Wall clock time and date at job start Tue Mar 31 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39820 * 125.39720 * 2 1 4 4 C 1.30241 * 110.10127 * 180.02562 * 3 2 1 5 5 C 1.45881 * 107.67215 * 359.97438 * 4 3 2 6 6 C 1.39995 * 134.14691 * 179.97438 * 5 4 3 7 7 C 1.38656 * 117.99204 * 180.02562 * 6 5 4 8 8 N 1.39854 * 120.33239 * 180.02562 * 7 6 5 9 9 C 1.38772 * 120.00335 * 147.81215 * 8 7 6 10 10 C 1.39618 * 119.84552 * 334.98456 * 9 8 7 11 11 C 1.36298 * 120.15637 * 179.97438 * 10 9 8 12 12 C 1.40902 * 119.84253 * 0.02562 * 11 10 9 13 13 C 1.41099 * 120.15496 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00654 * 155.99182 * 13 12 11 15 15 C 1.39844 * 119.99478 * 335.99083 * 13 12 11 16 16 N 1.30908 * 120.00182 * 326.71195 * 15 13 12 17 17 Si 1.86800 * 119.99608 * 146.71456 * 15 13 12 18 18 H 1.48509 * 109.47365 * 84.99327 * 17 15 13 19 19 H 1.48504 * 109.47210 * 204.99178 * 17 15 13 20 20 H 1.48500 * 109.47622 * 324.99440 * 17 15 13 21 21 C 1.40908 * 119.69856 * 359.97438 * 12 11 10 22 22 C 1.36304 * 119.83611 * 0.02562 * 21 12 11 23 23 C 1.39507 * 119.33775 * 0.27291 * 7 6 5 24 24 N 1.31421 * 121.46799 * 359.40473 * 23 7 6 25 25 C 1.32745 * 121.73796 * 0.62498 * 24 23 7 26 26 H 1.09004 * 109.46762 * 269.98210 * 1 2 3 27 27 H 1.09003 * 109.47041 * 29.97277 * 1 2 3 28 28 H 1.08997 * 109.47675 * 149.98219 * 1 2 3 29 29 H 1.08001 * 126.16627 * 180.02562 * 4 3 2 30 30 H 1.07992 * 121.00331 * 0.02562 * 6 5 4 31 31 H 0.97002 * 120.00287 * 327.81127 * 8 7 6 32 32 H 1.07999 * 119.91958 * 359.70159 * 10 9 8 33 33 H 1.07998 * 120.07981 * 179.97438 * 11 10 9 34 34 H 0.97002 * 120.00111 * 180.02562 * 16 15 13 35 35 H 1.07993 * 120.08211 * 179.97438 * 21 12 11 36 36 H 1.08004 * 119.92316 * 179.97438 * 22 21 12 37 37 H 1.07997 * 119.26462 * 179.70794 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2749 1.1398 0.0000 4 6 3.5312 0.7962 -0.0005 5 6 3.5916 -0.6614 -0.0003 6 6 4.6357 -1.5940 -0.0011 7 6 4.3055 -2.9406 -0.0011 8 7 5.3096 -3.9141 -0.0013 9 6 5.1001 -5.1273 0.6388 10 6 4.1796 -5.2109 1.6853 11 6 3.9684 -6.3995 2.3181 12 6 4.6820 -7.5453 1.9143 13 6 4.4690 -8.7790 2.5652 14 1 4.6875 -9.7045 2.0533 15 6 3.9749 -8.8031 3.8732 16 7 4.2974 -7.8516 4.7124 17 14 2.8548 -10.1933 4.4229 18 1 3.6784 -11.3477 4.8641 19 1 2.0076 -9.7298 5.5510 20 1 1.9880 -10.6079 3.2906 21 6 5.6095 -7.4537 0.8575 22 6 5.8107 -6.2587 0.2335 23 6 2.9616 -3.3148 -0.0061 24 7 2.0000 -2.4190 0.0008 25 6 2.2585 -1.1170 0.0006 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 4.3759 1.4690 -0.0003 30 1 5.6672 -1.2741 -0.0017 31 1 6.1527 -3.7412 -0.4490 32 1 3.6368 -4.3308 1.9969 33 1 3.2564 -6.4627 3.1276 34 1 3.9550 -7.8686 5.6198 35 1 6.1602 -8.3279 0.5432 36 1 6.5216 -6.1868 -0.5764 37 1 2.7057 -4.3640 -0.0109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249663199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:15 Heat of formation + Delta-G solvation = 115.897155 kcal Electronic energy + Delta-G solvation = -21845.611831 eV Core-core repulsion = 18588.512735 eV Total energy + Delta-G solvation = -3257.099096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47086 -40.34776 -38.88585 -36.68026 -35.13266 -34.41491 -32.28366 -31.53685 -30.96333 -29.70523 -27.51376 -26.39897 -25.09003 -23.53459 -22.90500 -22.05499 -21.66354 -19.26507 -18.83115 -18.45480 -17.83660 -17.08899 -16.86230 -16.70322 -16.09458 -15.76171 -15.10527 -14.86329 -14.62493 -14.54039 -14.30996 -14.06671 -13.86651 -13.77011 -13.48037 -13.30606 -13.18883 -12.97210 -12.73616 -12.35520 -12.08905 -11.92485 -11.69146 -11.29612 -10.94832 -10.72151 -10.47533 -9.96545 -9.46440 -9.31479 -8.77563 -8.03920 -6.07449 -0.24900 0.29413 1.06301 1.13520 1.24476 1.39117 1.48239 1.50151 1.59026 2.21462 2.56911 2.65956 2.82218 3.29421 3.42271 3.70847 3.75736 3.90568 4.06304 4.37936 4.39088 4.40008 4.46223 4.54012 4.63995 4.66000 4.94195 5.03735 5.07613 5.18099 5.28080 5.35520 5.47190 5.65696 5.74823 5.82064 5.90452 6.11775 6.30885 6.46557 6.55680 6.74657 6.88286 6.97179 7.04817 7.17176 8.26955 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.003491 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.464604 B = 8017.844025 C = 8834.017407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.412 5.412 3 N -0.259 5.259 4 C 0.090 3.910 5 C -0.202 4.202 6 C -0.055 4.055 7 C 0.105 3.895 8 N -0.661 5.661 9 C 0.050 3.950 10 C -0.129 4.129 11 C -0.174 4.174 12 C 0.070 3.930 13 C -0.512 4.512 14 H 0.077 0.923 15 C 0.052 3.948 16 N -0.809 5.809 17 Si 0.963 3.037 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.260 1.260 21 C -0.216 4.216 22 C -0.115 4.115 23 C 0.126 3.874 24 N -0.501 5.501 25 C 0.247 3.753 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.244 0.756 30 H 0.175 0.825 31 H 0.415 0.585 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.289 0.711 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 13.670 -7.890 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.206 5.206 3 N -0.071 5.071 4 C -0.108 4.108 5 C -0.212 4.212 6 C -0.088 4.088 7 C 0.002 3.998 8 N -0.287 5.287 9 C -0.046 4.046 10 C -0.150 4.150 11 C -0.194 4.194 12 C 0.067 3.933 13 C -0.540 4.540 14 H 0.095 0.905 15 C -0.166 4.166 16 N -0.433 5.433 17 Si 0.783 3.217 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.184 1.184 21 C -0.236 4.236 22 C -0.135 4.135 23 C -0.045 4.045 24 N -0.215 5.215 25 C 0.009 3.991 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.260 0.740 30 H 0.192 0.808 31 H 0.253 0.747 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.107 14.470 -7.581 16.629 hybrid contribution 0.921 -1.282 0.546 1.670 sum -2.186 13.188 -7.035 15.106 Atomic orbital electron populations 1.21908 0.72546 1.04970 1.03599 1.48228 1.06819 0.99599 1.65924 1.76574 1.03502 1.08036 1.18993 1.25671 0.95297 0.92045 0.97789 1.20591 0.93124 0.95673 1.11857 1.20877 1.00163 0.88737 0.99071 1.18452 0.89609 0.89723 1.02031 1.41140 1.16107 1.12330 1.59133 1.17122 1.04262 0.86028 0.97171 1.20239 1.01454 0.96652 0.96695 1.20525 1.02942 0.93757 1.02165 1.17812 0.90080 0.93140 0.92289 1.19595 1.41782 0.93966 0.98670 0.90489 1.26624 0.94991 0.99111 0.95890 1.69986 1.33476 1.34321 1.05558 0.85525 0.79001 0.78747 0.78382 1.18298 1.19378 1.18416 1.20728 1.02559 0.97405 1.02860 1.20267 1.01771 0.91114 1.00386 1.22653 0.87774 0.98129 0.95946 1.66553 1.37560 0.99524 1.17863 1.19253 0.90159 0.88069 1.01625 0.90972 0.87736 0.89584 0.74014 0.80785 0.74735 0.88971 0.90046 0.90041 0.87914 0.85386 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.24 11.44 127.77 1.46 3.70 16 2 N -0.41 -11.36 4.04 -366.42 -1.48 -12.84 16 3 N -0.26 -6.43 12.40 -53.13 -0.66 -7.09 16 4 C 0.09 1.84 12.29 86.91 1.07 2.91 16 5 C -0.20 -5.32 6.37 -20.23 -0.13 -5.45 16 6 C -0.06 -1.35 10.15 22.80 0.23 -1.12 16 7 C 0.11 3.18 5.89 38.27 0.23 3.41 16 8 N -0.66 -19.99 5.44 -179.83 -0.98 -20.97 16 9 C 0.05 1.94 6.08 38.71 0.24 2.18 16 10 C -0.13 -5.83 7.79 22.15 0.17 -5.66 16 11 C -0.17 -8.98 8.74 22.47 0.20 -8.78 16 12 C 0.07 3.66 5.55 -21.27 -0.12 3.54 16 13 C -0.51 -27.29 8.92 23.36 0.21 -27.08 16 14 H 0.08 3.98 8.02 -2.91 -0.02 3.95 16 15 C 0.05 2.62 4.72 85.22 0.40 3.02 16 16 N -0.81 -42.40 11.98 21.81 0.26 -42.14 16 17 Si 0.96 38.04 29.66 68.60 2.03 40.07 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.22 -9.99 9.74 22.47 0.22 -9.77 16 22 C -0.11 -4.53 9.87 22.15 0.22 -4.31 16 23 C 0.13 4.35 8.88 85.06 0.76 5.10 16 24 N -0.50 -17.38 10.38 -192.35 -2.00 -19.37 16 25 C 0.25 7.78 7.97 134.06 1.07 8.85 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.24 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.41 9.80 8.88 -92.71 -0.82 8.98 16 32 H 0.09 4.05 6.30 -2.91 -0.02 4.04 16 33 H 0.08 4.46 6.69 -2.91 -0.02 4.45 16 34 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 35 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.15 5.66 6.59 -2.91 -0.02 5.64 16 Total: -1.00 -65.23 321.06 3.69 -61.53 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.30 Total: 30.27 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 6.22 Total: -29.46 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -4.85 Total: -102.42 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -65.23 3.69 -61.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249663199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.431 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds