Wall clock time and date at job start Tue Mar 31 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53001 * 109.47243 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99962 * 90.00721 * 5 4 3 7 7 H 1.07994 * 120.00218 * 34.86280 * 6 5 4 8 8 C 1.38812 * 119.99804 * 215.14464 * 6 5 4 9 9 N 1.31613 * 120.00187 * 213.74218 * 8 6 5 10 10 Si 1.86808 * 120.00122 * 33.74349 * 8 6 5 11 11 H 1.48496 * 109.47124 * 92.76209 * 10 8 6 12 12 H 1.48495 * 109.47324 * 212.76330 * 10 8 6 13 13 H 1.48501 * 109.46669 * 332.76203 * 10 8 6 14 14 C 1.46504 * 119.99904 * 270.00007 * 5 4 3 15 15 C 1.50695 * 109.47745 * 274.70686 * 14 5 4 16 16 C 1.37816 * 119.90424 * 105.82056 * 15 14 5 17 17 C 1.39709 * 119.89409 * 179.79682 * 16 15 14 18 18 C 1.43202 * 120.13805 * 180.23447 * 17 16 15 19 19 N 7.93019 * 138.29636 * 274.44259 * 2 1 3 20 20 C 1.39958 * 119.71491 * 0.50449 * 17 16 15 21 21 F 1.35097 * 120.09853 * 179.70163 * 20 17 16 22 22 C 1.38142 * 119.80358 * 359.72856 * 20 17 16 23 23 C 1.38539 * 120.09966 * 0.02562 * 22 20 17 24 24 F 1.35107 * 119.85278 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47100 * 60.00151 * 1 2 3 26 26 H 1.09005 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47239 * 299.99929 * 1 2 3 28 28 H 1.09007 * 109.47184 * 240.00104 * 2 1 3 29 29 H 1.09005 * 109.47414 * 120.00391 * 2 1 3 30 30 H 1.08999 * 109.47190 * 60.00316 * 3 2 1 31 31 H 1.09005 * 109.47349 * 299.99901 * 3 2 1 32 32 H 1.09007 * 109.46860 * 60.00214 * 4 3 2 33 33 H 1.08991 * 109.47593 * 300.00689 * 4 3 2 34 34 H 0.96999 * 120.00312 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47358 * 34.71192 * 14 5 4 36 36 H 1.09000 * 109.46927 * 154.70611 * 14 5 4 37 37 H 1.07996 * 120.04874 * 0.02562 * 16 15 14 38 38 H 1.08003 * 119.94905 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2861 3.4688 1.1874 7 1 4.6584 2.9183 2.0387 8 6 4.0331 4.8292 1.2974 9 7 4.7883 5.5786 2.0722 10 14 2.6205 5.5965 0.3456 11 1 1.4027 5.6135 1.1952 12 1 2.9777 6.9866 -0.0354 13 1 2.3584 4.7992 -0.8795 14 6 4.3029 3.5147 -1.2672 15 6 5.6882 3.1846 -1.7602 16 6 5.8522 2.3185 -2.8196 17 6 7.1364 2.0159 -3.2791 18 6 7.3127 1.1205 -4.3828 19 7 7.4506 0.4087 -5.2599 20 6 8.2500 2.5871 -2.6527 21 9 9.4955 2.2951 -3.0869 22 6 8.0717 3.4499 -1.5887 23 6 6.7945 3.7485 -1.1427 24 9 6.6260 4.5925 -0.1013 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 0.9285 -0.8892 33 1 3.9330 0.9287 0.8907 34 1 4.6117 6.5293 2.1487 35 1 3.5683 3.1915 -2.0046 36 1 4.2177 4.5909 -1.1170 37 1 4.9893 1.8773 -3.2960 38 1 8.9294 3.8917 -1.1032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237529722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:06 Heat of formation + Delta-G solvation = -32.772310 kcal Electronic energy + Delta-G solvation = -23569.860856 eV Core-core repulsion = 19855.625781 eV Total energy + Delta-G solvation = -3714.235074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.18337 -49.64782 -40.29074 -38.17753 -37.37880 -35.49647 -33.71744 -32.37800 -32.11550 -29.59896 -27.28909 -25.60266 -24.93457 -23.59247 -22.42735 -21.51911 -19.94770 -18.98102 -18.60277 -18.32228 -17.18400 -16.92973 -16.39179 -16.16954 -16.03466 -15.84474 -15.48446 -15.28999 -15.02677 -14.83492 -14.68787 -14.52600 -14.36060 -14.16443 -13.64636 -13.49592 -13.27191 -13.20377 -12.85738 -12.68134 -12.58702 -12.21900 -12.11787 -11.96529 -11.81104 -11.66047 -11.35113 -11.19800 -10.44345 -10.08346 -9.61011 -8.73440 -8.10754 -5.32479 -0.52156 -0.02036 1.40345 1.46127 1.53500 1.56458 1.68868 2.50903 2.54844 2.61623 2.80382 3.15483 3.38960 3.54555 3.61890 3.81807 4.10760 4.23578 4.32783 4.44510 4.47550 4.58504 4.63233 4.78577 4.86146 4.89534 4.94791 4.96087 5.10505 5.12736 5.14165 5.25103 5.27647 5.45890 5.57508 5.66296 5.69448 6.03713 6.31224 6.32555 7.10441 7.78027 8.18688 9.07888 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.006310 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.595800 B = 4436.510438 C = 6096.335043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.134 4.134 4 C 0.147 3.853 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.036 0.964 8 C 0.014 3.986 9 N -0.911 5.911 10 Si 0.886 3.114 11 H -0.305 1.305 12 H -0.305 1.305 13 H -0.229 1.229 14 C 0.177 3.823 15 C -0.147 4.147 16 C 0.008 3.992 17 C -0.080 4.080 18 C 0.282 3.718 19 N -0.444 5.444 20 C 0.172 3.828 21 F -0.127 7.127 22 C -0.196 4.196 23 C 0.168 3.832 24 F -0.113 7.113 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.258 0.742 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.179 0.821 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -7.024 -9.782 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.174 4.174 4 C 0.023 3.977 5 N -0.322 5.322 6 C -0.387 4.387 7 H 0.054 0.946 8 C -0.185 4.185 9 N -0.552 5.552 10 Si 0.714 3.286 11 H -0.234 1.234 12 H -0.232 1.232 13 H -0.151 1.151 14 C 0.052 3.948 15 C -0.151 4.151 16 C -0.013 4.013 17 C -0.085 4.085 18 C -0.032 4.032 19 N -0.120 5.120 20 C 0.150 3.850 21 F -0.105 7.105 22 C -0.215 4.215 23 C 0.147 3.853 24 F -0.090 7.090 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.196 0.804 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.075 -7.968 -11.025 13.603 hybrid contribution -0.334 1.458 0.907 1.749 sum -0.410 -6.510 -10.118 12.038 Atomic orbital electron populations 1.21761 0.95794 1.01804 1.01374 1.21450 0.95934 0.95921 1.02177 1.22096 0.97908 0.96730 1.00617 1.21075 0.92114 0.84465 1.00090 1.44209 1.74805 1.12334 1.00890 1.18306 1.38069 0.91501 0.90797 0.94648 1.25692 0.98615 0.96742 0.97470 1.70156 1.36379 1.05475 1.43172 0.86783 0.83162 0.77553 0.81116 1.23405 1.23206 1.15149 1.20312 0.89789 0.96603 0.88112 1.21066 0.97943 0.99408 0.96707 1.20978 0.95450 0.92515 0.92331 1.15822 0.93906 1.02360 0.96385 1.25306 0.93148 0.92461 0.92309 1.81335 1.07768 1.11180 1.11706 1.17048 0.78540 0.95829 0.93604 1.91544 1.38790 1.91668 1.88518 1.20983 0.97803 1.03133 0.99599 1.17924 0.93481 0.89067 0.84862 1.91787 1.96103 1.67100 1.54043 0.92743 0.91704 0.93879 0.90801 0.92458 0.94728 0.92730 0.91195 0.94356 0.93306 0.89345 0.93457 0.80412 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.42 16 2 C -0.12 -2.69 5.93 30.59 0.18 -2.51 16 3 C -0.13 -4.00 5.54 30.59 0.17 -3.83 16 4 C 0.15 4.77 5.69 86.38 0.49 5.26 16 5 N -0.60 -23.95 2.08 -706.36 -1.47 -25.42 16 6 C -0.26 -12.99 8.70 84.03 0.73 -12.26 16 7 H 0.04 2.06 8.06 -2.91 -0.02 2.03 16 8 C 0.01 0.77 4.22 84.86 0.36 1.12 16 9 N -0.91 -52.41 13.93 21.65 0.30 -52.11 16 10 Si 0.89 40.88 26.30 68.60 1.80 42.69 16 11 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.23 -9.18 5.73 99.48 0.57 -8.61 16 14 C 0.18 6.11 3.71 85.63 0.32 6.43 16 15 C -0.15 -4.36 5.46 -19.86 -0.11 -4.47 16 16 C 0.01 0.18 9.37 22.53 0.21 0.39 16 17 C -0.08 -1.82 5.74 -21.26 -0.12 -1.94 16 18 C 0.28 6.91 14.98 88.31 1.32 8.23 16 19 N -0.44 -12.46 18.55 19.03 0.35 -12.11 16 20 C 0.17 4.17 7.28 22.66 0.16 4.34 16 21 F -0.13 -3.11 16.81 44.97 0.76 -2.35 16 22 C -0.20 -5.20 9.99 22.32 0.22 -4.98 16 23 C 0.17 5.56 7.25 22.45 0.16 5.72 16 24 F -0.11 -4.89 14.74 44.97 0.66 -4.22 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.84 8.07 -2.38 -0.02 1.82 16 33 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 36 H 0.05 1.89 4.28 -2.39 -0.01 1.88 16 37 H 0.18 2.75 7.99 -2.91 -0.02 2.72 16 38 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -60.67 333.82 8.17 -52.51 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 0.94 Total: 1.92 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.82 Total: -0.90 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -0.81 Total: -89.63 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 1.42 Total: -6.58 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.80 Total: 42.69 kcal Total: -60.67 8.17 -52.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237529722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.734 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds