Wall clock time and date at job start Tue Mar 31 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 N 1.39834 * 125.41846 * 270.28989 * 3 2 1 5 5 C 1.30216 * 110.12449 * 180.12350 * 4 3 2 6 6 C 1.46058 * 107.72183 * 359.63847 * 5 4 3 7 7 C 1.39617 * 133.87635 * 180.22873 * 6 5 4 8 8 C 1.39064 * 119.39516 * 179.97438 * 7 6 5 9 9 C 1.47707 * 119.93196 * 180.02562 * 8 7 6 10 10 N 1.32894 * 120.25698 * 223.86368 * 9 8 7 11 11 C 1.31997 * 120.07578 * 179.74237 * 10 9 8 12 12 C 1.39190 * 120.59879 * 0.51461 * 11 10 9 13 13 N 1.31615 * 120.51061 * 359.76231 * 12 11 10 14 14 C 1.33973 * 119.90153 * 359.97438 * 13 12 11 15 15 C 1.40758 * 120.28617 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99467 * 190.34411 * 15 14 13 17 17 C 1.40151 * 120.00518 * 10.34563 * 15 14 13 18 18 N 1.30703 * 119.99352 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00335 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46959 * 90.00072 * 19 17 15 21 21 H 1.48502 * 109.47198 * 209.99843 * 19 17 15 22 22 H 1.48495 * 109.47303 * 330.00296 * 19 17 15 23 23 C 1.40384 * 120.13865 * 0.03624 * 8 7 6 24 24 C 1.36167 * 120.66886 * 359.96155 * 23 8 7 25 25 C 1.36893 * 125.41434 * 89.99829 * 3 2 1 26 26 H 1.09007 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99351 * 1 2 3 28 28 H 1.08994 * 109.47332 * 60.00028 * 1 2 3 29 29 H 1.08996 * 109.47192 * 240.00110 * 2 1 3 30 30 H 1.09002 * 109.47091 * 120.00138 * 2 1 3 31 31 H 1.08006 * 126.14222 * 179.89739 * 5 4 3 32 32 H 1.07996 * 120.30082 * 359.97004 * 7 6 5 33 33 H 1.08003 * 119.69830 * 180.23254 * 11 10 9 34 34 H 1.08002 * 119.74603 * 179.74275 * 12 11 10 35 35 H 0.97001 * 119.99415 * 180.02562 * 18 17 15 36 36 H 1.07998 * 119.66129 * 179.97438 * 23 8 7 37 37 H 1.08001 * 119.89628 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2830 2.1472 -1.1395 5 6 2.7058 3.3299 -0.7961 6 6 2.7269 3.3881 0.6632 7 6 3.0755 4.3749 1.5874 8 6 2.9789 4.1010 2.9473 9 6 3.3440 5.1365 3.9354 10 7 4.0756 4.8192 4.9986 11 6 4.4041 5.7484 5.8766 12 6 3.9822 7.0639 5.7075 13 7 3.2523 7.4029 4.6660 14 6 2.9115 6.4772 3.7595 15 6 2.1307 6.8306 2.6429 16 1 1.7186 6.0612 2.0069 17 6 1.8882 8.1809 2.3565 18 7 2.3866 9.1120 3.1266 19 14 0.8526 8.6500 0.8743 20 1 -0.5748 8.7354 1.2748 21 1 1.3005 9.9669 0.3543 22 1 1.0089 7.6206 -0.1844 23 6 2.5351 2.8425 3.3832 24 6 2.1941 1.8771 2.4854 25 6 2.2827 2.1291 1.1157 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9861 4.1266 -1.4694 32 1 3.4171 5.3419 1.2491 33 1 5.0020 5.4845 6.7365 34 1 4.2555 7.8123 6.4366 35 1 2.2184 10.0466 2.9286 36 1 2.4634 2.6380 4.4412 37 1 1.8538 0.9134 2.8345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245233380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:07 Heat of formation + Delta-G solvation = 127.068375 kcal Electronic energy + Delta-G solvation = -22503.671372 eV Core-core repulsion = 19247.056697 eV Total energy + Delta-G solvation = -3256.614676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82778 -39.03926 -36.62674 -34.31727 -34.16453 -32.25784 -31.39240 -30.00733 -29.28860 -27.86002 -26.17558 -23.82066 -22.99584 -22.57715 -21.70385 -20.47642 -20.08243 -17.71754 -16.86636 -16.50185 -16.05325 -15.16125 -15.02901 -14.75105 -14.39908 -14.26094 -14.09898 -13.52661 -13.14327 -12.97182 -12.74902 -12.64680 -12.40917 -12.09616 -11.54049 -11.48751 -11.41826 -11.28274 -11.20875 -10.81291 -10.55479 -10.38606 -10.27194 -9.89643 -9.59062 -9.52710 -9.14959 -8.27336 -7.91715 -7.53365 -7.08707 -6.61052 -4.73298 1.45858 1.81419 2.53838 2.64976 2.88687 2.95722 2.98890 3.02233 3.15427 3.78264 4.36753 4.56533 4.59202 4.93597 4.99759 5.05595 5.18185 5.27621 5.39690 5.46401 5.63508 5.69451 5.78194 5.92886 5.98771 6.02831 6.05499 6.20559 6.30701 6.48506 6.54978 6.65480 6.84766 6.89608 6.99464 7.07470 7.28704 7.39850 7.49931 7.62818 7.96655 7.98717 8.32063 8.58080 9.17153 9.75930 10.02173 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.005615 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.289120 B = 4985.347528 C = 6437.983479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.142 3.858 3 N -0.414 5.414 4 N -0.267 5.267 5 C 0.074 3.926 6 C -0.179 4.179 7 C -0.026 4.026 8 C -0.015 4.015 9 C -0.022 4.022 10 N -0.415 5.415 11 C -0.117 4.117 12 C 0.086 3.914 13 N -0.454 5.454 14 C 0.222 3.778 15 C -0.406 4.406 16 H 0.100 0.900 17 C 0.067 3.933 18 N -0.707 5.707 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.046 4.046 24 C -0.156 4.156 25 C 0.117 3.883 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.193 0.807 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.279 0.721 36 H 0.125 0.875 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -9.693 -5.140 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 N -0.204 5.204 4 N -0.079 5.079 5 C -0.123 4.123 6 C -0.187 4.187 7 C -0.048 4.048 8 C -0.018 4.018 9 C -0.169 4.169 10 N -0.127 5.127 11 C -0.278 4.278 12 C -0.085 4.085 13 N -0.170 5.170 14 C 0.097 3.903 15 C -0.436 4.436 16 H 0.118 0.882 17 C -0.161 4.161 18 N -0.327 5.327 19 Si 0.730 3.270 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.067 4.067 24 C -0.178 4.178 25 C 0.004 3.996 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.209 0.791 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.628 -10.368 -6.093 12.309 hybrid contribution -0.247 0.849 0.294 0.931 sum -2.875 -9.519 -5.799 11.511 Atomic orbital electron populations 1.22222 0.95171 1.02398 1.03201 1.21406 0.94602 0.78458 1.03515 1.48108 1.59275 1.11839 1.01175 1.76417 1.17477 1.04643 1.09373 1.25037 0.98816 0.95017 0.93455 1.19809 1.10825 0.95028 0.93010 1.20915 0.95323 0.97643 0.90918 1.18043 0.99948 0.92369 0.91398 1.20066 1.06947 0.93305 0.96585 1.67690 1.07871 1.36208 1.00921 1.22541 1.11448 0.91702 1.02144 1.23521 0.94130 0.94930 0.95930 1.69524 1.12936 1.33254 1.01332 1.19228 0.91321 0.87213 0.92515 1.19858 1.23883 0.92777 1.07130 0.88172 1.26196 0.95434 0.96551 0.97894 1.70043 1.29524 1.01435 1.31659 0.86297 0.80374 0.79107 0.81238 1.19093 1.19810 1.17764 1.20824 0.94864 0.91995 0.99064 1.19529 1.09134 1.00440 0.88706 1.18788 0.99781 0.91716 0.89265 0.91071 0.91959 0.91914 0.89495 0.89596 0.79076 0.84253 0.85501 0.85287 0.90952 0.85737 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.14 1.57 7.07 -4.04 -0.03 1.54 16 3 N -0.41 -6.39 3.64 -58.63 -0.21 -6.60 16 4 N -0.27 -4.33 12.40 31.89 0.40 -3.94 16 5 C 0.07 1.18 12.29 -15.10 -0.19 0.99 16 6 C -0.18 -3.26 6.35 -105.22 -0.67 -3.93 16 7 C -0.03 -0.53 7.59 -38.76 -0.29 -0.82 16 8 C -0.01 -0.31 5.29 -104.91 -0.55 -0.87 16 9 C -0.02 -0.54 6.41 -82.11 -0.53 -1.06 16 10 N -0.41 -9.95 10.30 -8.98 -0.09 -10.04 16 11 C -0.12 -2.63 11.22 -17.13 -0.19 -2.82 16 12 C 0.09 1.99 11.22 -17.29 -0.19 1.79 16 13 N -0.45 -11.98 8.12 -10.72 -0.09 -12.07 16 14 C 0.22 5.78 6.50 -84.55 -0.55 5.23 16 15 C -0.41 -10.04 7.44 -37.91 -0.28 -10.32 16 16 H 0.10 2.34 5.38 -52.48 -0.28 2.06 16 17 C 0.07 1.58 5.49 -17.31 -0.10 1.48 16 18 N -0.71 -17.59 11.54 55.56 0.64 -16.95 16 19 Si 0.91 17.41 29.56 -169.99 -5.03 12.39 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 23 C -0.05 -0.87 9.57 -39.52 -0.38 -1.25 16 24 C -0.16 -2.57 9.91 -39.83 -0.39 -2.97 16 25 C 0.12 2.03 6.87 -84.08 -0.58 1.45 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 32 H 0.14 2.82 6.72 -52.49 -0.35 2.47 16 33 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 34 H 0.13 2.56 8.06 -52.49 -0.42 2.13 16 35 H 0.28 6.26 8.29 -40.82 -0.34 5.93 16 36 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -30.02 321.70 -8.07 -38.09 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.00 Total: 7.13 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -4.54 Total: -12.86 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.64 Total: -49.60 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.02 -8.07 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245233380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.163 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds