Wall clock time and date at job start Tue Mar 31 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46654 * 2 1 4 4 N 1.46902 * 109.47015 * 179.36496 * 3 2 1 5 5 C 1.46900 * 111.00400 * 287.96263 * 4 3 2 6 6 C 1.50702 * 109.46749 * 160.35917 * 5 4 3 7 7 H 1.07997 * 120.00562 * 4.66554 * 6 5 4 8 8 C 1.37879 * 119.99517 * 184.67455 * 6 5 4 9 9 N 1.31516 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 59.99305 * 10 8 6 12 12 H 1.48503 * 109.47371 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46935 * 299.99243 * 10 8 6 14 14 C 1.46903 * 110.99858 * 164.00681 * 4 3 2 15 15 C 1.50701 * 109.47302 * 293.95638 * 14 4 3 16 16 C 1.37814 * 119.90346 * 104.99690 * 15 14 4 17 17 C 1.39705 * 119.89875 * 180.02562 * 16 15 14 18 18 C 1.43206 * 120.14481 * 180.02562 * 17 16 15 19 19 N 7.18974 * 81.85915 * 325.70966 * 2 1 3 20 20 C 1.39958 * 119.71106 * 0.02562 * 17 16 15 21 21 F 1.35100 * 120.09808 * 179.97438 * 20 17 16 22 22 C 1.38133 * 119.80652 * 359.97438 * 20 17 16 23 23 C 1.38546 * 120.10187 * 0.28066 * 22 20 17 24 24 F 1.35101 * 119.85944 * 179.69572 * 23 22 20 25 25 H 1.09002 * 109.47343 * 60.00039 * 1 2 3 26 26 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47343 * 299.99476 * 1 2 3 28 28 H 1.09000 * 109.47097 * 240.01016 * 2 1 3 29 29 H 1.08999 * 109.47714 * 120.00327 * 2 1 3 30 30 H 1.09003 * 109.46958 * 59.37144 * 3 2 1 31 31 H 1.08995 * 109.47810 * 299.37325 * 3 2 1 32 32 H 1.09001 * 109.46959 * 280.35347 * 5 4 3 33 33 H 1.08998 * 109.47025 * 40.35599 * 5 4 3 34 34 H 0.97000 * 120.00178 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47333 * 173.95779 * 14 4 3 36 36 H 1.08999 * 109.47094 * 53.95433 * 14 4 3 37 37 H 1.08004 * 120.05199 * 0.02752 * 16 15 14 38 38 H 1.08002 * 119.95208 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4427 0.0154 5 6 4.0217 1.0246 1.3269 6 6 5.4526 0.5732 1.1860 7 1 5.9568 0.6651 0.2353 8 6 6.1180 0.0426 2.2708 9 7 5.5042 -0.0691 3.4285 10 14 7.8914 -0.5177 2.0960 11 1 8.7357 0.6326 1.6846 12 1 8.3744 -1.0453 3.3974 13 1 7.9741 -1.5854 1.0673 14 6 4.0391 2.7597 -0.3619 15 6 3.6955 3.0462 -1.8010 16 6 2.6940 3.9436 -2.1027 17 6 2.3753 4.2088 -3.4368 18 6 1.3359 5.1407 -3.7563 19 7 0.5119 5.8803 -4.0098 20 6 3.0761 3.5596 -4.4597 21 9 2.7739 3.8097 -5.7524 22 6 4.0777 2.6624 -4.1435 23 6 4.3837 2.4014 -2.8177 24 9 5.3601 1.5183 -2.5140 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6673 1.9596 0.8843 31 1 1.6858 1.9532 -0.8955 32 1 3.9722 1.8638 2.0207 33 1 3.4169 0.2018 1.7081 34 1 5.9724 -0.4420 4.1918 35 1 5.1221 2.7641 -0.2391 36 1 3.5980 3.5254 0.2763 37 1 2.1565 4.4412 -1.3090 38 1 4.6202 2.1604 -4.9310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237535373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:48 Heat of formation + Delta-G solvation = -39.806282 kcal Electronic energy + Delta-G solvation = -23258.165746 eV Core-core repulsion = 19543.625656 eV Total energy + Delta-G solvation = -3714.540090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.34598 -48.84371 -39.54026 -37.24114 -36.43869 -33.23598 -32.70556 -31.44150 -30.94969 -27.26847 -26.36524 -24.23116 -23.87194 -22.52939 -21.55773 -19.96530 -18.73944 -18.18524 -17.50171 -16.51044 -16.23256 -15.68792 -15.37565 -14.94753 -14.86261 -14.57956 -14.42918 -14.24021 -13.98808 -13.85487 -13.67421 -13.53081 -13.00499 -12.63745 -12.44064 -12.20423 -11.93558 -11.80353 -11.61829 -11.47740 -11.18577 -11.03097 -10.72942 -10.65527 -10.54677 -10.17469 -9.72772 -9.36836 -9.22446 -8.74050 -8.43366 -7.39946 -6.04534 -4.05643 0.30854 0.75322 2.38984 2.56487 3.32820 3.37347 3.37733 3.40590 3.48137 3.61573 4.14563 4.34228 4.40910 4.59726 4.79858 4.92272 5.30664 5.31825 5.41045 5.44846 5.51452 5.57006 5.68179 5.70584 5.80204 5.90455 6.00816 6.13366 6.24560 6.25599 6.32330 6.49254 6.62949 6.78402 7.13351 7.21877 7.25173 7.78066 8.02707 8.09736 8.46761 9.02132 9.58820 11.05927 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.004605 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.879993 B = 6078.957921 C = 7028.735901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.052 3.948 4 N -0.529 5.529 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.065 0.935 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.097 3.903 15 C -0.112 4.112 16 C -0.014 4.014 17 C -0.082 4.082 18 C 0.260 3.740 19 N -0.410 5.410 20 C 0.169 3.831 21 F -0.124 7.124 22 C -0.199 4.199 23 C 0.194 3.806 24 F -0.102 7.102 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.057 0.943 32 H -0.010 1.010 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.150 0.850 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 5.457 -11.800 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.254 5.254 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.030 4.030 15 C -0.114 4.114 16 C -0.035 4.035 17 C -0.086 4.086 18 C -0.056 4.056 19 N -0.085 5.085 20 C 0.147 3.853 21 F -0.103 7.103 22 C -0.219 4.219 23 C 0.172 3.828 24 F -0.080 7.080 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.008 0.992 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.167 0.833 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.128 6.166 -12.365 15.115 hybrid contribution 1.116 -0.225 0.497 1.242 sum -5.012 5.942 -11.868 14.187 Atomic orbital electron populations 1.21744 0.96696 1.01125 1.01056 1.21485 0.93951 0.97020 1.03189 1.22122 0.89569 0.96800 0.99130 1.62204 1.05242 1.23411 1.34527 1.19809 0.95981 0.95181 0.82219 1.21136 0.96431 1.40475 0.96361 0.91689 1.24964 0.98304 0.95969 0.95245 1.69939 1.37133 1.45903 1.00970 0.86597 0.84787 0.79137 0.77112 1.20283 1.21486 1.20153 1.20960 1.02694 0.91870 0.87521 1.20220 0.96422 0.97107 0.97622 1.20898 0.94234 0.94680 0.93677 1.15876 0.98009 1.01055 0.93683 1.25235 0.93011 0.93170 0.94147 1.81237 1.10376 1.10181 1.06745 1.17093 0.94794 0.95724 0.77672 1.91558 1.92013 1.92688 1.33992 1.20954 1.01239 1.02735 0.96934 1.17357 0.86486 0.87498 0.91418 1.91661 1.58173 1.64508 1.93626 0.93365 0.93027 0.93163 0.91685 0.91135 0.95717 0.92451 0.99181 0.94219 0.92896 0.88052 0.94084 0.83260 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.87 6.01 -26.73 -0.16 -2.03 16 3 C 0.05 0.83 4.83 -3.82 -0.02 0.82 16 4 N -0.53 -9.96 4.37 -237.51 -1.04 -10.99 16 5 C 0.19 4.56 4.59 -4.97 -0.02 4.54 16 6 C -0.51 -13.25 8.61 -34.44 -0.30 -13.54 16 7 H 0.06 1.69 7.66 -52.49 -0.40 1.29 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 10 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 C 0.10 1.55 4.59 -4.97 -0.02 1.53 16 15 C -0.11 -1.42 4.48 -104.61 -0.47 -1.89 16 16 C -0.01 -0.14 8.36 -39.19 -0.33 -0.47 16 17 C -0.08 -0.86 5.74 -106.78 -0.61 -1.48 16 18 C 0.26 3.11 14.98 -22.47 -0.34 2.78 16 19 N -0.41 -5.69 18.54 41.83 0.78 -4.92 16 20 C 0.17 1.77 7.28 -38.98 -0.28 1.49 16 21 F -0.12 -1.36 16.81 2.25 0.04 -1.32 16 22 C -0.20 -2.04 9.99 -39.51 -0.39 -2.44 16 23 C 0.19 2.46 7.25 -39.30 -0.28 2.18 16 24 F -0.10 -1.58 16.74 2.25 0.04 -1.54 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.28 6.52 -51.93 -0.34 0.94 16 30 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.06 0.79 6.12 -51.93 -0.32 0.48 16 32 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 33 H 0.04 1.02 6.24 -51.93 -0.32 0.70 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.10 1.81 7.26 -51.93 -0.38 1.43 16 36 H 0.04 0.61 7.92 -51.93 -0.41 0.19 16 37 H 0.15 1.31 7.99 -52.48 -0.42 0.89 16 38 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -28.54 337.38 -7.02 -35.56 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.67 Total: -4.26 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.96 Total: -8.60 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.47 Total: -40.81 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.54 -7.02 -35.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237535373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.244 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds