Wall clock time and date at job start Tue Mar 31 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53001 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99626 * 275.94692 * 5 4 3 7 7 H 1.07999 * 119.99976 * 35.20653 * 6 5 4 8 8 C 1.38819 * 119.99621 * 215.20827 * 6 5 4 9 9 N 1.31620 * 119.99904 * 21.82585 * 8 6 5 10 10 Si 1.86795 * 119.99806 * 201.82911 * 8 6 5 11 11 H 1.48493 * 109.47406 * 89.99930 * 10 8 6 12 12 H 1.48496 * 109.46992 * 210.00356 * 10 8 6 13 13 H 1.48504 * 109.47231 * 329.99692 * 10 8 6 14 14 C 1.46499 * 120.00266 * 95.94294 * 5 4 3 15 15 C 1.50705 * 109.47049 * 269.99916 * 14 5 4 16 16 C 1.38539 * 119.87037 * 90.00044 * 15 14 5 17 17 F 1.35098 * 119.93588 * 0.02562 * 16 15 14 18 18 C 1.38193 * 120.12773 * 180.02562 * 16 15 14 19 19 C 1.39604 * 119.86726 * 359.97438 * 18 16 15 20 20 C 1.43201 * 120.12110 * 180.02562 * 19 18 16 21 21 N 8.10310 * 71.40039 * 30.48252 * 2 1 3 22 22 C 1.39597 * 119.75071 * 0.26833 * 19 18 16 23 23 C 1.38188 * 119.87163 * 359.49505 * 22 19 18 24 24 F 1.35103 * 119.94092 * 180.25368 * 23 22 19 25 25 H 1.08995 * 109.46894 * 59.99676 * 1 2 3 26 26 H 1.08997 * 109.46747 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46674 * 299.99869 * 1 2 3 28 28 H 1.08999 * 109.46979 * 239.99451 * 2 1 3 29 29 H 1.09003 * 109.47004 * 119.99983 * 2 1 3 30 30 H 1.08997 * 109.47012 * 59.99966 * 3 2 1 31 31 H 1.09003 * 109.47010 * 299.99980 * 3 2 1 32 32 H 1.08997 * 109.47467 * 59.99998 * 4 3 2 33 33 H 1.08996 * 109.47167 * 299.99328 * 4 3 2 34 34 H 0.96997 * 119.99908 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47317 * 150.00383 * 14 5 4 36 36 H 1.08998 * 109.47100 * 29.99877 * 14 5 4 37 37 H 1.08000 * 120.06210 * 179.97438 * 18 16 15 38 38 H 1.07999 * 120.06746 * 179.70472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.1704 3.5107 -1.1793 7 1 3.4508 3.3498 -1.9684 8 6 5.2089 4.4139 -1.3604 9 7 6.3005 4.3165 -0.6314 10 14 5.0570 5.7676 -2.6385 11 1 4.4499 6.9710 -2.0154 12 1 6.4045 6.1076 -3.1619 13 1 4.1960 5.3003 -3.7546 14 6 4.4271 3.4696 1.2621 15 6 3.2212 4.1623 1.8428 16 6 2.3811 3.4774 2.7057 17 9 2.6452 2.1915 3.0246 18 6 1.2736 4.1072 3.2408 19 6 1.0024 5.4363 2.9107 20 6 -0.1435 6.0943 3.4626 21 7 -1.0545 6.6184 3.8958 22 6 1.8496 6.1197 2.0367 23 6 2.9569 5.4812 1.5116 24 9 3.7806 6.1430 0.6696 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9286 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 7.0262 4.9474 -0.7582 35 1 5.2136 4.2018 1.0793 36 1 4.7870 2.7173 1.9638 37 1 0.6192 3.5722 3.9131 38 1 1.6419 7.1465 1.7741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235659990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:03 Heat of formation + Delta-G solvation = -37.790339 kcal Electronic energy + Delta-G solvation = -24209.266078 eV Core-core repulsion = 20494.813406 eV Total energy + Delta-G solvation = -3714.452672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90633 -49.75448 -40.21210 -38.21128 -37.31060 -35.57315 -33.55206 -32.48805 -31.41857 -29.49841 -27.96924 -25.76406 -23.92231 -23.83110 -22.27685 -21.71857 -20.47645 -18.80659 -18.35140 -17.38029 -17.09497 -16.87380 -16.61958 -16.48252 -16.28242 -15.94059 -15.43261 -15.18574 -15.11737 -14.93039 -14.66822 -14.47941 -14.22229 -13.66202 -13.35463 -13.33206 -13.21652 -12.98516 -12.87888 -12.76504 -12.51349 -12.38057 -12.13385 -12.00982 -11.88107 -11.77570 -11.60752 -11.23457 -10.47994 -9.78916 -9.75719 -8.60682 -7.83702 -5.41240 -0.49092 -0.00341 1.45822 1.47921 1.52478 1.54754 1.68970 2.45820 2.52625 2.61794 3.20079 3.28111 3.50245 3.73379 3.76428 3.85597 3.93734 4.20460 4.34472 4.37967 4.46408 4.60004 4.66048 4.88259 4.91726 4.94014 5.03006 5.03868 5.10957 5.11365 5.17454 5.23595 5.44950 5.54763 5.60869 5.66582 5.72105 5.76331 6.30989 6.46384 7.15960 7.83733 8.35255 9.13263 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.007836 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.911473 B = 3572.585127 C = 5148.247386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.124 4.124 4 C 0.146 3.854 5 N -0.583 5.583 6 C -0.263 4.263 7 H 0.052 0.948 8 C -0.008 4.008 9 N -0.905 5.905 10 Si 0.932 3.068 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.275 1.275 14 C 0.170 3.830 15 C -0.130 4.130 16 C 0.122 3.878 17 F -0.127 7.127 18 C -0.099 4.099 19 C 0.015 3.985 20 C 0.290 3.710 21 N -0.442 5.442 22 C -0.107 4.107 23 C 0.119 3.881 24 F -0.133 7.133 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.177 0.823 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 -2.794 7.112 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.164 4.164 4 C 0.021 3.979 5 N -0.302 5.302 6 C -0.392 4.392 7 H 0.070 0.930 8 C -0.207 4.207 9 N -0.548 5.548 10 Si 0.761 3.239 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.200 1.200 14 C 0.043 3.957 15 C -0.136 4.136 16 C 0.102 3.898 17 F -0.105 7.105 18 C -0.120 4.120 19 C 0.011 3.989 20 C -0.025 4.025 21 N -0.117 5.117 22 C -0.128 4.128 23 C 0.098 3.902 24 F -0.111 7.111 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.194 0.806 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.263 -1.967 7.708 12.985 hybrid contribution 0.981 0.567 -1.224 1.668 sum -9.282 -1.400 6.484 11.409 Atomic orbital electron populations 1.21721 0.95109 1.01921 1.01492 1.21444 0.96422 0.95899 1.01803 1.22024 0.97107 0.96778 1.00475 1.21035 0.93047 0.85010 0.98795 1.43884 1.75594 1.09220 1.01492 1.19058 1.06069 1.20141 0.93978 0.93050 1.25449 0.93794 1.02121 0.99317 1.70019 1.04652 1.36719 1.43405 0.85827 0.76656 0.81474 0.79915 1.20489 1.22196 1.19977 1.19868 0.92493 0.97081 0.86212 1.21456 1.01965 0.93732 0.96411 1.16856 0.95421 0.79656 0.97899 1.91509 1.93650 1.34244 1.91121 1.21204 0.96442 0.93380 1.00980 1.14985 0.91355 0.92678 0.99904 1.25161 0.92121 0.92642 0.92608 1.81316 1.11369 1.09039 1.09981 1.21196 0.92460 1.02059 0.97092 1.17161 0.90562 0.90055 0.92392 1.91563 1.71025 1.79970 1.68540 0.93443 0.91601 0.92778 0.92430 0.91670 0.92815 0.94484 0.94872 0.93585 0.93734 0.89359 0.93515 0.80551 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.50 16 2 C -0.12 -3.09 5.93 30.60 0.18 -2.91 16 3 C -0.12 -4.14 5.50 30.59 0.17 -3.97 16 4 C 0.15 5.76 5.72 86.38 0.49 6.26 16 5 N -0.58 -26.90 2.44 -706.34 -1.72 -28.62 16 6 C -0.26 -13.53 9.47 84.03 0.80 -12.74 16 7 H 0.05 2.72 7.92 -2.91 -0.02 2.70 16 8 C -0.01 -0.42 4.25 84.86 0.36 -0.06 16 9 N -0.90 -49.79 11.33 21.65 0.25 -49.55 16 10 Si 0.93 43.24 29.58 68.60 2.03 45.27 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 14 C 0.17 7.38 5.09 85.63 0.44 7.82 16 15 C -0.13 -4.62 5.46 -19.72 -0.11 -4.73 16 16 C 0.12 3.51 5.74 22.33 0.13 3.64 16 17 F -0.13 -3.71 15.65 44.97 0.70 -3.01 16 18 C -0.10 -2.17 9.73 22.59 0.22 -1.95 16 19 C 0.02 0.34 5.73 -21.38 -0.12 0.22 16 20 C 0.29 6.62 15.33 88.32 1.35 7.97 16 21 N -0.44 -11.68 18.54 19.01 0.35 -11.33 16 22 C -0.11 -2.77 9.73 22.59 0.22 -2.55 16 23 C 0.12 4.12 7.23 22.33 0.16 4.28 16 24 F -0.13 -5.57 15.71 44.97 0.71 -4.86 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.76 5.57 -2.39 -0.01 1.75 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 33 H 0.05 1.72 7.83 -2.39 -0.02 1.70 16 34 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 35 H 0.09 4.46 4.84 -2.39 -0.01 4.45 16 36 H 0.05 1.96 7.34 -2.39 -0.02 1.94 16 37 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -57.87 334.28 8.40 -49.47 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.08 Total: 3.86 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.00 Total: -1.23 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -1.12 Total: -89.50 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.41 Total: -7.87 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -57.87 8.40 -49.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235659990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.678 kcal (2) G-P(sol) polarization free energy of solvation -57.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds