Wall clock time and date at job start Tue Mar 31 2020 07:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36940 * 136.05968 * 321.99137 * 8 4 3 10 10 H 1.07996 * 119.99816 * 355.15134 * 9 8 4 11 11 C 1.38806 * 119.99880 * 175.14672 * 9 8 4 12 12 N 1.31621 * 120.00131 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00058 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47099 * 59.99996 * 13 11 9 15 15 H 1.48502 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46878 * 299.99851 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 C 1.53000 * 109.47349 * 179.97438 * 19 17 2 21 21 C 1.52999 * 109.47287 * 179.97438 * 20 19 17 22 22 F 1.39894 * 109.47075 * 60.00311 * 21 20 19 23 23 F 1.39906 * 109.47121 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46940 * 299.99984 * 21 20 19 25 25 H 1.09006 * 109.47338 * 95.23610 * 1 2 3 26 26 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 27 27 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 28 28 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 29 29 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 30 30 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 31 31 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 32 32 H 1.08996 * 113.47291 * 271.29559 * 7 6 4 33 33 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 34 34 H 0.97004 * 119.99834 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 36 36 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 37 37 H 1.08992 * 109.47307 * 300.00687 * 20 19 17 38 38 H 1.09013 * 109.46521 * 60.00071 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2738 -0.8101 10 1 2.2091 4.3618 0.0204 11 6 3.7145 5.3406 -1.1491 12 7 4.5486 5.2334 -2.1616 13 14 3.6355 6.9284 -0.1682 14 1 3.9749 6.6512 1.2506 15 1 4.6043 7.9048 -0.7279 16 1 2.2637 7.4917 -0.2481 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 6 2.3797 -3.6352 -0.0018 21 6 1.6148 -4.9602 -0.0012 22 9 0.8093 -5.0342 -1.1426 23 9 2.5239 -6.0236 -0.0018 24 9 0.8117 -5.0345 1.1420 25 1 -0.3634 -0.0938 -1.0234 26 1 -0.3633 -0.8394 0.5929 27 1 -0.3633 0.9331 0.4305 28 1 3.1872 1.1169 0.4307 29 1 1.6520 2.0031 0.5928 30 1 4.3946 0.9483 -1.5043 31 1 3.3410 0.4522 -2.9057 32 1 3.0847 2.7790 -3.6504 33 1 4.6765 3.0178 -2.8116 34 1 5.1220 5.9791 -2.3987 35 1 0.7591 -2.5303 0.8897 36 1 0.7585 -2.5298 -0.8902 37 1 3.0057 -3.5770 -0.8921 38 1 3.0071 -3.5778 0.8879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231411172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:03 Heat of formation + Delta-G solvation = -155.408876 kcal Electronic energy + Delta-G solvation = -24083.856761 eV Core-core repulsion = 19933.534542 eV Total energy + Delta-G solvation = -4150.322220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.05249 -48.55998 -48.52353 -41.11670 -39.65332 -36.48461 -34.77256 -34.23020 -30.34146 -29.89449 -28.06351 -26.97408 -25.39232 -24.22517 -23.04088 -21.02668 -20.25654 -19.50740 -19.25394 -18.77588 -18.55314 -17.34469 -17.25859 -16.94869 -16.64719 -15.86481 -15.76225 -15.44527 -15.30733 -14.96922 -14.87565 -14.70167 -14.67270 -14.44928 -14.02697 -13.84114 -13.69587 -13.44407 -13.37436 -12.94985 -12.93680 -12.70185 -12.60999 -12.52332 -12.32764 -12.22277 -11.78024 -11.67478 -11.21503 -10.86832 -10.76922 -9.58025 -8.89702 -7.87600 -5.23041 1.45769 1.49891 1.55648 1.65162 1.72164 2.08326 2.49288 2.87270 3.04995 3.14196 3.32522 3.45057 3.65223 3.87445 3.94595 4.01438 4.25128 4.33128 4.36837 4.46369 4.50507 4.65864 4.71740 4.83752 4.86493 4.87653 5.00118 5.02619 5.09629 5.24003 5.48857 5.53439 5.75437 5.95819 6.46923 6.90577 7.20821 7.62016 8.63182 9.29286 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.003073 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.123326 B = 9110.309494 C = 9377.679271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.129 3.871 4 C 0.138 3.862 5 H 0.057 0.943 6 C -0.132 4.132 7 C 0.140 3.860 8 N -0.630 5.630 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.071 4.071 12 N -0.956 5.956 13 Si 0.980 3.020 14 H -0.275 1.275 15 H -0.298 1.298 16 H -0.274 1.274 17 C 0.510 3.490 18 O -0.577 6.577 19 C -0.134 4.134 20 C -0.148 4.148 21 C 0.460 3.540 22 F -0.185 7.185 23 F -0.191 7.191 24 F -0.185 7.185 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.247 0.753 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -20.451 5.196 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.341 5.341 3 C 0.004 3.996 4 C 0.031 3.969 5 H 0.074 0.926 6 C -0.170 4.170 7 C 0.014 3.986 8 N -0.356 5.356 9 C -0.353 4.353 10 H 0.108 0.892 11 C -0.263 4.263 12 N -0.604 5.604 13 Si 0.808 3.192 14 H -0.201 1.201 15 H -0.224 1.224 16 H -0.200 1.200 17 C 0.299 3.701 18 O -0.457 6.457 19 C -0.173 4.173 20 C -0.187 4.187 21 C 0.406 3.594 22 F -0.167 7.167 23 F -0.172 7.172 24 F -0.167 7.167 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.982 -20.130 5.301 23.536 hybrid contribution 0.202 1.100 0.046 1.120 sum -10.780 -19.030 5.347 22.515 Atomic orbital electron populations 1.22136 0.76848 1.04837 1.03465 1.47907 1.08582 1.05071 1.72584 1.21462 0.96970 0.84242 0.96918 1.22517 0.95246 0.84135 0.94991 0.92595 1.23387 0.98303 0.95713 0.99571 1.22137 0.96715 0.90525 0.89185 1.45903 1.52382 1.09141 1.28162 1.19283 1.17234 0.89557 1.09185 0.89243 1.25687 0.98811 1.01915 0.99923 1.70039 1.27462 1.31925 1.31020 0.85128 0.77278 0.78751 0.78032 1.20085 1.22404 1.20017 1.20922 0.87671 0.86063 0.75444 1.90731 1.15787 1.87844 1.51298 1.21659 0.98568 0.89062 1.08045 1.22575 0.98827 0.88115 1.09134 1.20541 0.77932 0.87644 0.73243 1.93187 1.75138 1.96882 1.51484 1.93186 1.67271 1.60520 1.96240 1.93184 1.75277 1.96886 1.51310 0.91149 0.88038 0.90515 0.92156 0.90829 0.91601 0.90507 0.96275 0.94271 0.94426 0.85199 0.85498 0.86695 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.19 127.77 1.30 2.31 16 2 N -0.61 -14.86 2.87 -846.75 -2.43 -17.29 16 3 C 0.13 4.41 5.44 86.38 0.47 4.88 16 4 C 0.14 5.48 4.31 41.78 0.18 5.66 16 5 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 6 C -0.13 -5.35 8.03 30.99 0.25 -5.11 16 7 C 0.14 7.00 7.52 83.23 0.63 7.63 16 8 N -0.63 -32.50 3.65 -713.22 -2.60 -35.10 16 9 C -0.22 -12.48 10.55 84.03 0.89 -11.59 16 10 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 11 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 12 N -0.96 -59.02 11.43 21.65 0.25 -58.77 16 13 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 C 0.51 12.38 7.67 87.65 0.67 13.05 16 18 O -0.58 -19.25 15.48 -3.04 -0.05 -19.29 16 19 C -0.13 -1.85 4.08 29.85 0.12 -1.73 16 20 C -0.15 -2.19 4.55 30.59 0.14 -2.05 16 21 C 0.46 6.84 3.16 71.98 0.23 7.06 16 22 F -0.19 -2.90 16.80 44.97 0.76 -2.14 16 23 F -0.19 -3.37 17.32 44.97 0.78 -2.59 16 24 F -0.19 -2.79 16.80 44.97 0.76 -2.04 16 25 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.10 0.80 6.66 -2.39 -0.02 0.79 16 27 H 0.08 1.15 7.89 -2.39 -0.02 1.14 16 28 H 0.06 2.43 7.00 -2.39 -0.02 2.42 16 29 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 30 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 2.22 6.92 -2.39 -0.02 2.21 16 34 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 35 H 0.13 1.16 7.07 -2.38 -0.02 1.15 16 36 H 0.13 1.28 7.77 -2.39 -0.02 1.26 16 37 H 0.11 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.12 1.78 8.10 -2.38 -0.02 1.76 16 Total: -1.00 -72.19 330.30 5.89 -66.30 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.07 Total: 6.64 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 5.34 Total: 16.53 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -4.79 Total: -111.17 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.29 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.29 Total: -6.78 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.19 5.89 -66.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231411172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.111 kcal (2) G-P(sol) polarization free energy of solvation -72.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds