Wall clock time and date at job start Tue Mar 31 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53001 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99626 * 275.94692 * 5 4 3 7 7 H 1.07999 * 119.99976 * 35.20653 * 6 5 4 8 8 C 1.38819 * 119.99621 * 215.20827 * 6 5 4 9 9 N 1.31620 * 119.99904 * 21.82585 * 8 6 5 10 10 Si 1.86795 * 119.99806 * 201.82911 * 8 6 5 11 11 H 1.48493 * 109.47406 * 89.99930 * 10 8 6 12 12 H 1.48496 * 109.46992 * 210.00356 * 10 8 6 13 13 H 1.48504 * 109.47231 * 329.99692 * 10 8 6 14 14 C 1.46499 * 120.00266 * 95.94294 * 5 4 3 15 15 C 1.50705 * 109.47049 * 269.99916 * 14 5 4 16 16 C 1.38539 * 119.87037 * 90.00044 * 15 14 5 17 17 F 1.35098 * 119.93588 * 0.02562 * 16 15 14 18 18 C 1.38193 * 120.12773 * 180.02562 * 16 15 14 19 19 C 1.39604 * 119.86726 * 359.97438 * 18 16 15 20 20 C 1.43201 * 120.12110 * 180.02562 * 19 18 16 21 21 N 8.10310 * 71.40039 * 30.48252 * 2 1 3 22 22 C 1.39597 * 119.75071 * 0.26833 * 19 18 16 23 23 C 1.38188 * 119.87163 * 359.49505 * 22 19 18 24 24 F 1.35103 * 119.94092 * 180.25368 * 23 22 19 25 25 H 1.08995 * 109.46894 * 59.99676 * 1 2 3 26 26 H 1.08997 * 109.46747 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46674 * 299.99869 * 1 2 3 28 28 H 1.08999 * 109.46979 * 239.99451 * 2 1 3 29 29 H 1.09003 * 109.47004 * 119.99983 * 2 1 3 30 30 H 1.08997 * 109.47012 * 59.99966 * 3 2 1 31 31 H 1.09003 * 109.47010 * 299.99980 * 3 2 1 32 32 H 1.08997 * 109.47467 * 59.99998 * 4 3 2 33 33 H 1.08996 * 109.47167 * 299.99328 * 4 3 2 34 34 H 0.96997 * 119.99908 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47317 * 150.00383 * 14 5 4 36 36 H 1.08998 * 109.47100 * 29.99877 * 14 5 4 37 37 H 1.08000 * 120.06210 * 179.97438 * 18 16 15 38 38 H 1.07999 * 120.06746 * 179.70472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.1704 3.5107 -1.1793 7 1 3.4508 3.3498 -1.9684 8 6 5.2089 4.4139 -1.3604 9 7 6.3005 4.3165 -0.6314 10 14 5.0570 5.7676 -2.6385 11 1 4.4499 6.9710 -2.0154 12 1 6.4045 6.1076 -3.1619 13 1 4.1960 5.3003 -3.7546 14 6 4.4271 3.4696 1.2621 15 6 3.2212 4.1623 1.8428 16 6 2.3811 3.4774 2.7057 17 9 2.6452 2.1915 3.0246 18 6 1.2736 4.1072 3.2408 19 6 1.0024 5.4363 2.9107 20 6 -0.1435 6.0943 3.4626 21 7 -1.0545 6.6184 3.8958 22 6 1.8496 6.1197 2.0367 23 6 2.9569 5.4812 1.5116 24 9 3.7806 6.1430 0.6696 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9286 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 7.0262 4.9474 -0.7582 35 1 5.2136 4.2018 1.0793 36 1 4.7870 2.7173 1.9638 37 1 0.6192 3.5722 3.9131 38 1 1.6419 7.1465 1.7741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235659990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:04 Heat of formation + Delta-G solvation = -27.240534 kcal Electronic energy + Delta-G solvation = -24208.808604 eV Core-core repulsion = 20494.813406 eV Total energy + Delta-G solvation = -3713.995198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.63608 -48.27594 -38.91773 -36.74720 -36.02132 -34.21104 -31.91339 -31.02256 -30.16911 -28.11504 -26.36604 -24.21970 -22.62593 -22.52695 -20.84015 -20.27579 -19.20024 -17.17645 -16.89381 -16.12887 -15.71700 -15.39933 -15.27521 -14.91832 -14.82893 -14.62843 -13.81152 -13.76326 -13.71672 -13.54270 -13.43918 -13.27055 -13.00685 -12.25384 -12.12268 -12.01293 -11.82927 -11.53505 -11.44353 -11.21589 -10.99009 -10.74775 -10.64588 -10.57457 -10.43183 -10.17962 -10.05799 -9.81288 -8.63282 -8.53931 -8.40139 -6.81435 -5.98141 -3.48643 0.73147 1.24646 2.61024 2.89832 3.32300 3.38740 3.41114 3.69617 3.80502 4.37730 4.47855 4.76018 4.98023 5.02337 5.10713 5.21892 5.34815 5.36536 5.56396 5.62108 5.65479 5.92408 6.03952 6.10644 6.13599 6.18993 6.31113 6.31195 6.33087 6.34630 6.55352 6.61008 6.70530 6.91419 7.03059 7.09513 7.39907 7.43809 7.67925 8.31145 8.97686 9.60953 10.15813 11.01798 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.007836 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.911473 B = 3572.585127 C = 5148.247386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.147 3.853 5 N -0.566 5.566 6 C -0.259 4.259 7 H 0.064 0.936 8 C 0.025 3.975 9 N -0.873 5.873 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.164 3.836 15 C -0.117 4.117 16 C 0.120 3.880 17 F -0.127 7.127 18 C -0.123 4.123 19 C -0.009 4.009 20 C 0.269 3.731 21 N -0.427 5.427 22 C -0.122 4.122 23 C 0.141 3.859 24 F -0.110 7.110 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.259 0.741 35 H 0.119 0.881 36 H 0.048 0.952 37 H 0.140 0.860 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 -2.616 5.495 8.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.179 4.179 4 C 0.021 3.979 5 N -0.282 5.282 6 C -0.388 4.388 7 H 0.082 0.918 8 C -0.177 4.177 9 N -0.513 5.513 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.203 1.203 14 C 0.038 3.962 15 C -0.124 4.124 16 C 0.099 3.901 17 F -0.105 7.105 18 C -0.145 4.145 19 C -0.013 4.013 20 C -0.046 4.046 21 N -0.103 5.103 22 C -0.143 4.143 23 C 0.120 3.880 24 F -0.088 7.088 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.158 0.842 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.477 -1.794 6.061 9.791 hybrid contribution 0.257 0.508 -0.919 1.081 sum -7.220 -1.286 5.141 8.957 Atomic orbital electron populations 1.21756 0.96746 1.00615 1.01491 1.21475 0.95039 0.98147 1.01287 1.22219 0.99276 0.94843 1.01525 1.20979 0.91332 0.86237 0.99354 1.43811 1.74674 1.08044 1.01689 1.19084 1.06683 1.20028 0.92994 0.91791 1.25070 0.93898 1.00746 0.98020 1.69927 1.04039 1.35880 1.41472 0.86447 0.77187 0.82976 0.81191 1.20408 1.21646 1.20258 1.20191 0.91788 0.97775 0.86482 1.21713 1.03059 0.92987 0.94651 1.16868 0.95215 0.79730 0.98238 1.91503 1.93586 1.34249 1.91208 1.20916 0.97599 0.93749 1.02234 1.15039 0.92194 0.92829 1.01270 1.25485 0.92686 0.93221 0.93195 1.81256 1.10865 1.08569 1.09560 1.21047 0.93980 1.01137 0.98180 1.16886 0.89501 0.89834 0.91771 1.91621 1.70056 1.79571 1.67507 0.93078 0.93527 0.93142 0.92513 0.92558 0.92852 0.92523 0.93267 0.94163 0.93058 0.86349 0.93379 0.84211 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 4 C 0.15 2.85 5.72 -4.04 -0.02 2.83 16 5 N -0.57 -12.71 2.44 -174.61 -0.43 -13.13 16 6 C -0.26 -6.45 9.47 -15.05 -0.14 -6.60 16 7 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 8 C 0.02 0.62 4.25 -17.43 -0.07 0.55 16 9 N -0.87 -22.99 11.33 55.49 0.63 -22.36 16 10 Si 0.89 20.51 29.58 -169.99 -5.03 15.48 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.16 3.48 5.09 -5.19 -0.03 3.45 16 15 C -0.12 -2.12 5.46 -104.40 -0.57 -2.69 16 16 C 0.12 1.88 5.74 -39.49 -0.23 1.65 16 17 F -0.13 -2.01 15.65 2.25 0.04 -1.98 16 18 C -0.12 -1.62 9.73 -39.09 -0.38 -2.00 16 19 C -0.01 -0.11 5.73 -106.95 -0.61 -0.73 16 20 C 0.27 3.66 15.33 -22.45 -0.34 3.32 16 21 N -0.43 -6.47 18.54 41.86 0.78 -5.69 16 22 C -0.12 -1.75 9.73 -39.09 -0.38 -2.13 16 23 C 0.14 2.51 7.23 -39.49 -0.29 2.22 16 24 F -0.11 -2.26 15.71 2.25 0.04 -2.23 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.92 5.57 -51.93 -0.29 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 34 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.12 2.86 4.84 -51.93 -0.25 2.60 16 36 H 0.05 0.98 7.34 -51.93 -0.38 0.60 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -25.98 334.28 -6.63 -32.61 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.68 Total: -1.75 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.00 Total: -5.99 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.98 Total: -41.19 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -25.98 -6.63 -32.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235659990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.366 kcal (2) G-P(sol) polarization free energy of solvation -25.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds