Wall clock time and date at job start Tue Mar 31 2020 07:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47240 * 2 1 4 4 C 1.34235 * 116.99695 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00134 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99583 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46624 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47856 * 54.99819 * 7 6 4 9 9 C 1.50702 * 109.46994 * 175.00136 * 7 6 4 10 10 H 1.08004 * 120.00101 * 240.00337 * 9 7 6 11 11 C 1.37875 * 120.00032 * 59.99338 * 9 7 6 12 12 N 1.31515 * 120.00255 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99965 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47102 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47114 * 120.00268 * 13 11 9 16 16 H 1.48497 * 109.46937 * 240.00347 * 13 11 9 17 17 O 1.42901 * 109.47222 * 294.99649 * 7 6 4 18 18 C 1.35887 * 117.00238 * 156.05128 * 17 7 6 19 19 C 1.38792 * 120.03137 * 184.90734 * 18 17 7 20 20 C 1.38162 * 120.05795 * 179.69769 * 19 18 17 21 21 C 1.50694 * 119.94457 * 180.29941 * 20 19 18 22 22 C 1.38192 * 120.10439 * 0.60229 * 20 19 18 23 23 C 1.38746 * 120.05899 * 359.67508 * 22 20 19 24 24 O 1.35898 * 120.03011 * 180.02562 * 23 22 20 25 25 C 1.38622 * 120.02783 * 5.18575 * 18 17 7 26 26 H 1.09007 * 109.46738 * 59.99988 * 1 2 3 27 27 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46887 * 300.00506 * 1 2 3 29 29 H 1.09001 * 109.47332 * 239.99781 * 2 1 3 30 30 H 1.08997 * 109.46751 * 120.00007 * 2 1 3 31 31 H 1.09002 * 109.46697 * 299.99583 * 6 4 3 32 32 H 1.08998 * 109.46975 * 60.00080 * 6 4 3 33 33 H 0.97002 * 119.99910 * 179.97438 * 12 11 9 34 34 H 1.07999 * 119.97195 * 0.02562 * 19 18 17 35 35 H 1.08995 * 109.47367 * 270.30027 * 21 20 19 36 36 H 1.09003 * 109.47679 * 30.30645 * 21 20 19 37 37 H 1.09003 * 109.47117 * 150.29957 * 21 20 19 38 38 H 1.08006 * 119.97183 * 179.69953 * 22 20 19 39 39 H 0.96700 * 114.00166 * 269.98189 * 24 23 22 40 40 H 1.07995 * 120.05090 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8571 0.0001 8 1 5.7809 2.2491 -0.8413 9 6 6.0246 4.2442 -0.1242 10 1 6.6594 4.4923 -0.9620 11 6 5.7408 5.1967 0.8314 12 7 4.9681 4.8946 1.8518 13 14 6.4540 6.9163 0.6769 14 1 7.2849 6.9991 -0.5512 15 1 5.3491 7.9049 0.5952 16 1 7.2957 7.2116 1.8641 17 8 5.8945 2.2642 1.2215 18 6 7.1136 1.6641 1.2070 19 6 7.5646 0.9803 2.3275 20 6 8.8013 0.3647 2.3112 21 6 9.2856 -0.3828 3.5269 22 6 9.5976 0.4385 1.1842 23 6 9.1538 1.1257 0.0635 24 8 9.9371 1.1975 -1.0446 25 6 7.9104 1.7392 0.0752 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5853 3.4689 -0.8905 32 1 3.5845 3.4700 0.8895 33 1 4.7688 5.5646 2.5244 34 1 6.9460 0.9249 3.2110 35 1 9.8310 0.2991 4.1793 36 1 8.4314 -0.7947 4.0644 37 1 9.9446 -1.1935 3.2163 38 1 10.5661 -0.0394 1.1756 39 1 10.5322 1.9596 -1.0570 40 1 7.5633 2.2749 -0.7959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227471925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:53 Heat of formation + Delta-G solvation = -155.010800 kcal Electronic energy + Delta-G solvation = -24041.049878 eV Core-core repulsion = 20400.308910 eV Total energy + Delta-G solvation = -3640.740968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86261 -39.32427 -37.50896 -36.16913 -35.68916 -33.28286 -31.60326 -31.19216 -30.34760 -28.45721 -26.74506 -26.01475 -23.33211 -22.19105 -21.71457 -20.70205 -19.62735 -17.80464 -17.23505 -16.68528 -16.19060 -15.93956 -15.50961 -15.26002 -15.13247 -14.71246 -14.29812 -13.82274 -13.53661 -13.17166 -13.04011 -12.70148 -12.57934 -12.33188 -12.20223 -12.16879 -11.80165 -11.46541 -11.36514 -11.19476 -11.07510 -10.93105 -10.78478 -10.66870 -10.29847 -10.13805 -10.04343 -9.72323 -9.40093 -9.14944 -8.79254 -7.94491 -7.13315 -6.26995 -4.47500 1.92992 2.22442 3.01213 3.14637 3.24957 3.27929 3.32246 4.21122 4.33877 4.48448 4.79153 5.08885 5.09975 5.15732 5.38423 5.40692 5.47990 5.61665 5.77108 5.88123 5.89934 5.91727 5.97277 6.07155 6.08479 6.15162 6.29023 6.37209 6.44842 6.56178 6.75076 6.97819 7.08834 7.14062 7.15120 7.28313 7.51972 7.63299 7.84484 8.14185 8.46311 8.53908 8.86954 9.30429 10.74302 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.006503 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.784138 B = 4304.482566 C = 6187.233460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.513 6.513 6 C -0.101 4.101 7 C 0.223 3.777 8 H 0.033 0.967 9 C -0.560 4.560 10 H 0.068 0.932 11 C 0.085 3.915 12 N -0.857 5.857 13 Si 0.896 3.104 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 O -0.285 6.285 18 C 0.204 3.796 19 C -0.184 4.184 20 C -0.043 4.043 21 C -0.107 4.107 22 C -0.213 4.213 23 C 0.135 3.865 24 O -0.505 6.505 25 C -0.232 4.232 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.267 0.733 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.384 0.616 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -6.045 -0.376 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.138 4.138 7 C 0.169 3.831 8 H 0.051 0.949 9 C -0.597 4.597 10 H 0.087 0.913 11 C -0.122 4.122 12 N -0.492 5.492 13 Si 0.723 3.277 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.207 1.207 17 O -0.196 6.196 18 C 0.155 3.845 19 C -0.203 4.203 20 C -0.044 4.044 21 C -0.164 4.164 22 C -0.232 4.232 23 C 0.091 3.909 24 O -0.314 6.314 25 C -0.252 4.252 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.239 0.761 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.916 -6.781 -0.219 6.846 hybrid contribution 0.676 1.313 -0.112 1.481 sum -0.240 -5.468 -0.331 5.483 Atomic orbital electron populations 1.21778 0.93295 1.02326 1.03314 1.22857 0.94843 0.81781 1.02062 1.86574 1.26130 1.30997 1.84764 1.24889 0.79515 0.94309 0.71273 1.90608 1.60185 1.43595 1.45687 1.21824 0.96551 0.88195 1.07249 1.19820 0.88726 0.92571 0.82014 0.94883 1.21442 1.32882 0.94917 1.10451 0.91336 1.25044 0.93757 0.99018 0.94386 1.69872 1.34255 1.34365 1.10755 0.86473 0.79204 0.83572 0.78467 1.19463 1.20549 1.20656 1.86231 1.28489 1.65865 1.39021 1.18776 0.85951 0.87789 0.92028 1.20243 0.97351 1.04106 0.98552 1.19322 0.93345 0.96848 0.94859 1.20715 1.01170 0.99124 0.95365 1.20806 1.01248 1.07793 0.93372 1.18188 0.90472 0.96753 0.85474 1.84751 1.55445 1.50863 1.40387 1.21580 0.96370 1.06652 1.00554 0.91723 0.90838 0.91596 0.91880 0.91724 0.87916 0.84193 0.92274 0.86112 0.91454 0.91700 0.91963 0.86734 0.76071 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.80 10.22 -39.27 -0.40 -7.20 16 4 C 0.46 9.75 7.84 36.01 0.28 10.03 16 5 O -0.51 -12.12 15.17 -24.05 -0.36 -12.49 16 6 C -0.10 -2.24 5.22 -27.88 -0.15 -2.39 16 7 C 0.22 5.44 1.35 -27.88 -0.04 5.40 16 8 H 0.03 0.81 6.18 -51.93 -0.32 0.49 16 9 C -0.56 -14.19 7.92 -34.44 -0.27 -14.46 16 10 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 11 C 0.09 2.16 5.24 -17.82 -0.09 2.07 16 12 N -0.86 -22.39 10.93 55.43 0.61 -21.79 16 13 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 O -0.29 -7.30 8.43 -33.81 -0.29 -7.58 16 18 C 0.20 4.82 6.58 -39.23 -0.26 4.56 16 19 C -0.18 -3.85 9.64 -39.40 -0.38 -4.23 16 20 C -0.04 -0.78 5.88 -104.67 -0.61 -1.40 16 21 C -0.11 -1.45 10.01 36.00 0.36 -1.09 16 22 C -0.21 -3.84 9.63 -39.41 -0.38 -4.22 16 23 C 0.14 2.65 6.70 -39.24 -0.26 2.39 16 24 O -0.50 -8.64 13.50 -19.42 -0.26 -8.90 16 25 C -0.23 -5.17 8.63 -39.28 -0.34 -5.51 16 26 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 32 H 0.14 3.37 6.22 -51.93 -0.32 3.05 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 34 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.38 4.66 9.06 45.56 0.41 5.07 16 40 H 0.14 3.14 5.67 -52.49 -0.30 2.85 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -30.32 342.74 -6.81 -37.13 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.72 Total: 9.92 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.53 Total: -9.00 kcal Atomic # 7 Polarization: -22.39 SS G_CDS: 0.61 Total: -21.79 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.31 Total: -36.18 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.32 -6.81 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227471925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.881 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds