Wall clock time and date at job start Tue Mar 31 2020 07:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47457 * 180.02562 * 9 8 6 11 11 F 1.39902 * 109.46750 * 59.99913 * 10 9 8 12 12 F 1.39898 * 109.47532 * 180.02562 * 10 9 8 13 13 F 1.39902 * 109.46702 * 300.00529 * 10 9 8 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00339 * 81.07133 * 15 14 5 17 17 N 1.46505 * 111.00202 * 204.91694 * 15 14 5 18 18 C 1.36935 * 120.00217 * 273.54861 * 17 15 14 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00139 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47224 * 90.00046 * 22 20 18 24 24 H 1.48503 * 109.47388 * 210.00158 * 22 20 18 25 25 H 1.48501 * 109.47319 * 330.00053 * 22 20 18 26 26 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 27 27 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 28 28 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 29 29 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 30 30 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 31 31 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 32 32 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 33 33 H 1.08996 * 109.47291 * 300.00257 * 9 8 6 34 34 H 1.09002 * 109.46942 * 60.00365 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 36 36 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 37 37 H 0.96998 * 119.99743 * 93.55096 * 17 15 14 38 38 H 0.97003 * 119.99397 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 6 5.8310 -3.9850 -1.9437 10 6 7.0239 -4.7156 -1.3239 11 9 6.5811 -5.5176 -0.2665 12 9 7.6351 -5.5174 -2.2938 13 9 7.9463 -3.7793 -0.8445 14 6 3.4656 -1.2541 0.6849 15 6 2.0831 -0.7972 1.2139 16 1 1.4480 -1.6542 1.4382 17 7 2.2294 0.0667 2.3880 18 6 2.3264 -0.4860 3.6370 19 1 2.2947 -1.5590 3.7567 20 6 2.4645 0.3326 4.7495 21 7 2.5573 -0.1988 5.9501 22 14 2.5187 2.1882 4.5426 23 1 1.1404 2.7354 4.6199 24 1 3.3485 2.7826 5.6213 25 1 3.1105 2.5221 3.2222 26 1 -0.3633 -1.0272 0.0321 27 1 -0.3634 0.5414 0.8735 28 1 -0.3633 0.4858 -0.9056 29 1 2.3741 -0.1026 -1.9977 30 1 1.3121 -1.4741 -1.5791 31 1 5.8817 -2.3780 -0.5104 32 1 4.8185 -3.7322 -0.0589 33 1 5.1125 -4.7146 -2.3169 34 1 6.1756 -3.3601 -2.7677 35 1 3.7975 -2.1479 1.2131 36 1 4.1987 -0.4550 0.7952 37 1 2.2575 1.0303 2.2805 38 1 2.6534 0.3733 6.7275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214397398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:00 Heat of formation + Delta-G solvation = -204.990275 kcal Electronic energy + Delta-G solvation = -24062.998158 eV Core-core repulsion = 19910.525928 eV Total energy + Delta-G solvation = -4152.472230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.10283 -48.60611 -48.58235 -41.23266 -39.12737 -35.97087 -34.84597 -33.91967 -32.85977 -29.46829 -28.87436 -26.71374 -25.60182 -23.64414 -22.73885 -21.55135 -20.42094 -19.55720 -19.50414 -19.31816 -18.68141 -17.63794 -17.40900 -16.71054 -16.44127 -16.03647 -15.52807 -15.48671 -15.04535 -15.00300 -14.81719 -14.76639 -14.72832 -14.62316 -14.53857 -14.31438 -13.82535 -13.55359 -13.30799 -13.18590 -12.96364 -12.88471 -12.73868 -12.42845 -12.25597 -12.07718 -11.91760 -11.78693 -11.36959 -11.11210 -10.93662 -9.73654 -9.31958 -7.99593 -5.35013 1.42327 1.45042 1.50613 1.52256 1.64410 1.99995 2.51398 2.80438 2.98419 3.08031 3.30147 3.34077 3.64254 3.70277 3.86792 3.91668 3.93150 4.07659 4.34926 4.36254 4.42126 4.56731 4.61592 4.70682 4.77551 4.87764 4.91240 5.09057 5.10473 5.18159 5.32261 5.45942 5.80181 6.23666 6.44215 7.01708 7.09606 7.83007 8.01849 9.21294 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.003993 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.925778 B = 7010.821551 C = 8249.687570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 H 0.090 0.910 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.533 3.467 7 O -0.577 6.577 8 C -0.141 4.141 9 C -0.141 4.141 10 C 0.457 3.543 11 F -0.189 7.189 12 F -0.187 7.187 13 F -0.188 7.188 14 C 0.081 3.919 15 C 0.172 3.828 16 H 0.063 0.937 17 N -0.736 5.736 18 C -0.230 4.230 19 H 0.062 0.938 20 C -0.057 4.057 21 N -0.982 5.982 22 Si 0.949 3.051 23 H -0.280 1.280 24 H -0.302 1.302 25 H -0.247 1.247 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.369 0.631 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -3.866 -17.919 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.005 4.005 5 N -0.345 5.345 6 C 0.323 3.677 7 O -0.457 6.457 8 C -0.181 4.181 9 C -0.179 4.179 10 C 0.403 3.597 11 F -0.170 7.170 12 F -0.168 7.168 13 F -0.170 7.170 14 C -0.045 4.045 15 C 0.062 3.938 16 H 0.081 0.919 17 N -0.378 5.378 18 C -0.361 4.361 19 H 0.080 0.920 20 C -0.249 4.249 21 N -0.632 5.632 22 Si 0.777 3.223 23 H -0.206 1.206 24 H -0.229 1.229 25 H -0.172 1.172 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.203 0.797 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.341 -4.175 -18.386 19.348 hybrid contribution 0.375 0.833 0.824 1.230 sum 4.716 -3.342 -17.562 18.489 Atomic orbital electron populations 1.21665 0.92561 1.02378 1.02470 1.22499 0.97570 0.99494 0.92903 0.89217 1.22016 0.87351 0.94550 0.96595 1.48504 1.30247 1.43792 1.11965 1.20280 0.83541 0.78477 0.85419 1.90686 1.72104 1.65517 1.17442 1.21615 0.96479 1.00507 0.99486 1.22551 0.94378 1.01246 0.99744 1.20641 0.85131 0.77645 0.76323 1.93194 1.89203 1.75386 1.59235 1.93183 1.85132 1.75327 1.63155 1.93189 1.69513 1.65252 1.89007 1.23199 1.00835 1.01347 0.79071 1.21549 0.93122 0.93483 0.85674 0.91896 1.42548 1.88691 1.04565 1.02010 1.18992 1.40808 0.92727 0.83602 0.92022 1.25433 1.02430 1.02317 0.94738 1.69880 1.58830 1.35979 0.98498 0.85503 0.77772 0.81122 0.77915 1.20624 1.22887 1.17166 0.92429 0.92820 0.90481 0.90789 0.90903 0.86471 0.86680 0.85959 0.85822 0.90560 0.90979 0.79692 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.14 71.98 0.66 -2.28 16 2 C -0.11 -2.58 3.19 -9.52 -0.03 -2.61 16 3 H 0.09 2.13 8.00 -2.39 -0.02 2.11 16 4 C 0.12 2.76 6.46 86.73 0.56 3.32 16 5 N -0.61 -15.69 3.33 -811.78 -2.70 -18.39 16 6 C 0.53 13.44 7.85 87.66 0.69 14.13 16 7 O -0.58 -17.39 16.31 -3.03 -0.05 -17.44 16 8 C -0.14 -2.71 4.46 29.85 0.13 -2.58 16 9 C -0.14 -2.37 4.55 30.59 0.14 -2.23 16 10 C 0.46 8.47 3.16 71.98 0.23 8.70 16 11 F -0.19 -3.94 16.80 44.97 0.76 -3.19 16 12 F -0.19 -3.63 17.32 44.97 0.78 -2.85 16 13 F -0.19 -3.83 16.80 44.97 0.76 -3.07 16 14 C 0.08 2.29 6.39 86.86 0.55 2.85 16 15 C 0.17 5.48 3.14 46.47 0.15 5.63 16 16 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 17 N -0.74 -29.81 5.08 -315.95 -1.61 -31.42 16 18 C -0.23 -11.89 10.47 84.03 0.88 -11.01 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 20 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 21 N -0.98 -59.99 13.97 21.65 0.30 -59.69 16 22 Si 0.95 42.29 27.73 68.60 1.90 44.19 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.25 -9.68 6.52 99.48 0.65 -9.03 16 26 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.68 7.82 -2.39 -0.02 1.66 16 31 H 0.12 2.05 7.80 -2.39 -0.02 2.03 16 32 H 0.12 2.10 7.51 -2.39 -0.02 2.08 16 33 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 34 H 0.12 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.08 2.16 7.48 -2.39 -0.02 2.14 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.37 14.36 5.58 -92.71 -0.52 13.84 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -64.34 327.83 5.07 -59.28 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.50 Total: 21.35 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 4.42 Total: 11.22 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.00 Total: -109.49 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.05 Total: -17.44 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 2.29 Total: -9.12 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.90 Total: 44.19 kcal Total: -64.34 5.07 -59.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214397398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.711 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds