Wall clock time and date at job start Tue Mar 31 2020 07:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36940 * 136.05968 * 321.99137 * 8 4 3 10 10 H 1.07996 * 119.99816 * 355.15134 * 9 8 4 11 11 C 1.38806 * 119.99880 * 175.14672 * 9 8 4 12 12 N 1.31621 * 120.00131 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00058 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47099 * 59.99996 * 13 11 9 15 15 H 1.48502 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46878 * 299.99851 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 C 1.53000 * 109.47349 * 179.97438 * 19 17 2 21 21 C 1.52999 * 109.47287 * 179.97438 * 20 19 17 22 22 F 1.39894 * 109.47075 * 60.00311 * 21 20 19 23 23 F 1.39906 * 109.47121 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46940 * 299.99984 * 21 20 19 25 25 H 1.09006 * 109.47338 * 95.23610 * 1 2 3 26 26 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 27 27 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 28 28 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 29 29 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 30 30 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 31 31 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 32 32 H 1.08996 * 113.47291 * 271.29559 * 7 6 4 33 33 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 34 34 H 0.97004 * 119.99834 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 36 36 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 37 37 H 1.08992 * 109.47307 * 300.00687 * 20 19 17 38 38 H 1.09013 * 109.46521 * 60.00071 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2738 -0.8101 10 1 2.2091 4.3618 0.0204 11 6 3.7145 5.3406 -1.1491 12 7 4.5486 5.2334 -2.1616 13 14 3.6355 6.9284 -0.1682 14 1 3.9749 6.6512 1.2506 15 1 4.6043 7.9048 -0.7279 16 1 2.2637 7.4917 -0.2481 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 6 2.3797 -3.6352 -0.0018 21 6 1.6148 -4.9602 -0.0012 22 9 0.8093 -5.0342 -1.1426 23 9 2.5239 -6.0236 -0.0018 24 9 0.8117 -5.0345 1.1420 25 1 -0.3634 -0.0938 -1.0234 26 1 -0.3633 -0.8394 0.5929 27 1 -0.3633 0.9331 0.4305 28 1 3.1872 1.1169 0.4307 29 1 1.6520 2.0031 0.5928 30 1 4.3946 0.9483 -1.5043 31 1 3.3410 0.4522 -2.9057 32 1 3.0847 2.7790 -3.6504 33 1 4.6765 3.0178 -2.8116 34 1 5.1220 5.9791 -2.3987 35 1 0.7591 -2.5303 0.8897 36 1 0.7585 -2.5298 -0.8902 37 1 3.0057 -3.5770 -0.8921 38 1 3.0071 -3.5778 0.8879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231411172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:04 Heat of formation + Delta-G solvation = -135.383932 kcal Electronic energy + Delta-G solvation = -24082.988414 eV Core-core repulsion = 19933.534542 eV Total energy + Delta-G solvation = -4149.453873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.35705 -47.84845 -47.83804 -39.96632 -37.96896 -35.34270 -33.97493 -32.17970 -29.06897 -27.88249 -27.24438 -25.95832 -23.39982 -23.09052 -21.84489 -19.36365 -19.12547 -18.82216 -18.43583 -17.86512 -16.84165 -16.29254 -16.11070 -15.87573 -15.02326 -14.74878 -14.65791 -14.28276 -14.19199 -14.00005 -13.98319 -13.90888 -13.54563 -13.34955 -12.86781 -12.75712 -12.58600 -12.22802 -11.95436 -11.91004 -11.68582 -11.47522 -11.06079 -10.84590 -10.72985 -10.42409 -9.87386 -9.78396 -9.76172 -9.45759 -8.76898 -8.33791 -6.85810 -5.74512 -3.08798 2.45908 2.66044 3.04332 3.39138 3.42827 3.44765 3.58354 3.75784 3.81317 4.42750 4.46177 4.63512 4.66390 4.98038 5.14344 5.26267 5.30046 5.39915 5.47762 5.50466 5.60926 5.64918 5.87275 5.99731 6.08030 6.40437 6.50445 6.63915 6.77271 6.81055 7.27121 7.44200 7.53495 7.62583 8.01126 8.23142 9.03787 9.71559 10.66765 11.41822 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.003073 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.123326 B = 9110.309494 C = 9377.679271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.156 4.156 7 C 0.146 3.854 8 N -0.601 5.601 9 C -0.220 4.220 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.917 5.917 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.515 3.485 18 O -0.532 6.532 19 C -0.145 4.145 20 C -0.151 4.151 21 C 0.452 3.548 22 F -0.184 7.184 23 F -0.184 7.184 24 F -0.185 7.185 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.075 0.925 34 H 0.254 0.746 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 -19.159 4.264 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C -0.009 4.009 4 C 0.023 3.977 5 H 0.057 0.943 6 C -0.194 4.194 7 C 0.021 3.979 8 N -0.327 5.327 9 C -0.348 4.348 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.564 5.564 13 Si 0.742 3.258 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.212 1.212 17 C 0.302 3.698 18 O -0.409 6.409 19 C -0.185 4.185 20 C -0.189 4.189 21 C 0.398 3.602 22 F -0.166 7.166 23 F -0.165 7.165 24 F -0.167 7.167 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.540 -18.792 4.351 21.095 hybrid contribution -0.499 0.784 0.354 0.995 sum -9.039 -18.008 4.705 20.691 Atomic orbital electron populations 1.21828 0.79815 1.03179 1.01887 1.47873 1.06904 1.06611 1.72758 1.21989 0.97612 0.82050 0.99265 1.22428 0.95236 0.87007 0.93059 0.94266 1.23657 0.98640 0.97374 0.99771 1.22158 0.98739 0.88075 0.88951 1.45572 1.51428 1.07821 1.27846 1.18815 1.17890 0.88885 1.09183 0.90407 1.24794 0.98588 0.98366 0.98525 1.69825 1.26190 1.31375 1.28986 0.86214 0.77208 0.83034 0.79358 1.21025 1.21542 1.21237 1.20134 0.87955 0.84906 0.76843 1.90740 1.13562 1.87152 1.49437 1.21656 0.98863 0.92231 1.05766 1.22625 0.98841 0.88176 1.09282 1.20644 0.78193 0.87962 0.73369 1.93186 1.75122 1.96889 1.51373 1.93197 1.66948 1.60151 1.96211 1.93181 1.75309 1.96899 1.51310 0.92388 0.91535 0.90539 0.89222 0.90927 0.89990 0.93373 0.96233 0.90628 0.93603 0.87831 0.87691 0.86263 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.19 59.85 0.61 1.32 16 2 N -0.61 -8.18 2.87 -181.57 -0.52 -8.70 16 3 C 0.11 2.00 5.44 -4.04 -0.02 1.98 16 4 C 0.13 2.66 4.31 -72.41 -0.31 2.35 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.20 8.03 -26.13 -0.21 -3.41 16 7 C 0.15 3.57 7.52 -8.42 -0.06 3.51 16 8 N -0.60 -15.38 3.65 -176.78 -0.64 -16.02 16 9 C -0.22 -6.09 10.55 -15.06 -0.16 -6.25 16 10 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 11 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 12 N -0.92 -27.44 11.43 55.49 0.63 -26.80 16 13 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.51 6.82 7.67 -10.99 -0.08 6.74 16 18 O -0.53 -9.06 15.48 5.55 0.09 -8.97 16 19 C -0.15 -1.26 4.08 -27.89 -0.11 -1.37 16 20 C -0.15 -1.28 4.55 -26.73 -0.12 -1.41 16 21 C 0.45 3.91 3.16 37.16 0.12 4.03 16 22 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 23 F -0.18 -1.78 17.32 2.25 0.04 -1.74 16 24 F -0.19 -1.67 16.80 2.25 0.04 -1.63 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.43 6.66 -51.93 -0.35 0.09 16 27 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 28 H 0.09 1.79 7.00 -51.93 -0.36 1.43 16 29 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 30 H 0.08 1.78 7.94 -51.93 -0.41 1.37 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 2.05 6.92 -51.93 -0.36 1.69 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 0.71 7.07 -51.93 -0.37 0.34 16 36 H 0.10 0.77 7.77 -51.93 -0.40 0.37 16 37 H 0.12 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.12 1.00 8.10 -51.92 -0.42 0.58 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -32.44 330.30 -5.98 -38.43 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.15 Total: -2.10 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.45 Total: 7.23 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.53 Total: -51.53 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.44 -5.98 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231411172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.956 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds