Wall clock time and date at job start Tue Mar 31 2020 07:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00246 * 2 1 4 4 O 1.20836 * 119.99800 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00462 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47352 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47146 * 55.00432 * 6 5 3 8 8 C 1.53007 * 109.47223 * 174.99814 * 6 5 3 9 9 O 1.42897 * 109.47496 * 294.99945 * 6 5 3 10 10 C 1.35743 * 117.00313 * 149.99595 * 9 6 5 11 11 C 1.41194 * 120.27970 * 90.00182 * 10 9 6 12 12 C 1.41179 * 120.26617 * 359.97438 * 11 10 9 13 13 H 1.07999 * 120.00175 * 25.11185 * 12 11 10 14 14 C 1.39921 * 119.99913 * 205.11065 * 12 11 10 15 15 N 1.30872 * 120.00044 * 17.40652 * 14 12 11 16 16 Si 1.86799 * 119.99959 * 197.41005 * 14 12 11 17 17 H 1.48504 * 109.46900 * 90.00185 * 16 14 12 18 18 H 1.48502 * 109.47182 * 209.99764 * 16 14 12 19 19 H 1.48499 * 109.47168 * 330.00213 * 16 14 12 20 20 C 1.40768 * 119.46842 * 180.02562 * 11 10 9 21 21 C 1.36486 * 120.02375 * 359.97438 * 20 11 10 22 22 C 1.38770 * 120.58234 * 0.02562 * 21 20 11 23 23 C 1.38708 * 120.53684 * 359.72267 * 22 21 20 24 24 O 1.36010 * 120.02428 * 180.28298 * 23 22 21 25 25 C 1.42895 * 116.99846 * 0.25312 * 24 23 22 26 26 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46592 * 299.99389 * 1 2 3 28 28 H 1.08992 * 109.47600 * 59.99828 * 1 2 3 29 29 H 1.09001 * 109.47197 * 59.99894 * 5 3 2 30 30 H 1.08996 * 109.46987 * 300.00262 * 5 3 2 31 31 H 1.08996 * 109.47122 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.46925 * 300.00297 * 8 6 5 33 33 H 1.09005 * 109.46508 * 59.99867 * 8 6 5 34 34 H 0.96999 * 120.00127 * 180.02562 * 15 14 12 35 35 H 1.08005 * 119.99060 * 180.02562 * 20 11 10 36 36 H 1.08006 * 119.70972 * 180.02562 * 21 20 11 37 37 H 1.08006 * 119.73331 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.46926 * 299.99677 * 25 24 23 39 39 H 1.08997 * 109.47308 * 60.00195 * 25 24 23 40 40 H 1.09004 * 109.47223 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 1 3.5383 3.2570 0.8426 8 6 5.5229 2.8236 0.1254 9 8 3.5887 3.3611 -1.2202 10 6 3.3074 4.6882 -1.1738 11 6 4.3228 5.6400 -1.4118 12 6 5.6393 5.2191 -1.6996 13 1 5.8123 4.2449 -2.1324 14 6 6.7199 6.0641 -1.4239 15 7 6.5682 7.0751 -0.6068 16 14 8.3791 5.7492 -2.2222 17 1 8.4552 6.4823 -3.5114 18 1 9.4601 6.2212 -1.3199 19 1 8.5411 4.2940 -2.4699 20 6 4.0121 7.0119 -1.3589 21 6 2.7378 7.4133 -1.0798 22 6 1.7387 6.4792 -0.8456 23 6 2.0172 5.1214 -0.8969 24 8 1.0287 4.2149 -0.6714 25 6 -0.2741 4.7316 -0.3928 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7805 0.8891 31 1 5.8319 3.8688 0.1255 32 1 5.8367 2.3514 1.0563 33 1 5.9847 2.3085 -0.7170 34 1 7.3172 7.6612 -0.4160 35 1 4.7822 7.7472 -1.5400 36 1 2.5050 8.4673 -1.0408 37 1 0.7349 6.8122 -0.6264 38 1 -0.2352 5.3514 0.5029 39 1 -0.6146 5.3324 -1.2360 40 1 -0.9664 3.9049 -0.2332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:58 Heat of formation + Delta-G solvation = -139.086590 kcal Electronic energy + Delta-G solvation = -25064.439026 eV Core-core repulsion = 21424.388583 eV Total energy + Delta-G solvation = -3640.050443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96070 -38.89166 -37.19448 -36.10180 -35.49454 -33.45571 -32.34944 -29.37518 -28.60996 -28.12457 -26.61429 -26.21183 -24.94306 -21.93341 -20.68775 -20.66428 -19.64520 -17.73268 -17.02745 -16.77170 -16.21233 -15.95433 -15.58540 -15.33013 -14.76203 -14.60570 -13.97346 -13.65050 -13.37031 -13.10028 -12.97538 -12.90971 -12.26487 -11.97295 -11.85065 -11.77662 -11.59208 -11.50936 -11.34555 -11.04765 -10.91954 -10.58831 -10.42414 -10.37961 -10.28696 -10.05087 -9.75019 -9.72752 -9.47583 -9.10609 -8.52462 -7.36659 -6.86362 -6.63321 -4.36798 2.68544 2.81975 2.98986 3.06223 3.09577 3.11111 3.23358 3.89096 4.47774 4.56018 4.82966 5.18810 5.27503 5.34564 5.39173 5.61659 5.65008 5.80774 5.82357 5.87252 5.92226 6.05627 6.12692 6.24320 6.28099 6.33426 6.60771 6.76768 6.86219 6.95213 7.00305 7.16035 7.26692 7.29884 7.72309 7.84203 8.00835 8.11146 8.37884 8.47423 8.57426 8.77814 8.86491 9.30602 10.11035 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.006207 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.886993 B = 4509.680861 C = 5907.967579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.375 6.375 3 C 0.436 3.564 4 O -0.444 6.444 5 C -0.106 4.106 6 C 0.102 3.898 7 H 0.057 0.943 8 C -0.176 4.176 9 O -0.301 6.301 10 C -0.060 4.060 11 C 0.127 3.873 12 C -0.436 4.436 13 H 0.089 0.911 14 C 0.075 3.925 15 N -0.786 5.786 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.259 1.259 20 C -0.185 4.185 21 C -0.076 4.076 22 C -0.325 4.325 23 C 0.140 3.860 24 O -0.276 6.276 25 C 0.038 3.962 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.281 0.719 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -8.481 2.447 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.276 3.724 4 O -0.326 6.326 5 C -0.144 4.144 6 C 0.045 3.955 7 H 0.075 0.925 8 C -0.234 4.234 9 O -0.217 6.217 10 C -0.106 4.106 11 C 0.124 3.876 12 C -0.465 4.465 13 H 0.107 0.893 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.183 1.183 20 C -0.204 4.204 21 C -0.095 4.095 22 C -0.345 4.345 23 C 0.094 3.906 24 O -0.189 6.189 25 C -0.059 4.059 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.221 -8.295 2.416 10.094 hybrid contribution 0.350 0.428 0.033 0.554 sum -4.870 -7.866 2.449 9.571 Atomic orbital electron populations 1.23072 0.77558 1.02570 1.02209 1.86484 1.22546 1.34876 1.85462 1.23945 0.92411 0.81518 0.74495 1.90918 1.66178 1.34546 1.40977 1.21590 0.87873 0.99823 1.05132 1.21911 0.94087 0.89518 0.89960 0.92506 1.22531 0.95307 1.05619 0.99903 1.86017 1.86162 1.20220 1.29310 1.17789 0.89714 0.82984 1.20086 1.17639 0.91926 0.90642 0.87407 1.19527 0.89914 1.02318 1.34760 0.89341 1.25971 1.01408 0.93935 0.93095 1.69868 1.33437 1.13009 1.24766 0.86330 0.80467 0.80240 0.79915 1.19219 1.20349 1.18316 1.20898 0.95134 0.96069 1.08292 1.20216 0.93588 0.96718 0.98960 1.20333 0.99088 0.91807 1.23267 1.19328 0.88200 0.88067 0.94989 1.86481 1.15621 1.31728 1.85056 1.22679 0.85122 0.99073 0.98985 0.89060 0.92507 0.92198 0.87729 0.87788 0.88548 0.93826 0.92591 0.90769 0.86233 0.89357 0.88748 0.94388 0.94497 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.38 -5.56 10.56 -39.24 -0.41 -5.97 16 3 C 0.44 7.52 7.84 36.00 0.28 7.80 16 4 O -0.44 -9.01 10.94 -28.99 -0.32 -9.32 16 5 C -0.11 -1.68 5.52 -27.89 -0.15 -1.83 16 6 C 0.10 2.04 2.33 -26.73 -0.06 1.98 16 7 H 0.06 1.24 7.72 -51.93 -0.40 0.84 16 8 C -0.18 -3.31 8.40 37.16 0.31 -3.00 16 9 O -0.30 -7.21 8.13 -44.11 -0.36 -7.57 16 10 C -0.06 -1.55 5.61 -38.22 -0.21 -1.77 16 11 C 0.13 3.37 5.56 -106.70 -0.59 2.77 16 12 C -0.44 -11.07 5.84 -37.84 -0.22 -11.29 16 13 H 0.09 2.23 7.16 -52.49 -0.38 1.86 16 14 C 0.07 1.78 5.14 -17.33 -0.09 1.69 16 15 N -0.79 -19.42 10.97 55.55 0.61 -18.81 16 16 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 C -0.18 -4.78 8.63 -39.26 -0.34 -5.12 16 21 C -0.08 -1.83 9.96 -40.02 -0.40 -2.23 16 22 C -0.32 -7.67 9.05 -39.21 -0.35 -8.03 16 23 C 0.14 3.46 6.69 -39.17 -0.26 3.20 16 24 O -0.28 -6.28 6.05 -49.97 -0.30 -6.58 16 25 C 0.04 0.67 9.81 101.05 0.99 1.67 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 2.14 5.75 -51.93 -0.30 1.84 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 35 H 0.12 3.15 6.18 -52.48 -0.32 2.82 16 36 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.09 2.00 6.27 -52.48 -0.33 1.67 16 38 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 39 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -29.76 328.38 -6.36 -36.13 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.46 Total: 6.76 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.04 Total: -12.62 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.39 Total: -29.44 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.76 -6.36 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.959 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds