Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53001 * 109.47243 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99962 * 90.00721 * 5 4 3 7 7 H 1.07994 * 120.00218 * 34.86280 * 6 5 4 8 8 C 1.38812 * 119.99804 * 215.14464 * 6 5 4 9 9 N 1.31613 * 120.00187 * 213.74218 * 8 6 5 10 10 Si 1.86808 * 120.00122 * 33.74349 * 8 6 5 11 11 H 1.48496 * 109.47124 * 92.76209 * 10 8 6 12 12 H 1.48495 * 109.47324 * 212.76330 * 10 8 6 13 13 H 1.48501 * 109.46669 * 332.76203 * 10 8 6 14 14 C 1.46504 * 119.99904 * 270.00007 * 5 4 3 15 15 C 1.50695 * 109.47745 * 274.70686 * 14 5 4 16 16 C 1.37816 * 119.90424 * 105.82056 * 15 14 5 17 17 C 1.39709 * 119.89409 * 179.79682 * 16 15 14 18 18 C 1.43202 * 120.13805 * 180.23447 * 17 16 15 19 19 N 7.93019 * 138.29636 * 274.44259 * 2 1 3 20 20 C 1.39958 * 119.71491 * 0.50449 * 17 16 15 21 21 F 1.35097 * 120.09853 * 179.70163 * 20 17 16 22 22 C 1.38142 * 119.80358 * 359.72856 * 20 17 16 23 23 C 1.38539 * 120.09966 * 0.02562 * 22 20 17 24 24 F 1.35107 * 119.85278 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47100 * 60.00151 * 1 2 3 26 26 H 1.09005 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47239 * 299.99929 * 1 2 3 28 28 H 1.09007 * 109.47184 * 240.00104 * 2 1 3 29 29 H 1.09005 * 109.47414 * 120.00391 * 2 1 3 30 30 H 1.08999 * 109.47190 * 60.00316 * 3 2 1 31 31 H 1.09005 * 109.47349 * 299.99901 * 3 2 1 32 32 H 1.09007 * 109.46860 * 60.00214 * 4 3 2 33 33 H 1.08991 * 109.47593 * 300.00689 * 4 3 2 34 34 H 0.96999 * 120.00312 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47358 * 34.71192 * 14 5 4 36 36 H 1.09000 * 109.46927 * 154.70611 * 14 5 4 37 37 H 1.07996 * 120.04874 * 0.02562 * 16 15 14 38 38 H 1.08003 * 119.94905 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2861 3.4688 1.1874 7 1 4.6584 2.9183 2.0387 8 6 4.0331 4.8292 1.2974 9 7 4.7883 5.5786 2.0722 10 14 2.6205 5.5965 0.3456 11 1 1.4027 5.6135 1.1952 12 1 2.9777 6.9866 -0.0354 13 1 2.3584 4.7992 -0.8795 14 6 4.3029 3.5147 -1.2672 15 6 5.6882 3.1846 -1.7602 16 6 5.8522 2.3185 -2.8196 17 6 7.1364 2.0159 -3.2791 18 6 7.3127 1.1205 -4.3828 19 7 7.4506 0.4087 -5.2599 20 6 8.2500 2.5871 -2.6527 21 9 9.4955 2.2951 -3.0869 22 6 8.0717 3.4499 -1.5887 23 6 6.7945 3.7485 -1.1427 24 9 6.6260 4.5925 -0.1013 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 0.9285 -0.8892 33 1 3.9330 0.9287 0.8907 34 1 4.6117 6.5293 2.1487 35 1 3.5683 3.1915 -2.0046 36 1 4.2177 4.5909 -1.1170 37 1 4.9893 1.8773 -3.2960 38 1 8.9294 3.8917 -1.1032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237529722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -20.565717 kcal Electronic energy + Delta-G solvation = -23569.331538 eV Core-core repulsion = 19855.625781 eV Total energy + Delta-G solvation = -3713.705757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.04613 -48.20132 -39.06506 -36.78488 -36.14274 -34.24230 -31.97014 -31.11470 -30.87069 -28.29089 -25.77481 -24.17088 -23.71321 -22.38335 -21.15055 -20.17501 -18.66459 -17.72978 -17.15032 -16.83821 -15.91574 -15.44130 -15.04416 -14.81907 -14.65366 -14.53953 -14.17978 -14.01773 -13.73655 -13.65041 -13.37870 -13.18203 -13.08908 -12.61652 -12.30807 -12.15539 -12.04962 -11.90354 -11.53300 -11.38963 -10.97863 -10.86951 -10.75784 -10.61552 -10.47225 -10.21775 -9.95610 -9.62924 -8.92736 -8.53570 -8.33890 -7.04094 -6.15563 -3.41186 0.66620 1.12328 2.60013 2.86215 3.28237 3.41255 3.46157 3.68228 3.78797 3.96504 4.45381 4.58348 4.71758 4.86430 5.06892 5.15456 5.25255 5.29309 5.49103 5.49504 5.66598 5.80208 5.83347 5.90970 6.06599 6.07104 6.09029 6.17600 6.20814 6.24425 6.39151 6.43910 6.51866 6.57022 6.81715 6.91082 6.98459 7.44290 7.88686 8.27696 8.85988 9.61375 10.00192 10.98756 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.006310 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.595800 B = 4436.510438 C = 6096.335043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.149 3.851 5 N -0.590 5.590 6 C -0.281 4.281 7 H 0.078 0.922 8 C 0.058 3.942 9 N -0.862 5.862 10 Si 0.837 3.163 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.261 1.261 14 C 0.181 3.819 15 C -0.140 4.140 16 C -0.017 4.017 17 C -0.092 4.092 18 C 0.265 3.735 19 N -0.423 5.423 20 C 0.161 3.839 21 F -0.130 7.130 22 C -0.205 4.205 23 C 0.195 3.805 24 F -0.079 7.079 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -5.062 -6.878 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.023 3.977 5 N -0.309 5.309 6 C -0.408 4.408 7 H 0.095 0.905 8 C -0.146 4.146 9 N -0.499 5.499 10 Si 0.663 3.337 11 H -0.217 1.217 12 H -0.220 1.220 13 H -0.185 1.185 14 C 0.055 3.945 15 C -0.145 4.145 16 C -0.039 4.039 17 C -0.097 4.097 18 C -0.050 4.050 19 N -0.099 5.099 20 C 0.138 3.862 21 F -0.108 7.108 22 C -0.225 4.225 23 C 0.173 3.827 24 F -0.057 7.057 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.484 -5.965 -8.063 10.041 hybrid contribution -0.648 0.969 0.079 1.168 sum -0.164 -4.996 -7.984 9.420 Atomic orbital electron populations 1.21769 0.96702 1.00685 1.01630 1.21498 0.95160 0.98090 1.01293 1.22208 0.99039 0.94832 1.01972 1.20964 0.91251 0.86165 0.99286 1.44137 1.73825 1.11467 1.01515 1.18593 1.40254 0.91930 0.90070 0.90475 1.25333 0.96983 0.96189 0.96105 1.70056 1.34350 1.05591 1.39913 0.87589 0.86447 0.78414 0.81205 1.21664 1.22038 1.18537 1.20326 0.87619 0.98086 0.88490 1.21319 0.99559 0.98276 0.95327 1.20793 0.94467 0.94536 0.94070 1.15878 0.93950 1.02928 0.96915 1.25427 0.93816 0.92979 0.92735 1.81291 1.07100 1.10485 1.11012 1.17070 0.78349 0.96556 0.94176 1.91524 1.38808 1.91801 1.88660 1.20972 0.98350 1.03460 0.99721 1.17551 0.91893 0.88333 0.84875 1.91858 1.95837 1.65748 1.52221 0.93168 0.93494 0.92873 0.92726 0.92325 0.91654 0.93133 0.94325 0.92916 0.92656 0.92612 0.90941 0.83843 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.58 5.93 -26.74 -0.16 -1.74 16 3 C -0.14 -2.24 5.54 -26.73 -0.15 -2.39 16 4 C 0.15 2.56 5.69 -4.04 -0.02 2.54 16 5 N -0.59 -12.01 2.08 -174.62 -0.36 -12.38 16 6 C -0.28 -6.88 8.70 -15.06 -0.13 -7.01 16 7 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.06 1.48 4.22 -17.43 -0.07 1.40 16 9 N -0.86 -23.57 13.93 55.49 0.77 -22.80 16 10 Si 0.84 19.42 26.30 -169.99 -4.47 14.95 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -5.59 5.73 56.52 0.32 -5.27 16 14 C 0.18 3.33 3.71 -5.19 -0.02 3.31 16 15 C -0.14 -2.25 5.46 -104.62 -0.57 -2.82 16 16 C -0.02 -0.23 9.37 -39.19 -0.37 -0.59 16 17 C -0.09 -1.23 5.74 -106.78 -0.61 -1.84 16 18 C 0.27 3.76 14.98 -22.40 -0.34 3.42 16 19 N -0.42 -6.65 18.55 41.92 0.78 -5.87 16 20 C 0.16 2.19 7.28 -38.97 -0.28 1.91 16 21 F -0.13 -1.78 16.81 2.25 0.04 -1.74 16 22 C -0.21 -2.90 9.99 -39.51 -0.39 -3.30 16 23 C 0.20 3.31 7.25 -39.31 -0.28 3.03 16 24 F -0.08 -1.67 14.74 2.25 0.03 -1.64 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.07 1.49 4.28 -51.93 -0.22 1.27 16 37 H 0.14 1.56 7.99 -52.49 -0.42 1.14 16 38 H 0.15 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -26.78 333.82 -6.12 -32.91 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.91 Total: -2.96 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.04 Total: -5.49 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.19 Total: -41.05 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.38 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.47 Total: 14.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.78 -6.12 -32.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237529722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.341 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds