Wall clock time and date at job start Tue Mar 31 2020 07:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47240 * 2 1 4 4 C 1.34235 * 116.99695 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00134 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99583 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46624 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47856 * 54.99819 * 7 6 4 9 9 C 1.50702 * 109.46994 * 175.00136 * 7 6 4 10 10 H 1.08004 * 120.00101 * 240.00337 * 9 7 6 11 11 C 1.37875 * 120.00032 * 59.99338 * 9 7 6 12 12 N 1.31515 * 120.00255 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99965 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47102 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47114 * 120.00268 * 13 11 9 16 16 H 1.48497 * 109.46937 * 240.00347 * 13 11 9 17 17 O 1.42901 * 109.47222 * 294.99649 * 7 6 4 18 18 C 1.35887 * 117.00238 * 156.05128 * 17 7 6 19 19 C 1.38792 * 120.03137 * 184.90734 * 18 17 7 20 20 C 1.38162 * 120.05795 * 179.69769 * 19 18 17 21 21 C 1.50694 * 119.94457 * 180.29941 * 20 19 18 22 22 C 1.38192 * 120.10439 * 0.60229 * 20 19 18 23 23 C 1.38746 * 120.05899 * 359.67508 * 22 20 19 24 24 O 1.35898 * 120.03011 * 180.02562 * 23 22 20 25 25 C 1.38622 * 120.02783 * 5.18575 * 18 17 7 26 26 H 1.09007 * 109.46738 * 59.99988 * 1 2 3 27 27 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46887 * 300.00506 * 1 2 3 29 29 H 1.09001 * 109.47332 * 239.99781 * 2 1 3 30 30 H 1.08997 * 109.46751 * 120.00007 * 2 1 3 31 31 H 1.09002 * 109.46697 * 299.99583 * 6 4 3 32 32 H 1.08998 * 109.46975 * 60.00080 * 6 4 3 33 33 H 0.97002 * 119.99910 * 179.97438 * 12 11 9 34 34 H 1.07999 * 119.97195 * 0.02562 * 19 18 17 35 35 H 1.08995 * 109.47367 * 270.30027 * 21 20 19 36 36 H 1.09003 * 109.47679 * 30.30645 * 21 20 19 37 37 H 1.09003 * 109.47117 * 150.29957 * 21 20 19 38 38 H 1.08006 * 119.97183 * 179.69953 * 22 20 19 39 39 H 0.96700 * 114.00166 * 269.98189 * 24 23 22 40 40 H 1.07995 * 120.05090 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8571 0.0001 8 1 5.7809 2.2491 -0.8413 9 6 6.0246 4.2442 -0.1242 10 1 6.6594 4.4923 -0.9620 11 6 5.7408 5.1967 0.8314 12 7 4.9681 4.8946 1.8518 13 14 6.4540 6.9163 0.6769 14 1 7.2849 6.9991 -0.5512 15 1 5.3491 7.9049 0.5952 16 1 7.2957 7.2116 1.8641 17 8 5.8945 2.2642 1.2215 18 6 7.1136 1.6641 1.2070 19 6 7.5646 0.9803 2.3275 20 6 8.8013 0.3647 2.3112 21 6 9.2856 -0.3828 3.5269 22 6 9.5976 0.4385 1.1842 23 6 9.1538 1.1257 0.0635 24 8 9.9371 1.1975 -1.0446 25 6 7.9104 1.7392 0.0752 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5853 3.4689 -0.8905 32 1 3.5845 3.4700 0.8895 33 1 4.7688 5.5646 2.5244 34 1 6.9460 0.9249 3.2110 35 1 9.8310 0.2991 4.1793 36 1 8.4314 -0.7947 4.0644 37 1 9.9446 -1.1935 3.2163 38 1 10.5661 -0.0394 1.1756 39 1 10.5322 1.9596 -1.0570 40 1 7.5633 2.2749 -0.7959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227471925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:52 Heat of formation + Delta-G solvation = -173.296650 kcal Electronic energy + Delta-G solvation = -24041.842812 eV Core-core repulsion = 20400.308910 eV Total energy + Delta-G solvation = -3641.533902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52813 -40.90329 -39.13882 -37.69056 -37.25800 -35.14311 -32.99140 -32.59426 -31.99032 -30.03726 -28.39906 -27.57169 -24.84326 -23.63207 -23.26528 -22.26356 -21.32209 -19.38904 -18.93831 -18.35924 -17.79447 -17.50055 -17.21004 -16.87058 -16.71148 -16.43614 -15.83839 -15.28739 -15.15898 -14.53084 -14.44002 -14.20234 -13.88044 -13.85321 -13.63715 -13.41464 -13.28088 -12.96951 -12.87478 -12.70649 -12.54953 -12.47577 -12.44094 -12.37449 -11.94086 -11.52798 -11.50774 -11.47551 -11.24494 -10.93907 -10.71573 -9.47678 -8.81617 -8.18975 -6.46300 0.37927 0.66456 1.29152 1.39568 1.43711 1.53761 1.81544 2.37030 2.74330 2.81161 3.19821 3.37084 3.93030 3.99318 4.03176 4.12210 4.26861 4.33622 4.38652 4.45469 4.46977 4.51476 4.63675 4.77005 4.85900 4.88105 4.91285 4.92577 5.12554 5.14421 5.20763 5.30680 5.49391 5.52954 5.62249 5.65796 5.71314 5.93052 5.98793 6.53217 6.84402 6.86405 7.05382 7.35120 8.81750 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.006503 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.784138 B = 4304.482566 C = 6187.233460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.097 4.097 7 C 0.225 3.775 8 H 0.018 0.982 9 C -0.572 4.572 10 H 0.062 0.938 11 C 0.047 3.953 12 N -0.881 5.881 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.284 1.284 17 O -0.309 6.309 18 C 0.168 3.832 19 C -0.205 4.205 20 C -0.033 4.033 21 C -0.105 4.105 22 C -0.207 4.207 23 C 0.139 3.861 24 O -0.507 6.507 25 C -0.258 4.258 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.269 0.731 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.408 0.592 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -6.813 0.011 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.134 4.134 7 C 0.171 3.829 8 H 0.036 0.964 9 C -0.609 4.609 10 H 0.080 0.920 11 C -0.158 4.158 12 N -0.517 5.517 13 Si 0.781 3.219 14 H -0.192 1.192 15 H -0.195 1.195 16 H -0.210 1.210 17 O -0.222 6.222 18 C 0.119 3.881 19 C -0.223 4.223 20 C -0.033 4.033 21 C -0.161 4.161 22 C -0.225 4.225 23 C 0.095 3.905 24 O -0.320 6.320 25 C -0.277 4.277 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.169 0.831 39 H 0.266 0.734 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.034 -7.541 0.157 7.542 hybrid contribution 0.437 1.425 -0.254 1.512 sum 0.470 -6.115 -0.097 6.134 Atomic orbital electron populations 1.21807 0.89789 1.04470 1.03731 1.23287 0.97537 0.79694 1.02036 1.86547 1.24175 1.33545 1.84035 1.24567 0.80388 0.93504 0.70710 1.90589 1.61092 1.44229 1.47068 1.21669 0.95619 0.89020 1.07127 1.19741 0.89755 0.91873 0.81532 0.96379 1.21566 1.33105 0.95706 1.10513 0.92010 1.25679 0.94023 1.02131 0.94003 1.69982 1.35078 1.35339 1.11257 0.85548 0.78628 0.79668 0.78068 1.19217 1.19492 1.21027 1.86165 1.29876 1.66871 1.39264 1.19219 0.85871 0.89369 0.93621 1.20481 0.98970 1.05024 0.97864 1.19845 0.91702 0.95210 0.96562 1.20821 1.02059 0.99689 0.93556 1.21202 1.02425 1.06571 0.92302 1.18288 0.89755 0.95990 0.86486 1.84685 1.55523 1.52205 1.39580 1.21539 0.97962 1.08356 0.99847 0.91015 0.87773 0.91456 0.91557 0.92240 0.86364 0.85832 0.92189 0.86272 0.89624 0.91024 0.89384 0.83147 0.73354 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.29 71.98 0.74 -2.07 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.37 -13.70 10.22 -51.46 -0.53 -14.23 16 4 C 0.46 20.51 7.84 71.24 0.56 21.07 16 5 O -0.54 -26.54 15.17 27.04 0.41 -26.13 16 6 C -0.10 -4.51 5.22 29.85 0.16 -4.35 16 7 C 0.23 11.58 1.35 29.85 0.04 11.62 16 8 H 0.02 0.96 6.18 -2.39 -0.01 0.95 16 9 C -0.57 -30.10 7.92 25.60 0.20 -29.90 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 11 C 0.05 2.41 5.24 84.65 0.44 2.85 16 12 N -0.88 -47.24 10.93 21.45 0.23 -47.01 16 13 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 O -0.31 -16.69 8.43 -78.49 -0.66 -17.35 16 18 C 0.17 8.23 6.58 22.49 0.15 8.38 16 19 C -0.20 -8.69 9.64 22.38 0.22 -8.48 16 20 C -0.03 -1.12 5.88 -19.90 -0.12 -1.24 16 21 C -0.10 -2.47 10.01 71.23 0.71 -1.76 16 22 C -0.21 -6.91 9.63 22.38 0.22 -6.69 16 23 C 0.14 5.36 6.70 22.49 0.15 5.51 16 24 O -0.51 -16.57 13.50 -92.40 -1.25 -17.82 16 25 C -0.26 -11.88 8.63 22.46 0.19 -11.69 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 30 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.12 4.95 8.14 -2.39 -0.02 4.93 16 32 H 0.12 6.22 6.22 -2.39 -0.01 6.21 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 37 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 38 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.41 9.10 9.06 -74.06 -0.67 8.43 16 40 H 0.12 5.74 5.67 -2.91 -0.02 5.72 16 Total: -1.00 -67.74 342.74 4.73 -63.00 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.39 Total: 31.36 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.11 Total: -14.89 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.23 Total: -47.01 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -2.02 Total: -75.53 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -67.74 4.73 -63.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227471925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.293 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds