Wall clock time and date at job start Tue Mar 31 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 N 1.39834 * 125.41846 * 270.28989 * 3 2 1 5 5 C 1.30216 * 110.12449 * 180.12350 * 4 3 2 6 6 C 1.46058 * 107.72183 * 359.63847 * 5 4 3 7 7 C 1.39617 * 133.87635 * 180.22873 * 6 5 4 8 8 C 1.39064 * 119.39516 * 179.97438 * 7 6 5 9 9 C 1.47707 * 119.93196 * 180.02562 * 8 7 6 10 10 N 1.32894 * 120.25698 * 223.86368 * 9 8 7 11 11 C 1.31997 * 120.07578 * 179.74237 * 10 9 8 12 12 C 1.39190 * 120.59879 * 0.51461 * 11 10 9 13 13 N 1.31615 * 120.51061 * 359.76231 * 12 11 10 14 14 C 1.33973 * 119.90153 * 359.97438 * 13 12 11 15 15 C 1.40758 * 120.28617 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99467 * 190.34411 * 15 14 13 17 17 C 1.40151 * 120.00518 * 10.34563 * 15 14 13 18 18 N 1.30703 * 119.99352 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00335 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46959 * 90.00072 * 19 17 15 21 21 H 1.48502 * 109.47198 * 209.99843 * 19 17 15 22 22 H 1.48495 * 109.47303 * 330.00296 * 19 17 15 23 23 C 1.40384 * 120.13865 * 0.03624 * 8 7 6 24 24 C 1.36167 * 120.66886 * 359.96155 * 23 8 7 25 25 C 1.36893 * 125.41434 * 89.99829 * 3 2 1 26 26 H 1.09007 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99351 * 1 2 3 28 28 H 1.08994 * 109.47332 * 60.00028 * 1 2 3 29 29 H 1.08996 * 109.47192 * 240.00110 * 2 1 3 30 30 H 1.09002 * 109.47091 * 120.00138 * 2 1 3 31 31 H 1.08006 * 126.14222 * 179.89739 * 5 4 3 32 32 H 1.07996 * 120.30082 * 359.97004 * 7 6 5 33 33 H 1.08003 * 119.69830 * 180.23254 * 11 10 9 34 34 H 1.08002 * 119.74603 * 179.74275 * 12 11 10 35 35 H 0.97001 * 119.99415 * 180.02562 * 18 17 15 36 36 H 1.07998 * 119.66129 * 179.97438 * 23 8 7 37 37 H 1.08001 * 119.89628 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2830 2.1472 -1.1395 5 6 2.7058 3.3299 -0.7961 6 6 2.7269 3.3881 0.6632 7 6 3.0755 4.3749 1.5874 8 6 2.9789 4.1010 2.9473 9 6 3.3440 5.1365 3.9354 10 7 4.0756 4.8192 4.9986 11 6 4.4041 5.7484 5.8766 12 6 3.9822 7.0639 5.7075 13 7 3.2523 7.4029 4.6660 14 6 2.9115 6.4772 3.7595 15 6 2.1307 6.8306 2.6429 16 1 1.7186 6.0612 2.0069 17 6 1.8882 8.1809 2.3565 18 7 2.3866 9.1120 3.1266 19 14 0.8526 8.6500 0.8743 20 1 -0.5748 8.7354 1.2748 21 1 1.3005 9.9669 0.3543 22 1 1.0089 7.6206 -0.1844 23 6 2.5351 2.8425 3.3832 24 6 2.1941 1.8771 2.4854 25 6 2.2827 2.1291 1.1157 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9861 4.1266 -1.4694 32 1 3.4171 5.3419 1.2491 33 1 5.0020 5.4845 6.7365 34 1 4.2555 7.8123 6.4366 35 1 2.2184 10.0466 2.9286 36 1 2.4634 2.6380 4.4412 37 1 1.8538 0.9134 2.8345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245233380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:07 Heat of formation + Delta-G solvation = 109.853208 kcal Electronic energy + Delta-G solvation = -22504.417878 eV Core-core repulsion = 19247.056697 eV Total energy + Delta-G solvation = -3257.361181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13165 -40.80654 -38.05319 -35.97769 -35.33024 -34.00948 -33.00815 -31.39078 -30.62032 -29.27615 -27.95335 -25.08991 -24.33501 -24.16012 -23.33552 -21.99022 -21.27628 -19.51576 -18.14720 -17.94296 -17.75998 -16.79633 -16.50496 -16.07027 -15.87828 -15.49329 -15.42827 -14.81803 -14.74790 -14.41780 -14.27170 -13.98533 -13.63092 -13.23578 -13.12100 -12.99905 -12.81744 -12.65593 -12.39200 -12.16405 -12.00367 -11.89067 -11.72715 -11.56626 -11.44058 -11.05088 -10.78003 -9.86789 -9.45433 -9.32505 -8.58536 -8.35490 -6.57189 0.07989 0.25339 0.83337 1.23856 1.40525 1.51758 1.53166 1.56001 1.61472 2.18266 2.76443 2.93466 3.55547 3.61963 3.81890 3.85119 3.92608 4.17111 4.20193 4.22227 4.33197 4.39550 4.42254 4.55754 4.63925 4.77543 4.80365 4.86838 4.93042 5.05099 5.12956 5.17281 5.22618 5.23920 5.48383 5.59794 5.81620 5.86629 5.95986 6.16923 6.22103 6.51491 6.70302 6.75353 7.35095 7.92786 8.29123 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.005615 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.289120 B = 4985.347528 C = 6437.983479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 N -0.410 5.410 4 N -0.273 5.273 5 C 0.074 3.926 6 C -0.197 4.197 7 C -0.030 4.030 8 C -0.046 4.046 9 C -0.029 4.029 10 N -0.430 5.430 11 C -0.119 4.119 12 C 0.072 3.928 13 N -0.490 5.490 14 C 0.191 3.809 15 C -0.424 4.424 16 H 0.105 0.895 17 C 0.027 3.973 18 N -0.745 5.745 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.264 1.264 22 H -0.245 1.245 23 C -0.056 4.056 24 C -0.139 4.139 25 C 0.114 3.886 26 H 0.102 0.898 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.221 0.779 32 H 0.125 0.875 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.286 0.714 36 H 0.126 0.874 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 -11.650 -6.483 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.200 5.200 4 N -0.085 5.085 5 C -0.123 4.123 6 C -0.205 4.205 7 C -0.051 4.051 8 C -0.049 4.049 9 C -0.176 4.176 10 N -0.143 5.143 11 C -0.279 4.279 12 C -0.098 4.098 13 N -0.207 5.207 14 C 0.066 3.934 15 C -0.455 4.455 16 H 0.123 0.877 17 C -0.197 4.197 18 N -0.366 5.366 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.188 1.188 22 H -0.168 1.168 23 C -0.077 4.077 24 C -0.161 4.161 25 C -0.001 4.001 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.237 0.763 32 H 0.143 0.857 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.426 -12.361 -7.429 14.823 hybrid contribution 0.042 1.307 0.722 1.494 sum -3.384 -11.054 -6.706 13.364 Atomic orbital electron populations 1.22173 0.94160 1.04075 1.01879 1.21870 0.95409 0.76379 1.05406 1.48538 1.58256 1.12941 1.00223 1.76410 1.17444 1.04810 1.09878 1.25501 0.98380 0.95691 0.92750 1.20021 1.11168 0.95195 0.94119 1.20753 0.95851 0.97622 0.90911 1.18101 1.02327 0.93040 0.91390 1.20477 1.06315 0.93706 0.97118 1.67778 1.08345 1.36706 1.01426 1.23087 1.10887 0.91349 1.02626 1.24013 0.93738 0.96170 0.95841 1.69468 1.14435 1.34315 1.02497 1.19666 0.92303 0.88170 0.93270 1.20101 1.24370 0.93742 1.07276 0.87729 1.27061 0.96169 0.95952 1.00531 1.70119 1.30856 1.02024 1.33559 0.85253 0.78247 0.79195 0.77663 1.19016 1.18823 1.16752 1.20831 0.95624 0.91626 0.99653 1.19773 1.07129 1.01143 0.88024 1.18988 0.99202 0.91795 0.90085 0.87919 0.93149 0.93287 0.87934 0.87456 0.76253 0.85665 0.82193 0.82478 0.90321 0.85617 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 71.98 0.74 -1.99 16 2 C 0.13 2.40 7.07 86.38 0.61 3.01 16 3 N -0.41 -11.56 3.64 -339.40 -1.24 -12.80 16 4 N -0.27 -8.24 12.40 -53.00 -0.66 -8.90 16 5 C 0.07 2.22 12.29 86.96 1.07 3.29 16 6 C -0.20 -7.02 6.35 -20.25 -0.13 -7.15 16 7 C -0.03 -1.20 7.59 22.80 0.17 -1.03 16 8 C -0.05 -1.99 5.29 -20.05 -0.11 -2.10 16 9 C -0.03 -1.48 6.41 42.41 0.27 -1.21 16 10 N -0.43 -20.97 10.30 -182.33 -1.88 -22.85 16 11 C -0.12 -5.36 11.22 84.90 0.95 -4.40 16 12 C 0.07 3.39 11.22 84.95 0.95 4.34 16 13 N -0.49 -26.73 8.12 -187.84 -1.52 -28.25 16 14 C 0.19 10.32 6.50 40.36 0.26 10.58 16 15 C -0.42 -21.69 7.44 23.35 0.17 -21.51 16 16 H 0.10 5.06 5.38 -2.91 -0.02 5.05 16 17 C 0.03 1.29 5.49 85.33 0.47 1.76 16 18 N -0.74 -38.10 11.54 21.86 0.25 -37.84 16 19 Si 0.98 35.85 29.56 68.60 2.03 37.88 16 20 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 23 C -0.06 -2.09 9.57 22.31 0.21 -1.87 16 24 C -0.14 -4.30 9.91 22.11 0.22 -4.08 16 25 C 0.11 3.71 6.87 39.34 0.27 3.98 16 26 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.11 1.56 8.12 -2.39 -0.02 1.54 16 31 H 0.22 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.13 5.31 6.72 -2.91 -0.02 5.30 16 33 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 34 H 0.16 6.22 8.06 -2.91 -0.02 6.20 16 35 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -66.77 321.70 4.23 -62.54 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.10 Total: 28.62 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 6.14 Total: -18.39 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -5.04 Total: -110.64 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -66.77 4.23 -62.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245233380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.392 kcal (2) G-P(sol) polarization free energy of solvation -66.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds