Wall clock time and date at job start Tue Mar 31 2020 07:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39831 * 125.39933 * 2 1 4 4 C 1.30238 * 110.09580 * 179.97438 * 3 2 1 5 5 C 1.45867 * 107.68725 * 359.97438 * 4 3 2 6 6 C 1.40012 * 134.15452 * 180.33317 * 5 4 3 7 7 C 1.38597 * 117.99769 * 180.16625 * 6 5 4 8 8 N 1.40015 * 120.32757 * 179.73983 * 7 6 5 9 9 C 1.39695 * 120.00111 * 149.38533 * 8 7 6 10 10 C 1.39358 * 119.95188 * 327.05391 * 9 8 7 11 11 C 1.38472 * 120.42230 * 180.27369 * 10 9 8 12 12 C 1.37692 * 120.32704 * 0.02562 * 11 10 9 13 13 C 1.40761 * 119.89685 * 359.97438 * 12 11 10 14 14 C 1.41405 * 120.20382 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99512 * 206.99167 * 14 13 12 16 16 C 1.39920 * 120.00537 * 26.99183 * 14 13 12 17 17 N 1.30834 * 120.00154 * 15.48026 * 16 14 13 18 18 Si 1.86801 * 120.00223 * 195.47943 * 16 14 13 19 19 H 1.48498 * 109.46852 * 60.00428 * 18 16 14 20 20 H 1.48502 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47320 * 299.99867 * 18 16 14 22 22 C 1.38299 * 119.95369 * 147.32964 * 9 8 7 23 23 C 1.39454 * 119.34417 * 359.46853 * 7 6 5 24 24 N 1.31439 * 121.47673 * 0.27206 * 23 7 6 25 25 C 1.32732 * 121.73579 * 0.02562 * 24 23 7 26 26 H 1.08996 * 109.46985 * 270.00103 * 1 2 3 27 27 H 1.09000 * 109.46867 * 30.00478 * 1 2 3 28 28 H 1.08999 * 109.46478 * 150.00466 * 1 2 3 29 29 H 1.08004 * 126.15766 * 180.02562 * 4 3 2 30 30 H 1.07996 * 121.00499 * 359.92878 * 6 5 4 31 31 H 0.97004 * 119.99843 * 329.38544 * 8 7 6 32 32 H 1.08006 * 119.78927 * 0.27530 * 10 9 8 33 33 H 1.08001 * 119.83868 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.05103 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00651 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.16478 * 359.70565 * 22 9 8 37 37 H 1.08001 * 119.26009 * 180.29684 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2750 1.1398 0.0000 4 6 3.5312 0.7961 0.0005 5 6 3.5919 -0.6613 0.0016 6 6 4.6361 -1.5940 0.0083 7 6 4.3061 -2.9401 0.0034 8 7 5.3116 -3.9145 0.0042 9 6 5.0865 -5.1500 0.6161 10 6 4.2705 -5.2300 1.7430 11 6 4.0453 -6.4487 2.3605 12 6 4.6261 -7.5957 1.8676 13 6 5.4527 -7.5306 0.7302 14 6 6.0520 -8.7046 0.2182 15 1 6.9794 -8.6417 -0.3319 16 6 5.4438 -9.9477 0.4241 17 7 4.1958 -10.0092 0.8123 18 14 6.4134 -11.5198 0.1450 19 1 7.5908 -11.5423 1.0496 20 1 5.5480 -12.6924 0.4304 21 1 6.8722 -11.5744 -1.2663 22 6 5.6783 -6.2912 0.1060 23 6 2.9628 -3.3145 0.0033 24 7 2.0007 -2.4189 0.0024 25 6 2.2589 -1.1170 0.0012 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3632 -0.8901 -0.5138 29 1 4.3760 1.4690 0.0011 30 1 5.6676 -1.2742 0.0133 31 1 6.1646 -3.7316 -0.4200 32 1 3.8109 -4.3356 2.1372 33 1 3.4109 -6.4999 3.2331 34 1 4.4477 -8.5439 2.3531 35 1 3.7739 -10.8710 0.9547 36 1 6.3106 -6.2306 -0.7674 37 1 2.7072 -4.3639 0.0043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249666513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:23 Heat of formation + Delta-G solvation = 129.342951 kcal Electronic energy + Delta-G solvation = -21756.858140 eV Core-core repulsion = 18500.342098 eV Total energy + Delta-G solvation = -3256.516043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37542 -38.88908 -37.38097 -35.14988 -33.68853 -33.14028 -31.04804 -30.01050 -29.41496 -27.53378 -26.24292 -25.36501 -23.88576 -22.34091 -21.01698 -20.74894 -20.38019 -17.82792 -17.70657 -16.68652 -16.34139 -15.74337 -15.42256 -15.02604 -14.80812 -14.59575 -14.00626 -13.56040 -13.47572 -13.19085 -12.98582 -12.74219 -12.55015 -12.25573 -12.23922 -11.79531 -11.50880 -11.20309 -11.03552 -10.99314 -10.63322 -10.45697 -9.98836 -9.64961 -9.42870 -9.32744 -9.16859 -8.81274 -7.86131 -7.54193 -6.81602 -6.46406 -4.44159 0.86168 1.51154 2.22176 2.49281 2.74946 2.97518 3.04515 3.06639 3.18398 3.77343 3.90970 3.97225 4.30025 4.49642 4.59090 4.70744 5.03849 5.07901 5.18422 5.33540 5.43158 5.54469 5.61171 5.73807 6.10622 6.18417 6.33061 6.36503 6.50243 6.83526 6.85988 6.97319 7.01432 7.16231 7.19127 7.49925 7.59475 7.71461 7.96543 8.03229 8.06443 8.28410 8.30494 8.59505 8.83902 8.90648 10.15468 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.036949 B = 0.003034 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.614498 B = 9227.515638 C = 9582.476210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.401 5.401 3 N -0.244 5.244 4 C 0.072 3.928 5 C -0.192 4.192 6 C -0.080 4.080 7 C 0.124 3.876 8 N -0.683 5.683 9 C 0.180 3.820 10 C -0.270 4.270 11 C -0.083 4.083 12 C -0.176 4.176 13 C 0.132 3.868 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.909 3.091 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.253 4.253 23 C 0.149 3.851 24 N -0.479 5.479 25 C 0.271 3.729 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.197 0.803 30 H 0.137 0.863 31 H 0.402 0.598 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 13.474 -1.490 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.194 5.194 3 N -0.057 5.057 4 C -0.127 4.127 5 C -0.202 4.202 6 C -0.113 4.113 7 C 0.020 3.980 8 N -0.307 5.307 9 C 0.086 3.914 10 C -0.292 4.292 11 C -0.102 4.102 12 C -0.196 4.196 13 C 0.129 3.871 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.276 4.276 23 C -0.024 4.024 24 N -0.193 5.193 25 C 0.033 3.967 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.213 0.787 30 H 0.155 0.845 31 H 0.238 0.762 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.894 13.993 -1.381 14.591 hybrid contribution 1.988 -1.090 -0.273 2.284 sum -1.906 12.903 -1.655 13.148 Atomic orbital electron populations 1.21706 0.73936 1.03994 1.02851 1.47891 1.05749 0.99974 1.65828 1.76572 1.02736 1.08131 1.18267 1.24904 0.94662 0.92811 1.00280 1.20211 0.93705 0.94146 1.12146 1.20524 0.98541 0.89982 1.02264 1.18471 0.90366 0.88786 1.00336 1.41971 1.14729 1.12519 1.61449 1.17409 0.98688 0.83148 0.92110 1.20133 1.11560 0.97077 1.00442 1.20507 0.98744 0.92767 0.98171 1.21298 1.03106 0.97053 0.98104 1.17386 0.89229 0.91237 0.89284 1.19523 1.07869 0.90579 1.31339 0.90469 1.25888 0.94411 1.01109 0.92725 1.69810 1.10534 1.27789 1.33652 0.86359 0.80411 0.80019 0.79885 1.18832 1.20328 1.19031 1.20711 1.11934 0.91843 1.03084 1.22859 0.86655 0.98819 0.94030 1.66680 1.37021 0.98665 1.16894 1.18885 0.88508 0.88045 1.01217 0.91554 0.89900 0.89391 0.78650 0.84519 0.76244 0.89371 0.89133 0.86508 0.90762 0.88678 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.21 11.44 59.85 0.68 1.90 16 2 N -0.40 -5.72 4.05 -67.17 -0.27 -5.99 16 3 N -0.24 -3.30 12.40 31.85 0.39 -2.91 16 4 C 0.07 0.85 12.29 -15.18 -0.19 0.67 16 5 C -0.19 -2.76 6.37 -105.19 -0.67 -3.43 16 6 C -0.08 -1.09 10.15 -38.78 -0.39 -1.49 16 7 C 0.12 1.99 5.90 -83.53 -0.49 1.49 16 8 N -0.68 -11.36 5.46 -8.34 -0.05 -11.41 16 9 C 0.18 3.71 5.82 -83.84 -0.49 3.22 16 10 C -0.27 -5.74 8.04 -39.08 -0.31 -6.06 16 11 C -0.08 -1.86 10.01 -39.69 -0.40 -2.26 16 12 C -0.18 -4.37 8.67 -38.83 -0.34 -4.70 16 13 C 0.13 3.33 5.55 -106.85 -0.59 2.74 16 14 C -0.46 -11.78 9.05 -37.75 -0.34 -12.12 16 15 H 0.08 1.88 7.89 -52.48 -0.41 1.47 16 16 C 0.08 1.86 5.17 -17.35 -0.09 1.77 16 17 N -0.79 -19.88 10.98 55.55 0.61 -19.27 16 18 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.25 -5.77 9.70 -38.67 -0.38 -6.15 16 23 C 0.15 2.57 9.22 -17.27 -0.16 2.41 16 24 N -0.48 -8.23 10.38 -12.16 -0.13 -8.36 16 25 C 0.27 4.36 7.97 -155.96 -1.24 3.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.40 5.70 8.92 -40.82 -0.36 5.34 16 32 H 0.09 1.80 6.83 -52.48 -0.36 1.44 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 3.02 6.26 -52.49 -0.33 2.69 16 35 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 36 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.17 3.16 6.74 -52.49 -0.35 2.81 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -28.77 321.11 -8.94 -37.71 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.91 Total: 11.22 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -5.40 Total: -18.89 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.56 Total: -47.94 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.77 -8.94 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249666513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.048 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds