Wall clock time and date at job start Tue Mar 31 2020 06:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46654 * 2 1 4 4 N 1.46902 * 109.47015 * 179.36496 * 3 2 1 5 5 C 1.46900 * 111.00400 * 287.96263 * 4 3 2 6 6 C 1.50702 * 109.46749 * 160.35917 * 5 4 3 7 7 H 1.07997 * 120.00562 * 4.66554 * 6 5 4 8 8 C 1.37879 * 119.99517 * 184.67455 * 6 5 4 9 9 N 1.31516 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 59.99305 * 10 8 6 12 12 H 1.48503 * 109.47371 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46935 * 299.99243 * 10 8 6 14 14 C 1.46903 * 110.99858 * 164.00681 * 4 3 2 15 15 C 1.50701 * 109.47302 * 293.95638 * 14 4 3 16 16 C 1.37814 * 119.90346 * 104.99690 * 15 14 4 17 17 C 1.39705 * 119.89875 * 180.02562 * 16 15 14 18 18 C 1.43206 * 120.14481 * 180.02562 * 17 16 15 19 19 N 7.18974 * 81.85915 * 325.70966 * 2 1 3 20 20 C 1.39958 * 119.71106 * 0.02562 * 17 16 15 21 21 F 1.35100 * 120.09808 * 179.97438 * 20 17 16 22 22 C 1.38133 * 119.80652 * 359.97438 * 20 17 16 23 23 C 1.38546 * 120.10187 * 0.28066 * 22 20 17 24 24 F 1.35101 * 119.85944 * 179.69572 * 23 22 20 25 25 H 1.09002 * 109.47343 * 60.00039 * 1 2 3 26 26 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47343 * 299.99476 * 1 2 3 28 28 H 1.09000 * 109.47097 * 240.01016 * 2 1 3 29 29 H 1.08999 * 109.47714 * 120.00327 * 2 1 3 30 30 H 1.09003 * 109.46958 * 59.37144 * 3 2 1 31 31 H 1.08995 * 109.47810 * 299.37325 * 3 2 1 32 32 H 1.09001 * 109.46959 * 280.35347 * 5 4 3 33 33 H 1.08998 * 109.47025 * 40.35599 * 5 4 3 34 34 H 0.97000 * 120.00178 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47333 * 173.95779 * 14 4 3 36 36 H 1.08999 * 109.47094 * 53.95433 * 14 4 3 37 37 H 1.08004 * 120.05199 * 0.02752 * 16 15 14 38 38 H 1.08002 * 119.95208 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4427 0.0154 5 6 4.0217 1.0246 1.3269 6 6 5.4526 0.5732 1.1860 7 1 5.9568 0.6651 0.2353 8 6 6.1180 0.0426 2.2708 9 7 5.5042 -0.0691 3.4285 10 14 7.8914 -0.5177 2.0960 11 1 8.7357 0.6326 1.6846 12 1 8.3744 -1.0453 3.3974 13 1 7.9741 -1.5854 1.0673 14 6 4.0391 2.7597 -0.3619 15 6 3.6955 3.0462 -1.8010 16 6 2.6940 3.9436 -2.1027 17 6 2.3753 4.2088 -3.4368 18 6 1.3359 5.1407 -3.7563 19 7 0.5119 5.8803 -4.0098 20 6 3.0761 3.5596 -4.4597 21 9 2.7739 3.8097 -5.7524 22 6 4.0777 2.6624 -4.1435 23 6 4.3837 2.4014 -2.8177 24 9 5.3601 1.5183 -2.5140 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6673 1.9596 0.8843 31 1 1.6858 1.9532 -0.8955 32 1 3.9722 1.8638 2.0207 33 1 3.4169 0.2018 1.7081 34 1 5.9724 -0.4420 4.1918 35 1 5.1221 2.7641 -0.2391 36 1 3.5980 3.5254 0.2763 37 1 2.1565 4.4412 -1.3090 38 1 4.6202 2.1604 -4.9310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237535373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:47 Heat of formation + Delta-G solvation = -54.772330 kcal Electronic energy + Delta-G solvation = -23258.814723 eV Core-core repulsion = 19543.625656 eV Total energy + Delta-G solvation = -3715.189067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.22235 -49.93404 -40.54718 -38.57844 -37.50335 -34.87268 -34.20468 -32.42579 -32.16309 -29.06369 -27.51895 -25.53365 -25.05795 -23.81007 -22.82057 -21.38187 -19.72951 -19.15755 -18.64330 -18.29629 -17.22923 -16.88440 -16.63635 -16.35058 -15.96869 -15.81768 -15.64861 -15.39997 -15.32529 -14.92396 -14.84857 -14.52786 -14.22328 -13.95293 -13.80750 -13.47359 -13.24161 -13.10499 -12.82060 -12.73994 -12.61781 -12.54368 -12.34637 -12.22254 -11.89502 -11.73373 -11.27688 -11.21762 -10.51386 -10.17216 -9.74415 -8.95122 -8.12163 -6.20043 -0.62393 -0.13074 1.43854 1.45810 1.47665 1.55208 1.61022 2.43616 2.47486 2.53905 2.70535 3.19117 3.21706 3.36755 3.51552 3.60737 3.99200 4.15946 4.26930 4.41385 4.46017 4.57446 4.66586 4.72223 4.76004 4.77972 4.81748 4.91443 4.99695 5.10702 5.22222 5.24633 5.37954 5.43721 5.52017 5.52285 5.75935 6.16617 6.27845 6.42552 6.69196 6.95858 7.48941 8.97767 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.004605 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.879993 B = 6078.957921 C = 7028.735901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.053 3.947 4 N -0.537 5.537 5 C 0.209 3.791 6 C -0.512 4.512 7 H 0.063 0.937 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.099 3.901 15 C -0.120 4.120 16 C 0.004 3.996 17 C -0.073 4.073 18 C 0.279 3.721 19 N -0.442 5.442 20 C 0.180 3.820 21 F -0.123 7.123 22 C -0.181 4.181 23 C 0.180 3.820 24 F -0.124 7.124 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.087 0.913 32 H -0.035 1.035 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.171 0.829 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 6.075 -13.698 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.261 5.261 5 C 0.083 3.917 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.576 5.576 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.028 4.028 15 C -0.121 4.121 16 C -0.016 4.016 17 C -0.078 4.078 18 C -0.036 4.036 19 N -0.117 5.117 20 C 0.157 3.843 21 F -0.102 7.102 22 C -0.201 4.201 23 C 0.159 3.841 24 F -0.102 7.102 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.105 0.895 32 H -0.017 1.017 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.188 0.812 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.497 6.799 -14.290 17.107 hybrid contribution 1.188 -0.376 1.013 1.606 sum -5.308 6.423 -13.278 15.676 Atomic orbital electron populations 1.21677 0.93931 1.02113 1.02092 1.21457 0.96353 0.96469 1.01235 1.22206 0.87645 0.97257 1.00324 1.62073 1.07148 1.25638 1.31271 1.19402 0.94774 0.93334 0.84199 1.21459 0.97678 1.39820 0.96131 0.91888 1.25778 1.02362 0.96231 0.94969 1.70064 1.38773 1.47092 1.01703 0.85603 0.80071 0.78911 0.77049 1.19274 1.21314 1.19671 1.20841 1.01219 0.90693 0.90071 1.19868 0.97959 0.98742 0.95563 1.20944 0.93056 0.93424 0.94213 1.15785 0.97609 1.00714 0.93685 1.25259 0.92528 0.92597 0.93235 1.81273 1.11450 1.11237 1.07758 1.17074 0.94378 0.95232 0.77569 1.91574 1.91946 1.92613 1.34023 1.21008 1.00709 1.02040 0.96311 1.17565 0.86470 0.87644 0.92459 1.91610 1.59220 1.65452 1.93889 0.91423 0.92169 0.92933 0.92139 0.94565 0.95974 0.89475 1.01687 0.96869 0.92963 0.90582 0.92860 0.81163 0.80250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.12 -3.66 6.01 30.59 0.18 -3.48 16 3 C 0.05 1.67 4.83 86.30 0.42 2.08 16 4 N -0.54 -20.40 4.37 -905.35 -3.96 -24.36 16 5 C 0.21 10.29 4.59 85.56 0.39 10.69 16 6 C -0.51 -27.57 8.61 25.60 0.22 -27.35 16 7 H 0.06 3.35 7.66 -2.91 -0.02 3.33 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.94 -54.76 13.29 21.45 0.28 -54.47 16 10 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.10 3.14 4.59 85.56 0.39 3.53 16 15 C -0.12 -2.83 4.48 -19.86 -0.09 -2.92 16 16 C 0.00 0.08 8.36 22.52 0.19 0.27 16 17 C -0.07 -1.31 5.74 -21.26 -0.12 -1.44 16 18 C 0.28 5.89 14.98 88.33 1.32 7.22 16 19 N -0.44 -11.30 18.54 19.00 0.35 -10.94 16 20 C 0.18 3.17 7.28 22.66 0.16 3.33 16 21 F -0.12 -2.30 16.81 44.97 0.76 -1.55 16 22 C -0.18 -3.21 9.99 22.32 0.22 -2.98 16 23 C 0.18 4.27 7.25 22.45 0.16 4.43 16 24 F -0.12 -3.78 16.74 44.97 0.75 -3.03 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.36 6.52 -2.39 -0.02 1.35 16 30 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 31 H 0.09 2.19 6.12 -2.39 -0.01 2.18 16 32 H -0.03 -1.84 8.00 -2.39 -0.02 -1.86 16 33 H 0.01 0.72 6.24 -2.39 -0.01 0.70 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.08 2.78 7.26 -2.39 -0.02 2.76 16 36 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 37 H 0.17 2.36 7.99 -2.91 -0.02 2.34 16 38 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -62.89 337.38 5.93 -56.96 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.08 Total: 0.54 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.63 Total: -8.51 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -3.32 Total: -89.77 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 1.51 Total: -4.57 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.89 5.93 -56.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237535373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.191 kcal (2) G-P(sol) polarization free energy of solvation -62.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds