Wall clock time and date at job start Tue Mar 31 2020 07:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39820 * 125.39720 * 2 1 4 4 C 1.30241 * 110.10127 * 180.02562 * 3 2 1 5 5 C 1.45881 * 107.67215 * 359.97438 * 4 3 2 6 6 C 1.39995 * 134.14691 * 179.97438 * 5 4 3 7 7 C 1.38656 * 117.99204 * 180.02562 * 6 5 4 8 8 N 1.39854 * 120.33239 * 180.02562 * 7 6 5 9 9 C 1.38772 * 120.00335 * 147.81215 * 8 7 6 10 10 C 1.39618 * 119.84552 * 334.98456 * 9 8 7 11 11 C 1.36298 * 120.15637 * 179.97438 * 10 9 8 12 12 C 1.40902 * 119.84253 * 0.02562 * 11 10 9 13 13 C 1.41099 * 120.15496 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00654 * 155.99182 * 13 12 11 15 15 C 1.39844 * 119.99478 * 335.99083 * 13 12 11 16 16 N 1.30908 * 120.00182 * 326.71195 * 15 13 12 17 17 Si 1.86800 * 119.99608 * 146.71456 * 15 13 12 18 18 H 1.48509 * 109.47365 * 84.99327 * 17 15 13 19 19 H 1.48504 * 109.47210 * 204.99178 * 17 15 13 20 20 H 1.48500 * 109.47622 * 324.99440 * 17 15 13 21 21 C 1.40908 * 119.69856 * 359.97438 * 12 11 10 22 22 C 1.36304 * 119.83611 * 0.02562 * 21 12 11 23 23 C 1.39507 * 119.33775 * 0.27291 * 7 6 5 24 24 N 1.31421 * 121.46799 * 359.40473 * 23 7 6 25 25 C 1.32745 * 121.73796 * 0.62498 * 24 23 7 26 26 H 1.09004 * 109.46762 * 269.98210 * 1 2 3 27 27 H 1.09003 * 109.47041 * 29.97277 * 1 2 3 28 28 H 1.08997 * 109.47675 * 149.98219 * 1 2 3 29 29 H 1.08001 * 126.16627 * 180.02562 * 4 3 2 30 30 H 1.07992 * 121.00331 * 0.02562 * 6 5 4 31 31 H 0.97002 * 120.00287 * 327.81127 * 8 7 6 32 32 H 1.07999 * 119.91958 * 359.70159 * 10 9 8 33 33 H 1.07998 * 120.07981 * 179.97438 * 11 10 9 34 34 H 0.97002 * 120.00111 * 180.02562 * 16 15 13 35 35 H 1.07993 * 120.08211 * 179.97438 * 21 12 11 36 36 H 1.08004 * 119.92316 * 179.97438 * 22 21 12 37 37 H 1.07997 * 119.26462 * 179.70794 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2749 1.1398 0.0000 4 6 3.5312 0.7962 -0.0005 5 6 3.5916 -0.6614 -0.0003 6 6 4.6357 -1.5940 -0.0011 7 6 4.3055 -2.9406 -0.0011 8 7 5.3096 -3.9141 -0.0013 9 6 5.1001 -5.1273 0.6388 10 6 4.1796 -5.2109 1.6853 11 6 3.9684 -6.3995 2.3181 12 6 4.6820 -7.5453 1.9143 13 6 4.4690 -8.7790 2.5652 14 1 4.6875 -9.7045 2.0533 15 6 3.9749 -8.8031 3.8732 16 7 4.2974 -7.8516 4.7124 17 14 2.8548 -10.1933 4.4229 18 1 3.6784 -11.3477 4.8641 19 1 2.0076 -9.7298 5.5510 20 1 1.9880 -10.6079 3.2906 21 6 5.6095 -7.4537 0.8575 22 6 5.8107 -6.2587 0.2335 23 6 2.9616 -3.3148 -0.0061 24 7 2.0000 -2.4190 0.0008 25 6 2.2585 -1.1170 0.0006 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 4.3759 1.4690 -0.0003 30 1 5.6672 -1.2741 -0.0017 31 1 6.1527 -3.7412 -0.4490 32 1 3.6368 -4.3308 1.9969 33 1 3.2564 -6.4627 3.1276 34 1 3.9550 -7.8686 5.6198 35 1 6.1602 -8.3279 0.5432 36 1 6.5216 -6.1868 -0.5764 37 1 2.7057 -4.3640 -0.0109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249663199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:16 Heat of formation + Delta-G solvation = 131.743595 kcal Electronic energy + Delta-G solvation = -21844.924678 eV Core-core repulsion = 18588.512735 eV Total energy + Delta-G solvation = -3256.411943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32630 -38.92506 -37.41232 -35.18292 -33.67784 -33.12527 -31.02719 -29.86930 -29.43485 -28.27776 -26.43737 -24.76010 -23.85010 -22.18244 -21.22111 -20.78021 -20.26892 -17.73643 -17.40154 -17.09376 -16.52415 -15.75674 -15.51199 -15.17573 -14.88545 -14.14076 -13.95570 -13.51205 -13.42466 -13.17517 -12.81460 -12.71852 -12.51917 -12.35301 -12.12979 -11.96571 -11.70833 -11.24850 -11.13111 -10.99053 -10.77425 -10.47042 -9.97534 -9.63051 -9.46651 -9.29686 -8.96893 -8.77170 -7.87052 -7.69085 -7.02232 -6.52244 -4.23945 0.90741 1.55648 2.26798 2.53730 2.74254 2.93315 3.04746 3.05900 3.20436 3.88052 3.89683 4.01240 4.34423 4.46654 4.55054 4.75841 5.08531 5.12844 5.21456 5.38187 5.45917 5.57152 5.60066 5.78542 6.08784 6.12744 6.19171 6.38630 6.50336 6.77500 6.80613 6.95803 6.99208 7.10904 7.36187 7.46600 7.54659 7.59977 7.94412 8.05408 8.10811 8.25699 8.38636 8.53319 8.79984 8.91333 10.01581 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.003491 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.464604 B = 8017.844025 C = 8834.017407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.401 5.401 3 N -0.244 5.244 4 C 0.070 3.930 5 C -0.188 4.188 6 C -0.086 4.086 7 C 0.125 3.875 8 N -0.668 5.668 9 C 0.019 3.981 10 C -0.123 4.123 11 C -0.154 4.154 12 C 0.103 3.897 13 C -0.470 4.470 14 H 0.081 0.919 15 C 0.089 3.911 16 N -0.770 5.770 17 Si 0.893 3.107 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.258 1.258 21 C -0.207 4.207 22 C -0.112 4.112 23 C 0.142 3.858 24 N -0.479 5.479 25 C 0.266 3.734 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.196 0.804 30 H 0.135 0.865 31 H 0.397 0.603 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.283 0.717 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 11.313 -6.752 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.195 5.195 3 N -0.058 5.058 4 C -0.128 4.128 5 C -0.198 4.198 6 C -0.120 4.120 7 C 0.020 3.980 8 N -0.291 5.291 9 C -0.075 4.075 10 C -0.143 4.143 11 C -0.174 4.174 12 C 0.100 3.900 13 C -0.498 4.498 14 H 0.099 0.901 15 C -0.132 4.132 16 N -0.393 5.393 17 Si 0.716 3.284 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.182 1.182 21 C -0.227 4.227 22 C -0.133 4.133 23 C -0.031 4.031 24 N -0.192 5.192 25 C 0.029 3.971 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.213 0.787 30 H 0.153 0.847 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.123 12.073 -6.414 14.280 hybrid contribution 1.231 -0.900 0.358 1.566 sum -2.893 11.173 -6.057 13.034 Atomic orbital electron populations 1.21693 0.74022 1.03906 1.02829 1.47857 1.05696 0.99991 1.65930 1.76557 1.02754 1.08171 1.18269 1.24898 0.94636 0.92862 1.00440 1.20209 0.93718 0.94090 1.11810 1.20503 0.98416 0.90044 1.03069 1.18451 0.90362 0.88870 1.00277 1.41378 1.15109 1.13573 1.59019 1.17098 1.06854 0.84604 0.98969 1.20218 1.00551 0.97489 0.96073 1.20630 1.02425 0.92575 1.01725 1.17524 0.88843 0.92813 0.90849 1.19400 1.38913 0.93889 0.97598 0.90077 1.25889 0.94379 0.96690 0.96292 1.69959 1.32075 1.32182 1.05039 0.86579 0.81077 0.81697 0.78998 1.19326 1.20073 1.18176 1.20498 1.03038 0.95948 1.03247 1.19961 1.01299 0.92166 0.99892 1.22840 0.86800 0.98686 0.94771 1.66646 1.37081 0.98702 1.16778 1.18852 0.88504 0.88006 1.01774 0.91594 0.89956 0.89443 0.78712 0.84672 0.76797 0.89136 0.87769 0.90570 0.88624 0.89119 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.26 11.44 59.85 0.68 1.94 16 2 N -0.40 -5.87 4.04 -67.17 -0.27 -6.15 16 3 N -0.24 -3.40 12.40 31.86 0.39 -3.01 16 4 C 0.07 0.86 12.29 -15.17 -0.19 0.68 16 5 C -0.19 -2.78 6.37 -105.18 -0.67 -3.45 16 6 C -0.09 -1.22 10.15 -38.77 -0.39 -1.61 16 7 C 0.13 2.02 5.89 -83.57 -0.49 1.53 16 8 N -0.67 -10.96 5.44 -8.19 -0.04 -11.00 16 9 C 0.02 0.37 6.08 -83.69 -0.51 -0.13 16 10 C -0.12 -2.71 7.79 -39.77 -0.31 -3.02 16 11 C -0.15 -3.78 8.74 -39.27 -0.34 -4.13 16 12 C 0.10 2.59 5.55 -106.79 -0.59 2.00 16 13 C -0.47 -11.95 8.92 -37.90 -0.34 -12.29 16 14 H 0.08 1.99 8.02 -52.49 -0.42 1.57 16 15 C 0.09 2.16 4.72 -17.34 -0.08 2.08 16 16 N -0.77 -19.29 11.98 55.54 0.67 -18.63 16 17 Si 0.89 17.91 29.66 -169.99 -5.04 12.87 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.21 -4.76 9.74 -39.27 -0.38 -5.14 16 22 C -0.11 -2.30 9.87 -39.76 -0.39 -2.70 16 23 C 0.14 2.44 8.88 -17.25 -0.15 2.29 16 24 N -0.48 -8.31 10.38 -12.15 -0.13 -8.44 16 25 C 0.27 4.37 7.97 -155.96 -1.24 3.13 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.40 5.47 8.88 -40.82 -0.36 5.11 16 32 H 0.09 1.94 6.30 -52.49 -0.33 1.61 16 33 H 0.10 2.66 6.69 -52.49 -0.35 2.31 16 34 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.17 3.04 6.59 -52.49 -0.35 2.70 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -28.72 321.06 -8.89 -37.61 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.90 Total: 10.73 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -5.40 Total: -18.83 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.62 Total: -47.22 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.04 Total: 12.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.72 -8.89 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249663199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.357 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds