 -11.20973 -10.87786 -10.74257 -10.44813 -10.06162 -9.94943 -9.71650 -9.12590 -8.54725 -7.47053 -5.90932 -3.29663 2.50838 2.58615 3.00499 3.27425 3.30244 3.37120 3.64075 3.82539 3.87883 4.44016 4.46534 4.60112 4.71225 4.89154 4.90873 5.00827 5.17259 5.32140 5.39437 5.45045 5.54219 5.59652 5.62810 5.68011 5.76181 6.00883 6.02511 6.17780 6.24220 6.32060 6.39980 6.65574 7.56481 7.82269 8.11358 8.27494 9.03622 9.75747 9.93349 11.26562 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.003993 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.925778 B = 7010.821551 C = 8249.687570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.554 6.554 8 C -0.144 4.144 9 C -0.149 4.149 10 C 0.452 3.548 11 F -0.182 7.182 12 F -0.185 7.185 13 F -0.183 7.183 14 C 0.069 3.931 15 C 0.182 3.818 16 H 0.075 0.925 17 N -0.735 5.735 18 C -0.255 4.255 19 H 0.092 0.908 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.364 0.636 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -4.848 -15.829 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.101 0.899 4 C -0.006 4.006 5 N -0.344 5.344 6 C 0.321 3.679 7 O -0.433 6.433 8 C -0.184 4.184 9 C -0.187 4.187 10 C 0.398 3.602 11 F -0.164 7.164 12 F -0.166 7.166 13 F -0.165 7.165 14 C -0.056 4.056 15 C 0.071 3.929 16 H 0.093 0.907 17 N -0.376 5.376 18 C -0.385 4.385 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.574 5.574 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.198 0.802 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.240 -5.150 -16.220 17.538 hybrid contribution 0.433 1.258 0.249 1.354 sum 4.673 -3.891 -15.971 17.089 Atomic orbital electron populations 1.21674 0.93625 1.02193 1.01813 1.22569 0.96723 0.99677 0.94730 0.89918 1.21966 0.87487 0.94399 0.96737 1.48488 1.29852 1.43518 1.12564 1.19868 0.83268 0.78954 0.85790 1.90693 1.71344 1.64829 1.16420 1.21596 0.97368 1.00258 0.99147 1.22596 0.94740 1.01307 1.00067 1.20599 0.85119 0.77856 0.76614 1.93204 1.89153 1.75150 1.58848 1.93186 1.85068 1.75251 1.63132 1.93197 1.69242 1.65103 1.88925 1.23526 1.02330 1.01374 0.78382 1.21382 0.92027 0.93713 0.85813 0.90742 1.42641 1.88558 1.03945 1.02467 1.19045 1.43746 0.94004 0.81685 0.88974 1.24674 1.01302 0.97421 0.95094 1.69699 1.55865 1.34325 0.97504 0.86587 0.77867 0.87117 0.77118 1.20911 1.21612 1.20278 0.92441 0.91514 0.92989 0.91829 0.91330 0.87450 0.87281 0.86498 0.86566 0.90532 0.90984 0.80201 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.14 37.15 0.34 -1.32 16 2 C -0.12 -1.59 3.19 -88.65 -0.28 -1.87 16 3 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 4 C 0.12 1.53 6.46 -3.07 -0.02 1.51 16 5 N -0.61 -8.49 3.33 -170.52 -0.57 -9.06 16 6 C 0.53 7.27 7.85 -10.98 -0.09 7.18 16 7 O -0.55 -8.91 16.31 5.56 0.09 -8.82 16 8 C -0.14 -1.52 4.46 -27.88 -0.12 -1.65 16 9 C -0.15 -1.39 4.55 -26.73 -0.12 -1.51 16 10 C 0.45 4.54 3.16 37.16 0.12 4.66 16 11 F -0.18 -2.02 16.80 2.25 0.04 -1.98 16 12 F -0.18 -1.93 17.32 2.25 0.04 -1.90 16 13 F -0.18 -2.01 16.80 2.25 0.04 -1.97 16 14 C 0.07 1.04 6.39 -2.53 -0.02 1.03 16 15 C 0.18 3.04 3.14 -65.64 -0.21 2.83 16 16 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 17 N -0.73 -15.37 5.08 -51.21 -0.26 -15.63 16 18 C -0.26 -6.56 10.47 -15.06 -0.16 -6.72 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 20 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 21 N -0.93 -27.60 13.97 55.49 0.78 -26.83 16 22 Si 0.88 20.65 27.73 -169.99 -4.71 15.93 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 31 H 0.11 1.06 7.80 -51.93 -0.41 0.65 16 32 H 0.11 1.09 7.51 -51.93 -0.39 0.70 16 33 H 0.12 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.12 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.36 7.54 5.58 -40.82 -0.23 7.32 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -30.01 327.83 -5.47 -35.48 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.19 Total: 5.46 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.65 Total: 4.37 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.05 Total: -51.52 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.01 -5.47 -35.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214397398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.037 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds