Wall clock time and date at job start Tue Mar 31 2020 07:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34222 * 117.00246 * 2 1 4 4 O 1.20836 * 119.99800 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00462 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47352 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47146 * 55.00432 * 6 5 3 8 8 C 1.53007 * 109.47223 * 174.99814 * 6 5 3 9 9 O 1.42897 * 109.47496 * 294.99945 * 6 5 3 10 10 C 1.35743 * 117.00313 * 149.99595 * 9 6 5 11 11 C 1.41194 * 120.27970 * 90.00182 * 10 9 6 12 12 C 1.41179 * 120.26617 * 359.97438 * 11 10 9 13 13 H 1.07999 * 120.00175 * 25.11185 * 12 11 10 14 14 C 1.39921 * 119.99913 * 205.11065 * 12 11 10 15 15 N 1.30872 * 120.00044 * 17.40652 * 14 12 11 16 16 Si 1.86799 * 119.99959 * 197.41005 * 14 12 11 17 17 H 1.48504 * 109.46900 * 90.00185 * 16 14 12 18 18 H 1.48502 * 109.47182 * 209.99764 * 16 14 12 19 19 H 1.48499 * 109.47168 * 330.00213 * 16 14 12 20 20 C 1.40768 * 119.46842 * 180.02562 * 11 10 9 21 21 C 1.36486 * 120.02375 * 359.97438 * 20 11 10 22 22 C 1.38770 * 120.58234 * 0.02562 * 21 20 11 23 23 C 1.38708 * 120.53684 * 359.72267 * 22 21 20 24 24 O 1.36010 * 120.02428 * 180.28298 * 23 22 21 25 25 C 1.42895 * 116.99846 * 0.25312 * 24 23 22 26 26 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46592 * 299.99389 * 1 2 3 28 28 H 1.08992 * 109.47600 * 59.99828 * 1 2 3 29 29 H 1.09001 * 109.47197 * 59.99894 * 5 3 2 30 30 H 1.08996 * 109.46987 * 300.00262 * 5 3 2 31 31 H 1.08996 * 109.47122 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.46925 * 300.00297 * 8 6 5 33 33 H 1.09005 * 109.46508 * 59.99867 * 8 6 5 34 34 H 0.96999 * 120.00127 * 180.02562 * 15 14 12 35 35 H 1.08005 * 119.99060 * 180.02562 * 20 11 10 36 36 H 1.08006 * 119.70972 * 180.02562 * 21 20 11 37 37 H 1.08006 * 119.73331 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.46926 * 299.99677 * 25 24 23 39 39 H 1.08997 * 109.47308 * 60.00195 * 25 24 23 40 40 H 1.09004 * 109.47223 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 1 3.5383 3.2570 0.8426 8 6 5.5229 2.8236 0.1254 9 8 3.5887 3.3611 -1.2202 10 6 3.3074 4.6882 -1.1738 11 6 4.3228 5.6400 -1.4118 12 6 5.6393 5.2191 -1.6996 13 1 5.8123 4.2449 -2.1324 14 6 6.7199 6.0641 -1.4239 15 7 6.5682 7.0751 -0.6068 16 14 8.3791 5.7492 -2.2222 17 1 8.4552 6.4823 -3.5114 18 1 9.4601 6.2212 -1.3199 19 1 8.5411 4.2940 -2.4699 20 6 4.0121 7.0119 -1.3589 21 6 2.7378 7.4133 -1.0798 22 6 1.7387 6.4792 -0.8456 23 6 2.0172 5.1214 -0.8969 24 8 1.0287 4.2149 -0.6714 25 6 -0.2741 4.7316 -0.3928 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7805 0.8891 31 1 5.8319 3.8688 0.1255 32 1 5.8367 2.3514 1.0563 33 1 5.9847 2.3085 -0.7170 34 1 7.3172 7.6612 -0.4160 35 1 4.7822 7.7472 -1.5400 36 1 2.5050 8.4673 -1.0408 37 1 0.7349 6.8122 -0.6264 38 1 -0.2352 5.3514 0.5029 39 1 -0.6146 5.3324 -1.2360 40 1 -0.9664 3.9049 -0.2332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:57 Heat of formation + Delta-G solvation = -154.861245 kcal Electronic energy + Delta-G solvation = -25065.123066 eV Core-core repulsion = 21424.388583 eV Total energy + Delta-G solvation = -3640.734483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29737 -40.61638 -38.84058 -37.71033 -36.99232 -35.29000 -33.89018 -31.25024 -30.09906 -29.66716 -27.96827 -27.64184 -26.76565 -23.49364 -22.52351 -22.27519 -21.14080 -19.52403 -18.50662 -18.28935 -17.53218 -17.50528 -17.14240 -17.01099 -16.47962 -16.19694 -15.57038 -15.24933 -14.92064 -14.68236 -14.40141 -14.28742 -13.81480 -13.55033 -13.49475 -13.28692 -12.98778 -12.84207 -12.78635 -12.65092 -12.51511 -12.28914 -12.14011 -11.92615 -11.70483 -11.56823 -11.47904 -11.25533 -11.12375 -10.90928 -10.27625 -9.26871 -8.68597 -8.48360 -6.27632 0.86890 1.14403 1.41989 1.51479 1.54265 1.55708 1.95481 2.22290 2.71009 2.87842 3.16618 3.76577 3.93421 4.12325 4.35120 4.38084 4.40920 4.42381 4.47461 4.51777 4.53468 4.58954 4.67740 4.77069 4.77856 4.82003 4.97860 5.08145 5.13120 5.25926 5.32476 5.45063 5.59697 5.69019 5.84649 5.99185 6.12397 6.18285 6.56916 6.79727 6.88097 6.99404 7.10269 7.47912 8.32350 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.006207 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.886993 B = 4509.680861 C = 5907.967579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.435 3.565 4 O -0.481 6.481 5 C -0.100 4.100 6 C 0.101 3.899 7 H 0.029 0.971 8 C -0.168 4.168 9 O -0.317 6.317 10 C -0.078 4.078 11 C 0.100 3.900 12 C -0.451 4.451 13 H 0.081 0.919 14 C 0.041 3.959 15 N -0.814 5.814 16 Si 0.974 3.026 17 H -0.265 1.265 18 H -0.267 1.267 19 H -0.254 1.254 20 C -0.210 4.210 21 C -0.079 4.079 22 C -0.329 4.329 23 C 0.128 3.872 24 O -0.288 6.288 25 C 0.031 3.969 26 H 0.129 0.871 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.289 0.711 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -10.114 2.719 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 C 0.277 3.723 4 O -0.366 6.366 5 C -0.137 4.137 6 C 0.045 3.955 7 H 0.047 0.953 8 C -0.225 4.225 9 O -0.234 6.234 10 C -0.124 4.124 11 C 0.096 3.904 12 C -0.479 4.479 13 H 0.099 0.901 14 C -0.176 4.176 15 N -0.439 5.439 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.178 1.178 20 C -0.230 4.230 21 C -0.097 4.097 22 C -0.349 4.349 23 C 0.082 3.918 24 O -0.200 6.200 25 C -0.064 4.064 26 H 0.147 0.853 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.201 -9.948 2.699 11.546 hybrid contribution 0.189 0.855 0.014 0.876 sum -5.012 -9.093 2.714 10.732 Atomic orbital electron populations 1.23365 0.75716 1.04970 1.01848 1.86467 1.24318 1.33369 1.84857 1.24174 0.92948 0.81636 0.73531 1.90902 1.67023 1.35831 1.42839 1.21580 0.87444 0.96960 1.07758 1.22011 0.94578 0.91453 0.87487 0.95292 1.22394 0.94519 1.03592 1.02026 1.85918 1.86490 1.19492 1.31518 1.18016 0.90355 0.83695 1.20288 1.17990 0.92942 0.91231 0.88190 1.19555 0.90324 1.02501 1.35563 0.90100 1.26711 1.04559 0.93328 0.92954 1.69910 1.34897 1.13707 1.25347 0.85306 0.76067 0.80243 0.78865 1.19036 1.19191 1.17793 1.20898 0.95822 0.95866 1.10397 1.20495 0.93017 0.98205 0.98025 1.20614 1.00134 0.91446 1.22712 1.19523 0.88676 0.88840 0.94784 1.86481 1.16851 1.31857 1.84814 1.22946 0.83448 1.00485 0.99556 0.85283 0.92413 0.93073 0.86179 0.83810 0.92345 0.90368 0.91838 0.89983 0.87421 0.86901 0.86266 0.93833 0.93504 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.92 16 2 O -0.37 -10.22 10.56 -51.34 -0.54 -10.76 16 3 C 0.44 14.46 7.84 71.23 0.56 15.02 16 4 O -0.48 -19.36 10.94 31.72 0.35 -19.01 16 5 C -0.10 -2.98 5.52 29.85 0.16 -2.82 16 6 C 0.10 4.05 2.33 30.60 0.07 4.12 16 7 H 0.03 1.30 7.72 -2.39 -0.02 1.28 16 8 C -0.17 -6.23 8.40 71.98 0.60 -5.63 16 9 O -0.32 -15.55 8.13 -66.60 -0.54 -16.09 16 10 C -0.08 -4.15 5.61 23.15 0.13 -4.02 16 11 C 0.10 5.48 5.56 -21.21 -0.12 5.36 16 12 C -0.45 -23.60 5.84 23.40 0.14 -23.47 16 13 H 0.08 4.21 7.16 -2.91 -0.02 4.19 16 14 C 0.04 1.98 5.14 85.24 0.44 2.42 16 15 N -0.81 -41.06 10.97 21.83 0.24 -40.82 16 16 Si 0.97 37.03 29.59 68.60 2.03 39.06 16 17 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 20 C -0.21 -11.28 8.63 22.48 0.19 -11.09 16 21 C -0.08 -3.83 9.96 21.99 0.22 -3.62 16 22 C -0.33 -15.56 9.05 22.51 0.20 -15.36 16 23 C 0.13 6.43 6.69 22.54 0.15 6.58 16 24 O -0.29 -13.06 6.05 -64.79 -0.39 -13.46 16 25 C 0.03 1.07 9.81 113.37 1.11 2.19 16 26 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 28 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.06 2.64 5.75 -2.39 -0.01 2.63 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 35 H 0.11 5.91 6.18 -2.91 -0.02 5.89 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 37 H 0.12 4.90 6.27 -2.91 -0.02 4.88 16 38 H 0.04 1.44 7.65 -2.39 -0.02 1.42 16 39 H 0.05 1.51 7.67 -2.39 -0.02 1.49 16 40 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 Total: -1.00 -66.83 328.38 7.25 -59.58 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.05 Total: 29.88 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 5.06 Total: -28.37 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.24 Total: -40.82 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -1.13 Total: -59.32 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -66.83 7.25 -59.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.282 kcal (2) G-P(sol) polarization free energy of solvation -66.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds